Gvermi13861.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13861.t1
Unique NameGvermi13861.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:396183..397130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5479.M3IJZ6
Preferred nameFPR3
PFAMsFKBP_C
Max annot lvl4751|Fungi
KEGG koko:K14826
GOsGO:0000003,GO:0000075,GO:0000412,GO:0000413,GO:0000414,GO:0000415,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006457,GO:0006464,GO:0006807,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0016043,GO:0016569,GO:0016570,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022607,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0033043,GO:0033044,GO:0033313,GO:0034622,GO:0034728,GO:0036211,GO:0040020,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045835,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0061077,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1903046,GO:1905268,GO:2000241,GO:2000242,GO:2001251
Evalue3.74e-25
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota,38CQE@33154|Opisthokonta,3NVTP@4751|Fungi,3QMYG@4890|Ascomycota,3RTUN@4891|Saccharomycetes,47AC2@766764|Debaryomycetaceae
EC5.2.1.8
DescriptionFK506-binding protein
COG categoryO
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13861Gvermi13861Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 396183..397130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13861.t1Gvermi13861.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 396183..397130 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13861.t1.start1Gvermi13861.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 396183..396185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13861.t1.CDS1Gvermi13861.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 396183..396266 +
Gvermi13861.t1.CDS2Gvermi13861.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 396354..397130 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13861.t1.exon1Gvermi13861.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 396183..396266 +
Gvermi13861.t1.exon2Gvermi13861.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 396354..397130 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13861.t1.intron1Gvermi13861.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 396267..396353 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13861.t1.stop1Gvermi13861.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 397128..397130 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13861.t1 ID=Gvermi13861.t1|Name=Gvermi13861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=287bp
MTFVGVEVQPKKVVWIDASADRHVFLSNACLVKHPKKENARVVLEIWKPE
NDEEPADEQESKRIAVAVLSALAENAILNLPITSRLGLSIAGKSATGAVI
HVVGNEYEFSEDDDEDEIDLGSGMMGVQVVIGEDDNDDTMSDDDDDSVSD
DDPSTLEKKKDANKKLVVRKQPSGLPIVNHRSGLKFQDIMIGSGKRVVPG
RNVAIKYTLRLESGKVIDKAEARKPFKFRLGVGECVKGFDIGVSGMREGG
ERHLIVPPDLAYGQHPPPGIPRNATLYFDVTVIKAF*
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spliced messenger RNA

>Gvermi13861.t1 ID=Gvermi13861.t1|Name=Gvermi13861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=861bp|location=Sequence derived from alignment at ScGOVlb_647:396183..397130+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTTGTCGGAGTTGAAGTGCAGCCCAAGAAGGTGGTATGGATCGA
TGCGTCCGCCGATCGTCACGTCTTTCTCAGTAACGCTTGCCTTGTCAAGC
ATCCGAAAAAGGAAAACGCTCGAGTCGTCCTGGAAATATGGAAGCCCGAA
AACGACGAAGAGCCCGCCGACGAGCAAGAGTCGAAACGAATTGCGGTAGC
GGTTCTGTCCGCGCTGGCTGAGAATGCCATTCTTAATCTACCGATTACGT
CTCGTCTTGGTCTTTCCATTGCCGGAAAGTCGGCCACAGGGGCGGTAATC
CACGTTGTTGGAAACGAATACGAGTTTTCAGAAGACGACGACGAAGACGA
AATCGACTTGGGTTCTGGCATGATGGGCGTGCAGGTTGTTATCGGAGAAG
ACGATAACGATGATACTATGTCGGACGACGACGATGATTCTGTGAGCGAT
GACGATCCCTCAACGTTAGAAAAAAAAAAAGACGCAAACAAGAAGCTCGT
CGTCCGAAAACAACCCTCAGGATTGCCAATCGTTAACCACCGGTCAGGAC
TCAAGTTCCAAGATATTATGATAGGATCTGGCAAAAGAGTGGTGCCAGGA
AGAAATGTAGCTATCAAGTACACTCTAAGATTAGAAAGCGGAAAGGTTAT
TGATAAGGCAGAGGCACGGAAGCCGTTCAAGTTTCGTTTGGGTGTTGGGG
AATGTGTCAAAGGGTTTGACATTGGTGTGAGCGGCATGCGCGAAGGTGGC
GAACGTCATTTAATCGTTCCTCCGGACCTAGCATACGGTCAACATCCACC
ACCAGGCATTCCGCGGAACGCCACGCTGTACTTTGATGTTACTGTGATCA
AGGCATTCTGA
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protein sequence of Gvermi13861.t1

