Gvermi13884.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13884.t1
Unique Name	Gvermi13884.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	310

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_647	contig	ScGOVlb_647:643728..644657 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN07558
PFAMs	Bromo_TP,TAF8_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14649
KEGG Pathway	ko03022,map03022
Evalue	1.13e-13
EggNOG OGs	KOG2389@1\|root,KOG2389@2759\|Eukaryota,37K2F@33090\|Viridiplantae,3G9QF@35493\|Streptophyta
Description	Transcription initiation factor TFIID subunit
COG category	K
BRITE	ko00000,ko00001,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13884	Gvermi13884	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_647 643728..644657 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13884.t1.start1	Gvermi13884.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_647 643728..643730 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13884.t1.CDS1	Gvermi13884.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_647 643728..644657 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13884.t1.exon1	Gvermi13884.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_647 643728..644657 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13884.t1.stop1	Gvermi13884.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_647 644655..644657 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13884.t1	Gvermi13884.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_647 643728..644657 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_647:643728..644657+
coding sequence from alignment at ScGOVlb_647:643728..644657+

mRNA sequence

>Gvermi13884.t1 ID=Gvermi13884.t1|Name=Gvermi13884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=310bp
MADGVDAFTHHLMRVACAQIVYATAEDVSSKKSLTKHAPKRQPVSASTIS
VTDSVSDSLADIAKAFIERLSNTSTRFTAHNGRTMSNVLDVLHAIEWLSH
HTRSGVKDVVKYAMFTEVPFPYKVPSFPAPVPPTSKPDDLYVNSEETAES
TTKGYVETWMPPFPSPHTYIATPVYTTANGRKKDALDVGETRRAVEKSLA
QLKEAQRKDDASTSLLAAAAAAVSDNPFFAPPVSGSKRIYDEDLADPPRD
LVETGFSVDANTTTDSNMRDVSDIPGKSSSNEQKKQRVERILAEAGNELE
DPELATSGQ*

spliced messenger RNA

>Gvermi13884.t1 ID=Gvermi13884.t1|Name=Gvermi13884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_647:643728..644657+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATGGAGTAGATGCATTTACCCACCATCTCATGCGCGTGGCGTG
TGCGCAAATCGTTTACGCGACAGCCGAAGATGTGTCGTCAAAGAAAAGCC
TTACCAAGCATGCTCCAAAGAGGCAACCTGTGTCTGCCTCTACGATTTCC
GTCACTGACAGCGTTTCTGATTCTTTGGCCGACATAGCGAAGGCTTTCAT
TGAACGACTAAGCAACACTTCAACGAGATTCACGGCCCACAATGGCCGCA
CTATGTCTAATGTATTAGATGTGCTGCACGCTATAGAATGGCTTTCTCAC
CACACCCGTTCCGGAGTCAAGGATGTAGTTAAATATGCCATGTTTACAGA
GGTTCCATTTCCATACAAAGTGCCATCCTTCCCTGCTCCCGTGCCACCCA
CGTCCAAGCCGGACGATTTATACGTGAATAGCGAGGAAACCGCTGAATCA
ACGACGAAGGGTTATGTCGAAACATGGATGCCGCCATTTCCGAGTCCGCA
CACCTACATCGCAACCCCTGTCTACACCACTGCAAACGGAAGGAAAAAGG
ATGCTTTGGACGTGGGCGAAACACGTAGAGCAGTCGAAAAGTCTTTGGCC
CAGTTGAAAGAAGCCCAACGAAAGGACGACGCTAGTACCTCATTGTTAGC
TGCTGCGGCTGCTGCCGTCTCCGATAATCCCTTCTTTGCTCCGCCTGTGA
GCGGAAGCAAGAGGATATACGACGAGGACTTGGCTGATCCCCCACGAGAT
TTGGTGGAAACAGGCTTTTCCGTGGACGCCAACACTACCACAGACTCAAA
TATGAGAGATGTTTCAGATATTCCGGGCAAGAGTAGTTCAAACGAACAAA
AGAAACAAAGAGTTGAACGCATCTTGGCAGAAGCAGGAAATGAACTAGAA
GACCCCGAACTCGCAACATCTGGACAATAA

protein sequence of Gvermi13884.t1

>Gvermi13884.t1 ID=Gvermi13884.t1|Name=Gvermi13884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
MADGVDAFTHHLMRVACAQIVYATAEDVSSKKSLTKHAPKRQPVSASTIS
VTDSVSDSLADIAKAFIERLSNTSTRFTAHNGRTMSNVLDVLHAIEWLSH
HTRSGVKDVVKYAMFTEVPFPYKVPSFPAPVPPTSKPDDLYVNSEETAES
TTKGYVETWMPPFPSPHTYIATPVYTTANGRKKDALDVGETRRAVEKSLA
QLKEAQRKDDASTSLLAAAAAAVSDNPFFAPPVSGSKRIYDEDLADPPRD
LVETGFSVDANTTTDSNMRDVSDIPGKSSSNEQKKQRVERILAEAGNELE
DPELATSGQ*

