Gvermi5628.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5628.t1
Unique NameGvermi5628.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length165
Homology
BLAST of Gvermi5628.t1 vs. uniprot
Match: A0A2V3IPR6_9FLOR (Putative ubiquitin-conjugating enzyme E2 18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPR6_9FLOR)

HSP 1 Score: 337 bits (865), Expect = 1.930e-117
Identity = 161/164 (98.17%), Postives = 163/164 (99.39%), Query Frame = 0
Query:    1 MSMGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGRSPKQTRWMFHDDHV 164
            M+MGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQY LRFVFP+DYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGRSPKQTRWMFHDDHV
Sbjct:    1 MNMGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYILRFVFPADYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGRSPKQTRWMFHDDHV 164          
BLAST of Gvermi5628.t1 vs. uniprot
Match: R7QNR9_CHOCR (UBC core domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNR9_CHOCR)

HSP 1 Score: 246 bits (627), Expect = 1.820e-81
Identity = 120/134 (89.55%), Postives = 123/134 (91.79%), Query Frame = 0
Query:    4 GGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVP 137
            G PSS   KELTRVAQRRLTRELAEWSVK PPVPGMSV +TDRVDEW VTVTGAA SVYENE+YTLRFVFPSDYPMEAPEV+FL PTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSA KKG P
Sbjct:    8 GAPSSSLPKELTRVAQRRLTRELAEWSVKNPPVPGMSVEQTDRVDEWRVTVTGAASSVYENERYTLRFVFPSDYPMEAPEVIFLSPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSAAKKGSP 141          
BLAST of Gvermi5628.t1 vs. uniprot
Match: M2VXW6_GALSU (Ubiquitin-conjugating enzyme E2 W n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VXW6_GALSU)

HSP 1 Score: 225 bits (573), Expect = 7.030e-73
Identity = 106/151 (70.20%), Postives = 125/151 (82.78%), Query Frame = 0
Query:   14 LTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGRSPKQTRWMFHDDHV 164
            L+ VA++RL +EL EW V   PVPGMSV + +R+D W V V GA  +++  E+YTLRF FP +YP+EAPEVVFLQPTP H HVY+NGHICLNVLYDGWSPALTVTSVCLSI+SMLSSAT+KG+P DND YIRN +GRSPK TRW+FHDD V
Sbjct:   19 LSAVARKRLLKELREW-VTGDPVPGMSVQQPERLDLWYVKVVGAEDTIFVGEEYTLRFSFPREYPIEAPEVVFLQPTPAHQHVYTNGHICLNVLYDGWSPALTVTSVCLSILSMLSSATEKGIPKDNDAYIRNSRGRSPKLTRWLFHDDSV 168          
BLAST of Gvermi5628.t1 vs. uniprot
Match: A0A0K9RUC4_SPIOL (UBC core domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RUC4_SPIOL)

HSP 1 Score: 204 bits (520), Expect = 6.490e-65
Identity = 92/161 (57.14%), Postives = 121/161 (75.16%), Query Frame = 0
Query:    3 MGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQ-GRSPKQTRWMFHDD 162
            M   S+  RK L+++AQ RL +ELAEW +  PP  G+    TD +  W++ V+GA G++Y NE Y L+  FP  YPMEAP+V+F+ P P HPH+YSNGHICL++LYD WSPA+TV S+C+SI+SMLSS+T K  PPDND Y++NC+ GRSPK+TRW FHDD
Sbjct:    1 MTSSSTQSRKVLSKIAQNRLQKELAEWQLNPPP--GLKHKITDNLQRWVIDVSGAPGTLYANETYQLQVDFPEHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVNSICISILSMLSSSTSKQRPPDNDRYVKNCRNGRSPKETRWWFHDD 159          
BLAST of Gvermi5628.t1 vs. uniprot
Match: A0A2J6LBG5_LACSA (UBC core domain-containing protein n=2 Tax=Asteraceae TaxID=4210 RepID=A0A2J6LBG5_LACSA)

