Gvermi5628.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5628.t1
Unique NameGvermi5628.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:784719..785213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704661.1
Preferred nameUBC17
PFAMsUQ_con
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Evalue3.02e-74
EggNOG OGsCOG5078@1|root,KOG0427@2759|Eukaryota
EC2.1.1.297,2.3.2.25
Descriptionprotein polyubiquitination
COG categoryO
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5628Gvermi5628Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 784719..785213 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5628.t1.start1Gvermi5628.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 784719..784721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5628.t1.CDS1Gvermi5628.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 784719..785213 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5628.t1.exon1Gvermi5628.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 784719..785213 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5628.t1.stop1Gvermi5628.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 785211..785213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5628.t1Gvermi5628.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 784719..785213 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5628.t1 ID=Gvermi5628.t1|Name=Gvermi5628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=165bp
MSMGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEW
LVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNG
HICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGR
SPKQTRWMFHDDHV*
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spliced messenger RNA

>Gvermi5628.t1 ID=Gvermi5628.t1|Name=Gvermi5628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=495bp|location=Sequence derived from alignment at ScGOVlb_776:784719..785213+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTATGGGCGGCCCCTCGTCACATCGCCGGAAAGAACTTACGCGCGT
CGCACAACGCCGTCTTACGCGTGAGTTGGCTGAGTGGTCGGTAAAGACAC
CGCCTGTTCCCGGCATGTCCGTTTCGGAGACTGATCGAGTGGACGAGTGG
CTCGTCACCGTCACCGGCGCCGCCGGCAGCGTGTACGAAAACGAACAGTA
CACATTGCGCTTTGTTTTCCCTTCTGATTACCCTATGGAAGCTCCGGAAG
TCGTATTTTTGCAACCCACGCCTCGCCATCCTCATGTCTATTCCAATGGG
CACATCTGTCTCAACGTGCTATACGACGGATGGAGTCCTGCGCTCACTGT
CACCTCTGTCTGTCTCAGCATCGTTAGCATGCTGAGCAGTGCCACAAAGA
AAGGCGTTCCCCCCGACAACGATACCTACATTCGCAACTGTCAAGGAAGG
TCACCCAAGCAAACACGGTGGATGTTCCACGATGACCATGTTTGA
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protein sequence of Gvermi5628.t1

>Gvermi5628.t1 ID=Gvermi5628.t1|Name=Gvermi5628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=165bp
MSMGGPSSHRRKELTRVAQRRLTRELAEWSVKTPPVPGMSVSETDRVDEW
LVTVTGAAGSVYENEQYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNG
HICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGR
SPKQTRWMFHDDHV*
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mRNA from alignment at ScGOVlb_776:784719..785213+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5628.t1 ID=Gvermi5628.t1|Name=Gvermi5628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=495bp|location=Sequence derived from alignment at ScGOVlb_776:784719..785213+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTATGGGCGGCCCCTCGTCACATCGCCGGAAAGAACTTACGCGCGT
CGCACAACGCCGTCTTACGCGTGAGTTGGCTGAGTGGTCGGTAAAGACAC
CGCCTGTTCCCGGCATGTCCGTTTCGGAGACTGATCGAGTGGACGAGTGG
CTCGTCACCGTCACCGGCGCCGCCGGCAGCGTGTACGAAAACGAACAGTA
CACATTGCGCTTTGTTTTCCCTTCTGATTACCCTATGGAAGCTCCGGAAG
TCGTATTTTTGCAACCCACGCCTCGCCATCCTCATGTCTATTCCAATGGG
CACATCTGTCTCAACGTGCTATACGACGGATGGAGTCCTGCGCTCACTGT
CACCTCTGTCTGTCTCAGCATCGTTAGCATGCTGAGCAGTGCCACAAAGA
AAGGCGTTCCCCCCGACAACGATACCTACATTCGCAACTGTCAAGGAAGG
TCACCCAAGCAAACACGGTGGATGTTCCACGATGACCATGTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_776:784719..785213+

>Gvermi5628.t1 ID=Gvermi5628.t1|Name=Gvermi5628.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=495bp|location=Sequence derived from alignment at ScGOVlb_776:784719..785213+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTATGGGCGGCCCCTCGTCACATCGCCGGAAAGAACTTACGCGCGT
CGCACAACGCCGTCTTACGCGTGAGTTGGCTGAGTGGTCGGTAAAGACAC
CGCCTGTTCCCGGCATGTCCGTTTCGGAGACTGATCGAGTGGACGAGTGG
CTCGTCACCGTCACCGGCGCCGCCGGCAGCGTGTACGAAAACGAACAGTA
CACATTGCGCTTTGTTTTCCCTTCTGATTACCCTATGGAAGCTCCGGAAG
TCGTATTTTTGCAACCCACGCCTCGCCATCCTCATGTCTATTCCAATGGG
CACATCTGTCTCAACGTGCTATACGACGGATGGAGTCCTGCGCTCACTGT
CACCTCTGTCTGTCTCAGCATCGTTAGCATGCTGAGCAGTGCCACAAAGA
AAGGCGTTCCCCCCGACAACGATACCTACATTCGCAACTGTCAAGGAAGG
TCACCCAAGCAAACACGGTGGATGTTCCACGATGACCATGTTTGA
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