Gvermi5582.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5582.t1
Unique NameGvermi5582.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length438
Homology
BLAST of Gvermi5582.t1 vs. uniprot
Match: A0A2V3IYE9_9FLOR (Regulator of nonsense transcripts UPF3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYE9_9FLOR)

HSP 1 Score: 380 bits (976), Expect = 6.270e-126
Identity = 242/442 (54.75%), Postives = 294/442 (66.52%), Query Frame = 0
Query:    1 MDRAAARRGRAAGDRPGAARPXXXXXXXXXXXXXXXXXXXXAAARLRPRXXXXXXXXXKPPAPSIAVKLIVRRLPPTLTAEEFSSHAAPNGADKAIWTAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLEGTIENDPDYIKFLAELKGDAEREQSELAATLTSASTIVGRPTAIEKDNSPPRGQVVTPLMEDVRARRRERXXXXXXXXXXRGXXXXXXXXXPPPPLTPLS-NKANDSAEAIKLGARRKKRRGADNASASKRDQPAQDRKSPKFPSNDRRNGQLRP----ADSSVSASAPPNPTSSSPYANSTASVSNASNGKGNSSRXXXXXXXXXXXXXXXXXXXXXXXXXTVGVAARTENQNSDPLHGPVRVLRKEASVTNKT 437
            MDRA+ARRGRA G RP    P                    A+ R  PR   XXXXXX    PS+A+K++VRRLPPTLTAE+F +HA P GADKA+W AYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDA+HFF +FD FKFV+  KT+DSSLQSGTDY+ARVERAM+Q TP +T RR P  +EGTIE+DPDY+ FLAE+KGDAEREQSELAA  T+ S++V R T  EK++   +G V+TPL+EDVRARR+ER          RG          PPP    +  K  +S E +KLGA+RKKRR  DN +ASKRD   Q+RK  K  +N+RRNGQ+R     A +S SA+A   P SS P+AN+ A+++  S  KG S+RXXXX                     T+G   + E  +SD +HGPVRVL+KEASVT+KT
Sbjct:    1 MDRASARRGRAPGGRPRRRPPRPSHPQQ-------------ASPRSHPRSKNXXXXXXX--XPSVAIKIVVRRLPPTLTAEQFRTHANPKGADKALWNAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDATHFFNEFDGFKFVDPGKTIDSSLQSGTDYFARVERAMFQTTPLLTRRRAPPAIEGTIESDPDYLNFLAEMKGDAEREQSELAANQTAGSSVVSRHTTTEKEDRASKGLVLTPLIEDVRARRKERDERKKAKSTVRGSRGKGRGSTAPPPAAISAVPKVVESVENVKLGAKRKKRRAGDNKNASKRDDAVQERKGSKSGANERRNGQIRQTGPNAGNSTSANANKAPPSS-PFANNNAAMNGGSGSKGGSTRXXXXGRSRYSRGQKGRGRYAQNGNGTIG--GKHEAGSSDSVHGPVRVLKKEASVTHKT 424          
BLAST of Gvermi5582.t1 vs. uniprot
Match: R7QSJ8_CHOCR (Smg4_UPF3 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSJ8_CHOCR)

HSP 1 Score: 148 bits (374), Expect = 3.540e-36
Identity = 94/223 (42.15%), Postives = 125/223 (56.05%), Query Frame = 0
Query:   62 APSIAVKLIVRRLPPTLTAEEFSSHAAPNGADKAIWTAYYPGKVEAV-GAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLEGTIENDPDYIKFLAELKGDAEREQSELAA--------------------------TLTSASTIVGRPTAIEKDNSPPRGQVVTPLMEDVRARRRER 257
            AP++AVKL+VRRLPPTLTA++F+  A P GA +A+W ++ PG   A  G VKR   V RH+ AYLAF  ++DA  F Q F+  KF +      S      D+ ARVERA +Q  PP+T   +P PL GTIE DPDY+ F+A L+ + ++E S   A                          T  S ST  G+  A+  + S    ++ TPLMEDVRARR+ER
Sbjct:   93 APTVAVKLVVRRLPPTLTADKFAEIADPAGASRAVWRSFAPGSASAASGPVKRLRLVTRHATAYLAFVNMDDAVAFTQTFNGIKFQDPNAPPSSQ---NHDFIARVERAPWQPVPPLTKITKPLPLHGTIERDPDYMAFVARLEDETKKELSGANALTVAQTSAIFSRGPGSNPSDTQKRDNTSASVSTSTGKAGALAVNGS----ELSTPLMEDVRARRKER 308          
BLAST of Gvermi5582.t1 vs. uniprot
Match: A0A7S1XA88_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XA88_9RHOD)