HSP 1 Score: 202 bits (513), Expect = 7.540e-64
Identity = 94/163 (57.67%), Postives = 120/163 (73.62%), Query Frame = 0
Query:    3 MGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQ-GRSPKQTRWMFHDDHV 164
            M G S+  RK L+++A  RL +EL EW V  P   G     TD +  W++ V GA G++Y NE+Y L+  FP +YPMEAP+V+FL P P HPH+YSNGHICL++LYD WSPA+TV+SVC+SI+SMLSS+T K  P DND Y+RNC+ GRSPK+TRW FHDD V
Sbjct:    1 MTGSSTSSRKVLSKIASNRLQKELVEWQVNPPS--GFVHKVTDNLQRWVIEVYGAQGTIYANEKYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKERPEDNDRYVRNCRNGRSPKETRWWFHDDKV 161          
BLAST of Gvermi5628.t1 vs. uniprot
Match: A0A7C9DCT4_OPUST (E2 ubiquitin-conjugating enzyme n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DCT4_OPUST)

HSP 1 Score: 201 bits (512), Expect = 1.070e-63
Identity = 94/163 (57.67%), Postives = 119/163 (73.01%), Query Frame = 0
Query:    3 MGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNC-QGRSPKQTRWMFHDDHV 164
            M G S+  RK L+++A  RL +EL EW    PP  G     TD +  W++ VTGA G++Y NE+Y L+  FP  YPMEAP+V+F+ P P HPH+YSNGHICL++LYD WSPA+TV+S+C+SI+SMLSSAT K  P DND Y+RNC  GRSPK+TRW FHDD V
Sbjct:    1 MTGSSASSRKALSKIASNRLQKELTEWH-HNPPA-GFKHKVTDNLQRWIIEVTGAPGTIYANEKYQLQVDFPEHYPMEAPQVIFVPPAPMHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSATVKERPEDNDRYVRNCGNGRSPKETRWWFHDDKV 161          
BLAST of Gvermi5628.t1 vs. uniprot
Match: A0A218X7U8_PUNGR (probable ubiquitin-conjugating enzyme E2 18 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218X7U8_PUNGR)

HSP 1 Score: 201 bits (510), Expect = 2.090e-63
Identity = 90/164 (54.88%), Postives = 121/164 (73.78%), Query Frame = 0
Query:    1 MSMGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGRSPKQTRWMFHDDHV 164
            M+   P+S  RK L+++A  RL +EL EW V  P   G  +  TD +  W++ V GA G++Y +E Y L+  FP  YPMEAP+V+F+ P P HPH+YSNGHICL++LYD WSPA+TV+S+C+SI+SMLSS+T K +P DND Y++NC+GRSPK+TRW FHDD V
Sbjct:    1 MTSSSPAS--RKALSKIACNRLQKELVEWQVNPPS--GFKLKLTDNLQRWVIEVNGAPGTLYADESYQLQVDFPEHYPMEAPQVIFIPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQLPADNDRYVKNCRGRSPKETRWWFHDDTV 160          
BLAST of Gvermi5628.t1 vs. uniprot
Match: UPI001CB8BE2A (probable ubiquitin-conjugating enzyme E2 16 isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8BE2A)

HSP 1 Score: 201 bits (510), Expect = 2.160e-63
Identity = 93/161 (57.76%), Postives = 118/161 (73.29%), Query Frame = 0
Query:    3 MGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQ-GRSPKQTRWMFHDD 162
            M G S+   K L+++A  RL +EL EW V  PP  G +   TD +  W++ V GA G++Y NE+Y L+  FP  YPMEAP+V+FL P P HPH+YSNGHICL++LYD WSPA+TV SVC+SI+SMLSS+T K  P DND YI+NC+ GRSPK+TRW FHDD
Sbjct:    1 MTGSSASSHKALSKIASNRLQKELMEWQVNPPP--GFTHQVTDNLQRWVIEVHGAQGTIYANEKYQLQIDFPEHYPMEAPQVIFLHPVPLHPHIYSNGHICLDILYDSWSPAMTVGSVCISILSMLSSSTVKEQPGDNDRYIKNCRNGRSPKETRWWFHDD 159          
BLAST of Gvermi5628.t1 vs. uniprot
Match: C6SVP6_SOYBN (UBC core domain-containing protein n=12 Tax=fabids TaxID=91835 RepID=C6SVP6_SOYBN)

