Gvermi5655.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5655.t1
Unique NameGvermi5655.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:912999..913664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LC91
PFAMsGTP_EFTU,GTP_EFTU_D2,RF3_C
Max annot lvl2759|Eukaryota
Evalue1.29e-62
EggNOG OGsCOG0480@1|root,KOG0465@2759|Eukaryota
Descriptiontranslation elongation factor activity
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5655Gvermi5655Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 912999..913664 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5655.t1.start1Gvermi5655.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 912999..913001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5655.t1.CDS1Gvermi5655.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 912999..913664 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5655.t1.exon1Gvermi5655.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 912999..913664 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5655.t1.stop1Gvermi5655.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 913662..913664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5655.t1Gvermi5655.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 912999..913664 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5655.t1 ID=Gvermi5655.t1|Name=Gvermi5655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=222bp
MLNDELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTGLFAPDTQH
FTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNARHCKTMALTTR
QGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGNLSFQSIPSFSP
ELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVE
LLQFEVVHRRHKDEYNISSGS*
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spliced messenger RNA

>Gvermi5655.t1 ID=Gvermi5655.t1|Name=Gvermi5655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_776:912999..913664+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAACGATGAGCTTATGCCTATGTTCTTCGGTTCTGCCATGTCCAA
TTTTGGTGTGGAGCTGTTTCTGCGTTTGTTCTTGGAGCTGGGACGCTGTC
CACCTTCTAAGCAAAACTCTACAGGGCTGTTTGCGCCGGACACGCAGCAT
TTCACCTGGCAGTTGTTCAAACTGCAGCCCAGTAAGGATATCAGACATCG
TGATCGACTTGCGTTCATCCGCATTTTTAGCGGCGAGTTTGAGAAAAAAA
TGAAGGTGAACAACGCGCGGCATTGCAAAACGATGGCTCTCACCACACGG
CAAGGGTTTTTTGCGGCAGAGCGATACAAAGTTCAGGCGGCATTTTCTGG
CGATATGAATGGGCTTTACAAACCGGGCATCTTTGCAATACGGGATGCGG
TCTATACGGGTGGAAACTTAAGCTTTCAGAGCATTCCAAGCTTTAGCCCT
GAGTTATTTGCATATATACAAAACCCGAATCCATTGGCGTACAAGAACTT
TTGCAAAGAACCAAATCAGCTGTTGGAAAAGGGGGCCGTGCAACTGCTGC
GGGCTAGGGAGGACAAAGGAAATGAAGATCCCATATTGGGGTCTGTGGAG
CTGTTGCAGTTTGAGGTAGTGCATCGACGACATAAAGATGAATACAACAT
TTCGAGTGGTTCATAA
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protein sequence of Gvermi5655.t1

>Gvermi5655.t1 ID=Gvermi5655.t1|Name=Gvermi5655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=222bp
MLNDELMPMFFGSAMSNFGVELFLRLFLELGRCPPSKQNSTGLFAPDTQH
FTWQLFKLQPSKDIRHRDRLAFIRIFSGEFEKKMKVNNARHCKTMALTTR
QGFFAAERYKVQAAFSGDMNGLYKPGIFAIRDAVYTGGNLSFQSIPSFSP
ELFAYIQNPNPLAYKNFCKEPNQLLEKGAVQLLRAREDKGNEDPILGSVE
LLQFEVVHRRHKDEYNISSGS*
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mRNA from alignment at ScGOVlb_776:912999..913664+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5655.t1 ID=Gvermi5655.t1|Name=Gvermi5655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_776:912999..913664+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTAACGATGAGCTTATGCCTATGTTCTTCGGTTCTGCCATGTCCAA
TTTTGGTGTGGAGCTGTTTCTGCGTTTGTTCTTGGAGCTGGGACGCTGTC
CACCTTCTAAGCAAAACTCTACAGGGCTGTTTGCGCCGGACACGCAGCAT
TTCACCTGGCAGTTGTTCAAACTGCAGCCCAGTAAGGATATCAGACATCG
TGATCGACTTGCGTTCATCCGCATTTTTAGCGGCGAGTTTGAGAAAAAAA
TGAAGGTGAACAACGCGCGGCATTGCAAAACGATGGCTCTCACCACACGG
CAAGGGTTTTTTGCGGCAGAGCGATACAAAGTTCAGGCGGCATTTTCTGG
CGATATGAATGGGCTTTACAAACCGGGCATCTTTGCAATACGGGATGCGG
TCTATACGGGTGGAAACTTAAGCTTTCAGAGCATTCCAAGCTTTAGCCCT
GAGTTATTTGCATATATACAAAACCCGAATCCATTGGCGTACAAGAACTT
TTGCAAAGAACCAAATCAGCTGTTGGAAAAGGGGGCCGTGCAACTGCTGC
GGGCTAGGGAGGACAAAGGAAATGAAGATCCCATATTGGGGTCTGTGGAG
CTGTTGCAGTTTGAGGTAGTGCATCGACGACATAAAGATGAATACAACAT
TTCGAGTGGTTCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:912999..913664+

>Gvermi5655.t1 ID=Gvermi5655.t1|Name=Gvermi5655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=666bp|location=Sequence derived from alignment at ScGOVlb_776:912999..913664+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTAACGATGAGCTTATGCCTATGTTCTTCGGTTCTGCCATGTCCAA
TTTTGGTGTGGAGCTGTTTCTGCGTTTGTTCTTGGAGCTGGGACGCTGTC
CACCTTCTAAGCAAAACTCTACAGGGCTGTTTGCGCCGGACACGCAGCAT
TTCACCTGGCAGTTGTTCAAACTGCAGCCCAGTAAGGATATCAGACATCG
TGATCGACTTGCGTTCATCCGCATTTTTAGCGGCGAGTTTGAGAAAAAAA
TGAAGGTGAACAACGCGCGGCATTGCAAAACGATGGCTCTCACCACACGG
CAAGGGTTTTTTGCGGCAGAGCGATACAAAGTTCAGGCGGCATTTTCTGG
CGATATGAATGGGCTTTACAAACCGGGCATCTTTGCAATACGGGATGCGG
TCTATACGGGTGGAAACTTAAGCTTTCAGAGCATTCCAAGCTTTAGCCCT
GAGTTATTTGCATATATACAAAACCCGAATCCATTGGCGTACAAGAACTT
TTGCAAAGAACCAAATCAGCTGTTGGAAAAGGGGGCCGTGCAACTGCTGC
GGGCTAGGGAGGACAAAGGAAATGAAGATCCCATATTGGGGTCTGTGGAG
CTGTTGCAGTTTGAGGTAGTGCATCGACGACATAAAGATGAATACAACAT
TTCGAGTGGTTCATAA
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