HSP 1 Score: 87.4 bits (215), Expect = 6.050e-15
Identity = 69/199 (34.67%), Postives = 104/199 (52.26%), Query Frame = 0
Query:   67 VKLIVRRLPPTLTAEEFSSHAAPNGADKA------IWTAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLEGTIENDPDYIKFLAELKGDAEREQSELAATLTSASTIVGRPTAIEKDNSPPRGQ--VVTPLMEDVRARRRER 257
            VKLIVR+LPP LT EE  +       D        IWT +  GK+       + ++ +RHSV Y+AF+  ++AS F   F++  F++         ++G  Y A VERA  Q  P   +++   PL+GTIE+D DY +FL +    AE E   +     +   +V     +    S  RG+  +VTPL+E++RA+RRER
Sbjct:  131 VKLIVRKLPPCLTVEEIQASMDRVAIDAGEPHFLPIWTRFRSGKLA------KPSRAMRHSVLYVAFKDHKEASRFANLFNSHCFLDG--------KNGMCYNAVVERAPNQQIP--RAQKSKDPLQGTIESDTDYKRFLTKY---AEAESRPIGPLQGTGGLLVTT-EMVASTTSATRGRDIIVTPLVEELRAKRRER 309          
BLAST of Gvermi5582.t1 vs. uniprot
Match: UPI000D1C37A9 (regulator of nonsense transcripts UPF3 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C37A9)

HSP 1 Score: 76.6 bits (187), Expect = 1.940e-11
Identity = 64/192 (33.33%), Postives = 86/192 (44.79%), Query Frame = 0
Query:   63 PSIAVKLIVRRLPPTLTAEEFSSHAAPNGADKAIWTAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLEGTIENDPDYIKFLAELKGDAEREQSELAATLTSASTIVGRPTAIEKDNSPPRGQVVTPLMEDVRARR 254
            P    K++VRRLPPTL+ +   S      A   +W  + PGK      +        HS AY+ FE+ ED   F + F    FV          + G+ Y A VE A YQ  P +  ++     EG+I  DPDY++F+  L   AE         L SA   + RP       S   G +VTPLME VR +R
Sbjct:   43 PLSRTKVVVRRLPPTLSEDALVSRIQTRFARPYLWMLFRPGKSTHRNQI--------HSRAYIEFERPEDVLAFHEDFHGHVFVN---------EKGSQYKAMVEYAPYQRVPDLRVKKDGR--EGSILRDPDYLEFVDTLGKAAE--------LLPSADVQLERP------GSSREGVIVTPLMEYVRQKR 201          
BLAST of Gvermi5582.t1 vs. uniprot
Match: UPI001E1DF4ED (regulator of nonsense transcripts 3A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF4ED)

HSP 1 Score: 74.7 bits (182), Expect = 1.060e-10
Identity = 62/192 (32.29%), Postives = 92/192 (47.92%), Query Frame = 0
Query:   68 KLIVRRLPPTLTAEEFSSHAAPNGADKAIWTAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLEGTIENDPDYIKFLAELKGDAEREQSELAATLTSASTIVGRPTAIEKDNSPPRG--QVVTPLMEDVRARRRER 257
            K++VRRLPP+LT E F    +P       +  +Y  K +       S      S AY+ F+  ED ++F  +FD + FV+           G +Y A VE A +Q  P     R+P   +GTIE DPDY+KFL  L      E       + S  T + +  A E++    +G  +V TPL+E ++ RR E+
Sbjct:   24 KVVVRRLPPSLTGETFLEQVSPLPN----YDFFYFMKADL------SLGASAFSRAYINFQNYEDIANFRDKFDGYIFVD---------AKGNEYPAIVEFATFQKVPK-KKMRKPDSKKGTIEQDPDYVKFLDSLTNPETEE-------VVSLDTYLEQLEAKEREAKATKGGPKVTTPLIEFIKKRREEK 188          
BLAST of Gvermi5582.t1 vs. uniprot
Match: UPI001ED887A9 (regulator of nonsense transcripts 3B isoform X1 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED887A9)

