Gvermi5635.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5635.t1
Unique NameGvermi5635.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:824648..825619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1335760.ASTG01000017_gene3499
Preferred nameglnD
PFAMsDUF294,GlnD_UR_UTase,HD
Max annot lvl204457|Sphingomonadales
KEGG koko:K00990
KEGG Pathwayko02020,map02020
Evalue6.01e-07
EggNOG OGsCOG2844@1|root,COG2844@2|Bacteria,1MV54@1224|Proteobacteria,2TSV0@28211|Alphaproteobacteria,2K0BN@204457|Sphingomonadales
EC2.7.7.59
DescriptionModifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5635Gvermi5635Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 824648..825619 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5635.t1.start1Gvermi5635.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 824648..824650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5635.t1.CDS1Gvermi5635.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 824648..825619 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5635.t1.exon1Gvermi5635.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 824648..825619 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5635.t1.stop1Gvermi5635.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 825617..825619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5635.t1Gvermi5635.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 824648..825619 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5635.t1 ID=Gvermi5635.t1|Name=Gvermi5635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=324bp
LRTQVYAPDDDDVCTFGEECCIPEDVVRASPALDHLLHKYVLPVREHNTQ
VFFDNALSPAHTLMLVFARDRHGLVLDVVSVLKALGVRVHRTASGESDAL
QLVLHRIEGELRSVRALGLSLSNCVAFWLSDERGADKIDDGARLDQLTTC
VKLELNTPHPRPRPASERDWHRISVQKNRADRFSVFSVQTADRPRLLAEL
TNAFAAAHIDVASATINTFSDRVENTFFVTKHGFKQPLCEHDIKLALRNV
ARALLKVGRREPHETLWYQVRDGTAVVIAEAIFIDEVNNRELEMLRFSHF
ETPNFRGRLPDVPYCPIHLHDEQ*
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spliced messenger RNA

>Gvermi5635.t1 ID=Gvermi5635.t1|Name=Gvermi5635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=972bp|location=Sequence derived from alignment at ScGOVlb_776:824648..825619+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCACGCAGGTGTACGCGCCCGACGACGACGACGTGTGCACCTTTGG
CGAAGAGTGCTGCATCCCCGAGGACGTCGTGCGCGCCTCGCCGGCGCTGG
ACCACCTGCTGCACAAGTACGTGCTGCCCGTGCGCGAGCACAACACGCAG
GTGTTCTTCGACAACGCGCTGTCGCCGGCGCACACGCTCATGCTCGTGTT
CGCGCGCGACCGCCACGGGCTCGTGCTGGACGTGGTGTCCGTGCTCAAGG
CGCTGGGCGTGCGCGTGCACCGCACGGCCAGCGGCGAGAGCGACGCGCTG
CAGCTCGTGCTGCACCGCATCGAGGGCGAGCTGCGCTCCGTGCGCGCCCT
GGGGCTGTCGCTCAGCAACTGCGTCGCCTTCTGGCTCAGCGACGAGCGCG
GCGCCGACAAGATCGACGACGGCGCGCGCCTGGACCAGCTCACCACGTGC
GTCAAGCTGGAGCTCAACACGCCGCACCCGCGCCCGCGCCCGGCCTCTGA
GCGCGACTGGCACCGCATCTCGGTGCAAAAGAACCGCGCCGACCGCTTCT
CCGTGTTCTCGGTGCAGACCGCCGACCGCCCGCGCCTGCTGGCCGAGCTC
ACCAACGCCTTTGCCGCCGCGCACATCGACGTGGCCAGCGCCACCATCAA
CACCTTCTCCGACCGCGTCGAGAACACCTTCTTCGTCACCAAGCACGGCT
TCAAGCAGCCGCTGTGCGAGCACGACATCAAGCTCGCCCTGCGCAACGTC
GCGCGCGCCCTGCTCAAAGTGGGACGCAGGGAGCCGCACGAGACGCTGTG
GTACCAGGTGCGCGACGGCACCGCCGTCGTCATCGCCGAGGCCATCTTCA
TCGACGAGGTCAACAACCGCGAGCTGGAAATGCTCCGCTTTTCGCACTTT
GAGACGCCCAACTTCCGCGGCCGCCTCCCCGATGTACCATACTGCCCCAT
CCACCTGCACGACGAGCAGTGA
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protein sequence of Gvermi5635.t1