HSP 1 Score: 200 bits (508), Expect = 4.340e-63
Identity = 93/163 (57.06%), Postives = 119/163 (73.01%), Query Frame = 0
Query:    3 MGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQ-GRSPKQTRWMFHDDHV 164
            M   S+  RK L+++A  RL +EL EW V  P   G     TD +  W+V VTGA G++Y NE Y L+  FP +YPMEAP+V+FL P P HPH+YSNGHICL++LYD WSPA+TV+S+C+SI+SMLSS+T K  P DND Y++NC+ GRSPK+TRW FHDD V
Sbjct:    1 MTSSSAAARKNLSKIACNRLQKELVEWQVNPPT--GFKHKVTDNLQRWVVEVTGAPGTLYANETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTTKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161          
BLAST of Gvermi5628.t1 vs. uniprot
Match: A0A7I8JAN7_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JAN7_SPIIN)

HSP 1 Score: 199 bits (507), Expect = 6.170e-63
Identity = 96/163 (58.90%), Postives = 120/163 (73.62%), Query Frame = 0
Query:    3 MGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEWLVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNGHICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQ-GRSPKQTRWMFHDDHV 164
            M   SS   K L+++A  RL +ELAEW V  PP  G     +D +  W++ V GA G++Y +E Y L+  FP  YPMEAP+V+FLQP P HPH+YSNGHICL++LYD WSPA+TV+SVC+SI+SMLSS+T K  PPDND Y+RNCQ GRSPK+TRW FHDD V
Sbjct:    1 MTSTSSPSTKALSKIACNRLQKELAEWQVN-PPF-GFKHKISDNLQRWIIEVAGAPGTLYVSETYQLQVDFPEHYPMEAPQVIFLQPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPPDNDRYVRNCQNGRSPKETRWWFHDDKV 161          
The following BLAST results are available for this feature:
BLAST of Gvermi5628.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPR6_9FLOR1.930e-11798.17Putative ubiquitin-conjugating enzyme E2 18 n=1 Ta... [more]
R7QNR9_CHOCR1.820e-8189.55UBC core domain-containing protein n=1 Tax=Chondru... [more]
M2VXW6_GALSU7.030e-7370.20Ubiquitin-conjugating enzyme E2 W n=1 Tax=Galdieri... [more]
A0A0K9RUC4_SPIOL6.490e-6557.14UBC core domain-containing protein n=1 Tax=Spinaci... [more]
A0A2J6LBG5_LACSA7.540e-6457.67UBC core domain-containing protein n=2 Tax=Asterac... [more]
A0A7C9DCT4_OPUST1.070e-6357.67E2 ubiquitin-conjugating enzyme n=2 Tax=Opuntia st... [more]
A0A218X7U8_PUNGR2.090e-6354.88probable ubiquitin-conjugating enzyme E2 18 n=1 Ta... [more]
UPI001CB8BE2A2.160e-6357.76probable ubiquitin-conjugating enzyme E2 16 isofor... [more]
C6SVP6_SOYBN4.340e-6357.06UBC core domain-containing protein n=12 Tax=fabids... [more]
A0A7I8JAN7_SPIIN6.170e-6358.90Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 20..164
e-value: 5.7E-30
score: 115.6
NoneNo IPR availablePANTHERPTHR24068UBIQUITIN-CONJUGATING ENZYME E2coord: 14..163
NoneNo IPR availablePANTHERPTHR24068:SF300UBIQUITIN-CONJUGATING ENZYME 15, E2coord: 14..163
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 15..164
e-value: 3.8E-43
score: 148.6
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 12..130
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 21..152
e-value: 9.9E-32
score: 109.5
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 17..164
score: 37.120323
IPR000608Ubiquitin-conjugating enzyme E2CDDcd00195UBCccoord: 20..130
e-value: 6.41197E-37
score: 122.311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:784719..785213 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5628.t1Gvermi5628.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 784719..785213 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5628.t1 ID=Gvermi5628.t1|Name=Gvermi5628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=165bp
MSMGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEW
LVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNG
HICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGR
SPKQTRWMFHDDHV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2