mRNA from alignment at ScGOVlb_647:643728..644657+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13884.t1 ID=Gvermi13884.t1|Name=Gvermi13884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_647:643728..644657+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGATGGAGTAGATGCATTTACCCACCATCTCATGCGCGTGGCGTG
TGCGCAAATCGTTTACGCGACAGCCGAAGATGTGTCGTCAAAGAAAAGCC
TTACCAAGCATGCTCCAAAGAGGCAACCTGTGTCTGCCTCTACGATTTCC
GTCACTGACAGCGTTTCTGATTCTTTGGCCGACATAGCGAAGGCTTTCAT
TGAACGACTAAGCAACACTTCAACGAGATTCACGGCCCACAATGGCCGCA
CTATGTCTAATGTATTAGATGTGCTGCACGCTATAGAATGGCTTTCTCAC
CACACCCGTTCCGGAGTCAAGGATGTAGTTAAATATGCCATGTTTACAGA
GGTTCCATTTCCATACAAAGTGCCATCCTTCCCTGCTCCCGTGCCACCCA
CGTCCAAGCCGGACGATTTATACGTGAATAGCGAGGAAACCGCTGAATCA
ACGACGAAGGGTTATGTCGAAACATGGATGCCGCCATTTCCGAGTCCGCA
CACCTACATCGCAACCCCTGTCTACACCACTGCAAACGGAAGGAAAAAGG
ATGCTTTGGACGTGGGCGAAACACGTAGAGCAGTCGAAAAGTCTTTGGCC
CAGTTGAAAGAAGCCCAACGAAAGGACGACGCTAGTACCTCATTGTTAGC
TGCTGCGGCTGCTGCCGTCTCCGATAATCCCTTCTTTGCTCCGCCTGTGA
GCGGAAGCAAGAGGATATACGACGAGGACTTGGCTGATCCCCCACGAGAT
TTGGTGGAAACAGGCTTTTCCGTGGACGCCAACACTACCACAGACTCAAA
TATGAGAGATGTTTCAGATATTCCGGGCAAGAGTAGTTCAAACGAACAAA
AGAAACAAAGAGTTGAACGCATCTTGGCAGAAGCAGGAAATGAACTAGAA
GACCCCGAACTCGCAACATCTGGACAATAA

Coding sequence (CDS) from alignment at ScGOVlb_647:643728..644657+

>Gvermi13884.t1 ID=Gvermi13884.t1|Name=Gvermi13884.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=930bp|location=Sequence derived from alignment at ScGOVlb_647:643728..644657+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGATGGAGTAGATGCATTTACCCACCATCTCATGCGCGTGGCGTG
TGCGCAAATCGTTTACGCGACAGCCGAAGATGTGTCGTCAAAGAAAAGCC
TTACCAAGCATGCTCCAAAGAGGCAACCTGTGTCTGCCTCTACGATTTCC
GTCACTGACAGCGTTTCTGATTCTTTGGCCGACATAGCGAAGGCTTTCAT
TGAACGACTAAGCAACACTTCAACGAGATTCACGGCCCACAATGGCCGCA
CTATGTCTAATGTATTAGATGTGCTGCACGCTATAGAATGGCTTTCTCAC
CACACCCGTTCCGGAGTCAAGGATGTAGTTAAATATGCCATGTTTACAGA
GGTTCCATTTCCATACAAAGTGCCATCCTTCCCTGCTCCCGTGCCACCCA
CGTCCAAGCCGGACGATTTATACGTGAATAGCGAGGAAACCGCTGAATCA
ACGACGAAGGGTTATGTCGAAACATGGATGCCGCCATTTCCGAGTCCGCA
CACCTACATCGCAACCCCTGTCTACACCACTGCAAACGGAAGGAAAAAGG
ATGCTTTGGACGTGGGCGAAACACGTAGAGCAGTCGAAAAGTCTTTGGCC
CAGTTGAAAGAAGCCCAACGAAAGGACGACGCTAGTACCTCATTGTTAGC
TGCTGCGGCTGCTGCCGTCTCCGATAATCCCTTCTTTGCTCCGCCTGTGA
GCGGAAGCAAGAGGATATACGACGAGGACTTGGCTGATCCCCCACGAGAT
TTGGTGGAAACAGGCTTTTCCGTGGACGCCAACACTACCACAGACTCAAA
TATGAGAGATGTTTCAGATATTCCGGGCAAGAGTAGTTCAAACGAACAAA
AGAAACAAAGAGTTGAACGCATCTTGGCAGAAGCAGGAAATGAACTAGAA
GACCCCGAACTCGCAACATCTGGACAATAA