HSP 1 Score: 72.0 bits (175), Expect = 9.210e-10
Identity = 58/197 (29.44%), Postives = 100/197 (50.76%), Query Frame = 0
Query:   68 KLIVRRLPPTLTAEEFSSHAAPNGADKAIWTAYYPGKVEAVGAVKRSAQVVRHS--VAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLEGTIENDPDYIKFLAELKGDAERE-QSELAATLTSASTIVGRPTAIEKDNSPPRGQ----VVTPLMEDVRARRRER 257
            K+++RRLPPT+T E+F    +P   +  ++ A            K  A + +HS   AY+ F + +D   F ++FD + F++N          G ++ A VE A +Q  P   SR Q  P  GTI++DPDY+ F+A++K   E    + + +T   +S ++     +E+  +  R +      TPL+E ++ R+ ER
Sbjct:   45 KVVIRRLPPTMTLEKFIDQVSPLPENDYLYFA------------KADASLGQHSFCTAYVNFVQPKDVFIFKEKFDDYIFIDN---------KGNEFPAVVEFAPFQKIPRKKSR-QRDPKCGTIDSDPDYLSFVAQVKQTVEEAPDAGIKSTCGKSSPLLSVQDVLEEIEAKERDRKCRKATTPLIEYIKQRKMER 219          
BLAST of Gvermi5582.t1 vs. uniprot
Match: A0A4S4KIG3_9AGAM (Smg4_UPF3 domain-containing protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KIG3_9AGAM)

HSP 1 Score: 68.6 bits (166), Expect = 1.070e-9
Identity = 47/138 (34.06%), Postives = 69/138 (50.00%), Query Frame = 0
Query:   67 VKLIVRRLPPTLTAEEFSSHAAPNGADKAI-WTAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLEGTIENDPDYIKFLAEL 203
            +K +VRRLPP L  + F     P  +++ + W  +YPGK+      K+  +    S AY+AF   +  + F Q +D   F + A         G + YA VE A +Q  PP   +R+P P   TIE D D+I F+A L
Sbjct:   44 LKTVVRRLPPNLPEDVFWQSVQPWVSEETVSWKMFYPGKIR-----KKYNKENLPSRAYIAFRSADQLAVFSQAYDGHTFRDKA---------GNESYAVVEFAPHQKVPP--EKRKPDPRNDTIEQDEDFISFIASL 165          
BLAST of Gvermi5582.t1 vs. uniprot
Match: A0A6A1VFC1_9ROSI (Regulator of nonsense transcripts UPF3 n=2 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VFC1_9ROSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.970e-9
Identity = 61/188 (32.45%), Postives = 90/188 (47.87%), Query Frame = 0
Query:   68 KLIVRRLPPTLTAEEFSSHAAPNGADKAIWTAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLEGTI-ENDPDYIKFLAELKGDAEREQSELAATLTSASTIVGRPTAIEKDNSPPRGQVVTPLMEDVRARR 254
            K+++RRLPP+LT  +         A +  W ++ PGK+        S +  R+S AY+ F++ ED   F + FD   FV          + G  Y   VE A     P +++++     EGTI + DPDY++FL  +   AE         L SA   + R  A E+  SP    +VTPLME VR +R
Sbjct:    9 KVVIRRLPPSLTKSDLFLQIEEKFAGRYNWFSFRPGKI--------SQKHQRNSRAYIDFKRPEDVFEFAEFFDGHVFVN---------EKGAQYKIAVEYAPSPRVPKLSTKKDVR--EGTIYKEDPDYMEFLKIIAKPAEH--------LPSAEIQLERREA-EQAGSPKETLIVTPLMEYVRQKR 168          
BLAST of Gvermi5582.t1 vs. uniprot
Match: A0A6J8EY75_MYTCO (UPF3 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EY75_MYTCO)

HSP 1 Score: 70.5 bits (171), Expect = 2.410e-9
Identity = 60/194 (30.93%), Postives = 94/194 (48.45%), Query Frame = 0
Query:   68 KLIVRRLPPTLTAEEFSSHAAPNGADKAIWTAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLE---GTIENDPDYIKFLAELKGDAEREQSELAATLTSASTIVGRPTAIEKDNSPPRG-QVVTPLMEDVRARRRER 257
            K+++RRLPP+LT E      +P  + +  +       V A  ++ ++A     + AY+ F+  ED  +F  QFD + FV+           G +Y A VE A YQ  P    RR+P  ++   G+IE DPDY+KFL  L+ +   E   + A L             EKD    +  +V TPL++ +R +R E+
Sbjct:   23 KVLIRRLPPSLTPETLLEQLSPLPSHEFYF-------VRADMSLGQNA----FTRAYINFQSYEDVYNFRDQFDGYVFVDG---------KGNEYSAIVELAPYQKVP----RRKPKKVDVKMGSIEQDPDYVKFLEYLQNEEAEETQTIEAYLEELENK-------EKDMKAKKSMKVTTPLIDYIRKKREEK 185          
BLAST of Gvermi5582.t1 vs. uniprot
Match: A0A8B6BKY6_MYTGA (Regulator of nonsense transcripts 3 n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BKY6_MYTGA)