>Gvermi13861.t1 ID=Gvermi13861.t1|Name=Gvermi13861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=287bp
MTFVGVEVQPKKVVWIDASADRHVFLSNACLVKHPKKENARVVLEIWKPE
NDEEPADEQESKRIAVAVLSALAENAILNLPITSRLGLSIAGKSATGAVI
HVVGNEYEFSEDDDEDEIDLGSGMMGVQVVIGEDDNDDTMSDDDDDSVSD
DDPSTLEKKKDANKKLVVRKQPSGLPIVNHRSGLKFQDIMIGSGKRVVPG
RNVAIKYTLRLESGKVIDKAEARKPFKFRLGVGECVKGFDIGVSGMREGG
ERHLIVPPDLAYGQHPPPGIPRNATLYFDVTVIKAF*
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mRNA from alignment at ScGOVlb_647:396183..397130+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13861.t1 ID=Gvermi13861.t1|Name=Gvermi13861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_647:396183..397130+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTTTGTCGGAGTTGAAGTGCAGCCCAAGAAGGTGGTATGGATCGA
TGCGTCCGCCGATCGTCACGTCTTTCTCAGTAACGTAAGTTTTCCAACAA
CTGCTGTCAAAGTGTGTATTGCCCTTTTGCTGACCTCACCGCTGGCGGCG
CGTTTGCTTTGAACTGGAAAGGCTTGCCTTGTCAAGCATCCGAAAAAGGA
AAACGCTCGAGTCGTCCTGGAAATATGGAAGCCCGAAAACGACGAAGAGC
CCGCCGACGAGCAAGAGTCGAAACGAATTGCGGTAGCGGTTCTGTCCGCG
CTGGCTGAGAATGCCATTCTTAATCTACCGATTACGTCTCGTCTTGGTCT
TTCCATTGCCGGAAAGTCGGCCACAGGGGCGGTAATCCACGTTGTTGGAA
ACGAATACGAGTTTTCAGAAGACGACGACGAAGACGAAATCGACTTGGGT
TCTGGCATGATGGGCGTGCAGGTTGTTATCGGAGAAGACGATAACGATGA
TACTATGTCGGACGACGACGATGATTCTGTGAGCGATGACGATCCCTCAA
CGTTAGAAAAAAAAAAAGACGCAAACAAGAAGCTCGTCGTCCGAAAACAA
CCCTCAGGATTGCCAATCGTTAACCACCGGTCAGGACTCAAGTTCCAAGA
TATTATGATAGGATCTGGCAAAAGAGTGGTGCCAGGAAGAAATGTAGCTA
TCAAGTACACTCTAAGATTAGAAAGCGGAAAGGTTATTGATAAGGCAGAG
GCACGGAAGCCGTTCAAGTTTCGTTTGGGTGTTGGGGAATGTGTCAAAGG
GTTTGACATTGGTGTGAGCGGCATGCGCGAAGGTGGCGAACGTCATTTAA
TCGTTCCTCCGGACCTAGCATACGGTCAACATCCACCACCAGGCATTCCG
CGGAACGCCACGCTGTACTTTGATGTTACTGTGATCAAGGCATTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:396183..397130+

>Gvermi13861.t1 ID=Gvermi13861.t1|Name=Gvermi13861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=861bp|location=Sequence derived from alignment at ScGOVlb_647:396183..397130+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTTTGTCGGAGTTGAAGTGCAGCCCAAGAAGGTGGTATGGATCGA
TGCGTCCGCCGATCGTCACGTCTTTCTCAGTAACGCTTGCCTTGTCAAGC
ATCCGAAAAAGGAAAACGCTCGAGTCGTCCTGGAAATATGGAAGCCCGAA
AACGACGAAGAGCCCGCCGACGAGCAAGAGTCGAAACGAATTGCGGTAGC
GGTTCTGTCCGCGCTGGCTGAGAATGCCATTCTTAATCTACCGATTACGT
CTCGTCTTGGTCTTTCCATTGCCGGAAAGTCGGCCACAGGGGCGGTAATC
CACGTTGTTGGAAACGAATACGAGTTTTCAGAAGACGACGACGAAGACGA
AATCGACTTGGGTTCTGGCATGATGGGCGTGCAGGTTGTTATCGGAGAAG
ACGATAACGATGATACTATGTCGGACGACGACGATGATTCTGTGAGCGAT
GACGATCCCTCAACGTTAGAAAAAAAAAAAGACGCAAACAAGAAGCTCGT
CGTCCGAAAACAACCCTCAGGATTGCCAATCGTTAACCACCGGTCAGGAC
TCAAGTTCCAAGATATTATGATAGGATCTGGCAAAAGAGTGGTGCCAGGA
AGAAATGTAGCTATCAAGTACACTCTAAGATTAGAAAGCGGAAAGGTTAT
TGATAAGGCAGAGGCACGGAAGCCGTTCAAGTTTCGTTTGGGTGTTGGGG
AATGTGTCAAAGGGTTTGACATTGGTGTGAGCGGCATGCGCGAAGGTGGC
GAACGTCATTTAATCGTTCCTCCGGACCTAGCATACGGTCAACATCCACC
ACCAGGCATTCCGCGGAACGCCACGCTGTACTTTGATGTTACTGTGATCA
AGGCATTCTGA
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