Gvermi13962.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13962.t1
Unique NameGvermi13962.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1099269..1099682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4950.XP_003683310.1
Preferred nameERG28
PFAMsErg28
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006694,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0030674,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0060090,GO:0071704,GO:0097384,GO:0098827,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
Evalue2.01e-15
EggNOG OGsKOG3455@1|root,KOG3455@2759|Eukaryota,3A62N@33154|Opisthokonta,3P3HV@4751|Fungi,3QXN0@4890|Ascomycota,3RUFV@4891|Saccharomycetes,3S0ZN@4893|Saccharomycetaceae
Descriptionto Saccharomyces cerevisiae ERG28 (YER044C)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13962Gvermi13962Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1099269..1099682 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13962.t1.stop1Gvermi13962.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1099269..1099271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13962.t1.CDS1Gvermi13962.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1099269..1099682 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13962.t1.exon1Gvermi13962.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1099269..1099682 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13962.t1.start1Gvermi13962.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1099680..1099682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13962.t1Gvermi13962.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1099269..1099682 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13962.t1 ID=Gvermi13962.t1|Name=Gvermi13962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=138bp
MSVLSPHSPPMPIWVLITGVAGLSASIGAYLKPLSPHKTLYNRVPSTADP
AFARMYATWLLTSTAVRFGFFFAPQRGQETIVFWLAFATYLIALWHFFLE
IFVFRTAALRPGGLAPLVVASFSILWFTAVVAGIIES*
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spliced messenger RNA

>Gvermi13962.t1 ID=Gvermi13962.t1|Name=Gvermi13962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_647:1099269..1099682- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTTCTCTCGCCTCATAGCCCTCCAATGCCCATATGGGTTTTGAT
AACGGGCGTCGCAGGCCTATCTGCAAGCATCGGCGCCTACCTCAAGCCGC
TCTCACCCCACAAGACGCTGTACAATCGCGTGCCGTCCACGGCTGACCCT
GCTTTTGCGCGCATGTACGCAACGTGGCTTCTCACCTCCACCGCTGTCCG
CTTTGGCTTCTTCTTCGCTCCGCAGAGAGGGCAGGAGACTATTGTGTTCT
GGCTCGCGTTCGCAACGTACTTGATCGCATTGTGGCACTTTTTTCTCGAA
ATCTTCGTGTTCCGCACTGCCGCTTTGAGACCAGGCGGCTTGGCGCCGTT
GGTTGTGGCAAGCTTTAGCATTTTATGGTTCACGGCGGTCGTCGCCGGAA
TCATCGAGTCCTGA
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protein sequence of Gvermi13962.t1

>Gvermi13962.t1 ID=Gvermi13962.t1|Name=Gvermi13962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=138bp
MSVLSPHSPPMPIWVLITGVAGLSASIGAYLKPLSPHKTLYNRVPSTADP
AFARMYATWLLTSTAVRFGFFFAPQRGQETIVFWLAFATYLIALWHFFLE
IFVFRTAALRPGGLAPLVVASFSILWFTAVVAGIIES*
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mRNA from alignment at ScGOVlb_647:1099269..1099682-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13962.t1 ID=Gvermi13962.t1|Name=Gvermi13962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_647:1099269..1099682- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGTTCTCTCGCCTCATAGCCCTCCAATGCCCATATGGGTTTTGAT
AACGGGCGTCGCAGGCCTATCTGCAAGCATCGGCGCCTACCTCAAGCCGC
TCTCACCCCACAAGACGCTGTACAATCGCGTGCCGTCCACGGCTGACCCT
GCTTTTGCGCGCATGTACGCAACGTGGCTTCTCACCTCCACCGCTGTCCG
CTTTGGCTTCTTCTTCGCTCCGCAGAGAGGGCAGGAGACTATTGTGTTCT
GGCTCGCGTTCGCAACGTACTTGATCGCATTGTGGCACTTTTTTCTCGAA
ATCTTCGTGTTCCGCACTGCCGCTTTGAGACCAGGCGGCTTGGCGCCGTT
GGTTGTGGCAAGCTTTAGCATTTTATGGTTCACGGCGGTCGTCGCCGGAA
TCATCGAGTCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1099269..1099682-

>Gvermi13962.t1 ID=Gvermi13962.t1|Name=Gvermi13962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=414bp|location=Sequence derived from alignment at ScGOVlb_647:1099269..1099682- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGTTCTCTCGCCTCATAGCCCTCCAATGCCCATATGGGTTTTGAT
AACGGGCGTCGCAGGCCTATCTGCAAGCATCGGCGCCTACCTCAAGCCGC
TCTCACCCCACAAGACGCTGTACAATCGCGTGCCGTCCACGGCTGACCCT
GCTTTTGCGCGCATGTACGCAACGTGGCTTCTCACCTCCACCGCTGTCCG
CTTTGGCTTCTTCTTCGCTCCGCAGAGAGGGCAGGAGACTATTGTGTTCT
GGCTCGCGTTCGCAACGTACTTGATCGCATTGTGGCACTTTTTTCTCGAA
ATCTTCGTGTTCCGCACTGCCGCTTTGAGACCAGGCGGCTTGGCGCCGTT
GGTTGTGGCAAGCTTTAGCATTTTATGGTTCACGGCGGTCGTCGCCGGAA
TCATCGAGTCCTGA
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