HSP 1 Score: 69.3 bits (168), Expect = 7.580e-9
Identity = 60/194 (30.93%), Postives = 94/194 (48.45%), Query Frame = 0
Query:   68 KLIVRRLPPTLTAEEFSSHAAPNGADKAIWTAYYPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAKTVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLE---GTIENDPDYIKFLAELKGDAEREQSELAATLTSASTIVGRPTAIEKDNSPPRG-QVVTPLMEDVRARRRER 257
            K+++RRLPP+LT E      +P  + +  +       V A  ++ ++A     + AY+ F+  ED  +F  QFD + FV+           G +Y A VE A YQ  P    RR+P  ++   G+IE DPDY+KFL  L+ +   E   + A L             EKD    +  +V TPL++ +R +R E+
Sbjct:  512 KVLIRRLPPSLTPETLLEQLSPLPSHEFYF-------VRADMSLGQNA----FTRAYINFQSYEDVYNFRDQFDGYVFVDG---------KGNEYSAIVELAPYQKVP----RRKPKKVDVKMGSIEQDPDYVKFLEYLQNEEAEETQTIEAYLEELELK-------EKDMKAKKSMKVSTPLIDYIRKKREEK 674          
The following BLAST results are available for this feature:
BLAST of Gvermi5582.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYE9_9FLOR6.270e-12654.75Regulator of nonsense transcripts UPF3 n=1 Tax=Gra... [more]
R7QSJ8_CHOCR3.540e-3642.15Smg4_UPF3 domain-containing protein n=1 Tax=Chondr... [more]
A0A7S1XA88_9RHOD6.050e-1534.67Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
UPI000D1C37A91.940e-1133.33regulator of nonsense transcripts UPF3 n=2 Tax=Sel... [more]
UPI001E1DF4ED1.060e-1032.29regulator of nonsense transcripts 3A-like n=1 Tax=... [more]
UPI001ED887A99.210e-1029.44regulator of nonsense transcripts 3B isoform X1 n=... [more]
A0A4S4KIG3_9AGAM1.070e-934.06Smg4_UPF3 domain-containing protein n=1 Tax=Phelli... [more]
A0A6A1VFC1_9ROSI1.970e-932.45Regulator of nonsense transcripts UPF3 n=2 Tax=Mor... [more]
A0A6J8EY75_MYTCO2.410e-930.93UPF3 n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0... [more]
A0A8B6BKY6_MYTGA7.580e-930.93Regulator of nonsense transcripts 3 n=2 Tax=Mytilu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005120UPF3 domainPFAMPF03467Smg4_UPF3coord: 67..254
e-value: 1.8E-28
score: 99.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 67..174
e-value: 2.3E-19
score: 71.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..331
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..437
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 337..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 405..419
NoneNo IPR availablePANTHERPTHR13112:SF0FI21285P1coord: 62..268
NoneNo IPR availableCDDcd12455RRM_like_Smg4_UPF3coord: 68..169
e-value: 2.56436E-18
score: 77.678
IPR039722Nonsense-mediated mRNA decay protein 3PANTHERPTHR13112UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEINcoord: 62..268
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 68..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:642668..643981 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5582.t1Gvermi5582.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 642668..643981 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5582.t1 ID=Gvermi5582.t1|Name=Gvermi5582.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=438bp
MDRAAARRGRAAGDRPGAARPPPSGGRPRRRPPRPPPPQQQAAARLRPRP
RPKNRARKKPPAPSIAVKLIVRRLPPTLTAEEFSSHAAPNGADKAIWTAY
YPGKVEAVGAVKRSAQVVRHSVAYLAFEKLEDASHFFQQFDAFKFVENAK
TVDSSLQSGTDYYARVERAMYQATPPITSRRQPSPLEGTIENDPDYIKFL
AELKGDAEREQSELAATLTSASTIVGRPTAIEKDNSPPRGQVVTPLMEDV
RARRRERDERKKTKASIRGGRGKGRGGAPPPPLTPLSNKANDSAEAIKLG
ARRKKRRGADNASASKRDQPAQDRKSPKFPSNDRRNGQLRPADSSVSASA
PPNPTSSSPYANSTASVSNASNGKGNSSRGGAGGRSRYVRGQKGRGRYGQ
NGNGTVGVAARTENQNSDPLHGPVRVLRKEASVTNKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005120UPF3_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR039722Upf3
IPR035979RBD_domain_sf