Gvermi12999.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12999.t1
Unique NameGvermi12999.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length63
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_7218contigScGOVlb_7218:1..187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr34590
PFAMsPolyketide_cyc
Max annot lvl2836|Bacillariophyta
Evalue1.54e-08
EggNOG OGs2C4R1@1|root,2S3Y7@2759|Eukaryota,2XD0J@2836|Bacillariophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12999Gvermi12999Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_7218 1..187 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12999.t1.CDS1Gvermi12999.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_7218 1..187 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12999.t1.exon1Gvermi12999.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_7218 1..187 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12999.t1.start1Gvermi12999.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_7218 185..187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12999.t1Gvermi12999.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_7218 1..187 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12999.t1 ID=Gvermi12999.t1|Name=Gvermi12999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=63bp
MLHLVRFAFAFLAVAAVCCSAKKKNRNVPHGHFGKLKPYQPGPFDVKLTS
AEEAKLSAGSPVX
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spliced messenger RNA

>Gvermi12999.t1 ID=Gvermi12999.t1|Name=Gvermi12999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=187bp|location=Sequence derived from alignment at ScGOVlb_7218:1..187- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACACCTCGTCCGATTCGCCTTTGCCTTTCTGGCTGTTGCTGCAGT
TTGCTGCTCTGCCAAGAAGAAGAATCGCAACGTGCCGCATGGTCATTTTG
GAAAGCTGAAGCCGTACCAACCCGGTCCGTTTGACGTGAAACTGACCAGT
GCGGAAGAAGCCAAGCTTTCCGCTGGAAGTCCGGTCA
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protein sequence of Gvermi12999.t1

>Gvermi12999.t1 ID=Gvermi12999.t1|Name=Gvermi12999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=63bp
MLHLVRFAFAFLAVAAVCCSAKKKNRNVPHGHFGKLKPYQPGPFDVKLTS
AEEAKLSAGSPVX
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mRNA from alignment at ScGOVlb_7218:1..187-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12999.t1 ID=Gvermi12999.t1|Name=Gvermi12999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=187bp|location=Sequence derived from alignment at ScGOVlb_7218:1..187- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTACACCTCGTCCGATTCGCCTTTGCCTTTCTGGCTGTTGCTGCAGT
TTGCTGCTCTGCCAAGAAGAAGAATCGCAACGTGCCGCATGGTCATTTTG
GAAAGCTGAAGCCGTACCAACCCGGTCCGTTTGACGTGAAACTGACCAGT
GCGGAAGAAGCCAAGCTTTCCGCTGGAAGTCCGGTCA
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Coding sequence (CDS) from alignment at ScGOVlb_7218:1..187-

>Gvermi12999.t1 ID=Gvermi12999.t1|Name=Gvermi12999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=187bp|location=Sequence derived from alignment at ScGOVlb_7218:1..187- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTACACCTCGTCCGATTCGCCTTTGCCTTTCTGGCTGTTGCTGCAGT
TTGCTGCTCTGCCAAGAAGAAGAATCGCAACGTGCCGCATGGTCATTTTG
GAAAGCTGAAGCCGTACCAACCCGGTCCGTTTGACGTGAAACTGACCAGT
GCGGAAGAAGCCAAGCTTTCCGCTGGAAGTCCGGTCA
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