>Gvermi5635.t1 ID=Gvermi5635.t1|Name=Gvermi5635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=324bp
LRTQVYAPDDDDVCTFGEECCIPEDVVRASPALDHLLHKYVLPVREHNTQ
VFFDNALSPAHTLMLVFARDRHGLVLDVVSVLKALGVRVHRTASGESDAL
QLVLHRIEGELRSVRALGLSLSNCVAFWLSDERGADKIDDGARLDQLTTC
VKLELNTPHPRPRPASERDWHRISVQKNRADRFSVFSVQTADRPRLLAEL
TNAFAAAHIDVASATINTFSDRVENTFFVTKHGFKQPLCEHDIKLALRNV
ARALLKVGRREPHETLWYQVRDGTAVVIAEAIFIDEVNNRELEMLRFSHF
ETPNFRGRLPDVPYCPIHLHDEQ*
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mRNA from alignment at ScGOVlb_776:824648..825619+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5635.t1 ID=Gvermi5635.t1|Name=Gvermi5635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=972bp|location=Sequence derived from alignment at ScGOVlb_776:824648..825619+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCACGCAGGTGTACGCGCCCGACGACGACGACGTGTGCACCTTTGG
CGAAGAGTGCTGCATCCCCGAGGACGTCGTGCGCGCCTCGCCGGCGCTGG
ACCACCTGCTGCACAAGTACGTGCTGCCCGTGCGCGAGCACAACACGCAG
GTGTTCTTCGACAACGCGCTGTCGCCGGCGCACACGCTCATGCTCGTGTT
CGCGCGCGACCGCCACGGGCTCGTGCTGGACGTGGTGTCCGTGCTCAAGG
CGCTGGGCGTGCGCGTGCACCGCACGGCCAGCGGCGAGAGCGACGCGCTG
CAGCTCGTGCTGCACCGCATCGAGGGCGAGCTGCGCTCCGTGCGCGCCCT
GGGGCTGTCGCTCAGCAACTGCGTCGCCTTCTGGCTCAGCGACGAGCGCG
GCGCCGACAAGATCGACGACGGCGCGCGCCTGGACCAGCTCACCACGTGC
GTCAAGCTGGAGCTCAACACGCCGCACCCGCGCCCGCGCCCGGCCTCTGA
GCGCGACTGGCACCGCATCTCGGTGCAAAAGAACCGCGCCGACCGCTTCT
CCGTGTTCTCGGTGCAGACCGCCGACCGCCCGCGCCTGCTGGCCGAGCTC
ACCAACGCCTTTGCCGCCGCGCACATCGACGTGGCCAGCGCCACCATCAA
CACCTTCTCCGACCGCGTCGAGAACACCTTCTTCGTCACCAAGCACGGCT
TCAAGCAGCCGCTGTGCGAGCACGACATCAAGCTCGCCCTGCGCAACGTC
GCGCGCGCCCTGCTCAAAGTGGGACGCAGGGAGCCGCACGAGACGCTGTG
GTACCAGGTGCGCGACGGCACCGCCGTCGTCATCGCCGAGGCCATCTTCA
TCGACGAGGTCAACAACCGCGAGCTGGAAATGCTCCGCTTTTCGCACTTT
GAGACGCCCAACTTCCGCGGCCGCCTCCCCGATGTACCATACTGCCCCAT
CCACCTGCACGACGAGCAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_776:824648..825619+

>Gvermi5635.t1 ID=Gvermi5635.t1|Name=Gvermi5635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=972bp|location=Sequence derived from alignment at ScGOVlb_776:824648..825619+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCACGCAGGTGTACGCGCCCGACGACGACGACGTGTGCACCTTTGG
CGAAGAGTGCTGCATCCCCGAGGACGTCGTGCGCGCCTCGCCGGCGCTGG
ACCACCTGCTGCACAAGTACGTGCTGCCCGTGCGCGAGCACAACACGCAG
GTGTTCTTCGACAACGCGCTGTCGCCGGCGCACACGCTCATGCTCGTGTT
CGCGCGCGACCGCCACGGGCTCGTGCTGGACGTGGTGTCCGTGCTCAAGG
CGCTGGGCGTGCGCGTGCACCGCACGGCCAGCGGCGAGAGCGACGCGCTG
CAGCTCGTGCTGCACCGCATCGAGGGCGAGCTGCGCTCCGTGCGCGCCCT
GGGGCTGTCGCTCAGCAACTGCGTCGCCTTCTGGCTCAGCGACGAGCGCG
GCGCCGACAAGATCGACGACGGCGCGCGCCTGGACCAGCTCACCACGTGC
GTCAAGCTGGAGCTCAACACGCCGCACCCGCGCCCGCGCCCGGCCTCTGA
GCGCGACTGGCACCGCATCTCGGTGCAAAAGAACCGCGCCGACCGCTTCT
CCGTGTTCTCGGTGCAGACCGCCGACCGCCCGCGCCTGCTGGCCGAGCTC
ACCAACGCCTTTGCCGCCGCGCACATCGACGTGGCCAGCGCCACCATCAA
CACCTTCTCCGACCGCGTCGAGAACACCTTCTTCGTCACCAAGCACGGCT
TCAAGCAGCCGCTGTGCGAGCACGACATCAAGCTCGCCCTGCGCAACGTC
GCGCGCGCCCTGCTCAAAGTGGGACGCAGGGAGCCGCACGAGACGCTGTG
GTACCAGGTGCGCGACGGCACCGCCGTCGTCATCGCCGAGGCCATCTTCA
TCGACGAGGTCAACAACCGCGAGCTGGAAATGCTCCGCTTTTCGCACTTT
GAGACGCCCAACTTCCGCGGCCGCCTCCCCGATGTACCATACTGCCCCAT
CCACCTGCACGACGAGCAGTGA
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