Gvermi13846.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13846.t1
Unique NameGvermi13846.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length395
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:353558..354742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG148CT
Preferred nameDXR
PFAMsDXPR_C,DXP_redisom_C,DXP_reductoisom
Max annot lvl2759|Eukaryota
KEGG rclassRC01452
KEGG koko:K00099
KEGG ReactionR05688
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576
Evalue1.86e-166
EggNOG OGsCOG0020@1|root,2QPJ7@2759|Eukaryota
EC1.1.1.267
Description1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13846Gvermi13846Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 353558..354742 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13846.t1.stop1Gvermi13846.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 353558..353560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13846.t1.CDS1Gvermi13846.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 353558..354742 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13846.t1.exon1Gvermi13846.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 353558..354742 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13846.t1.start1Gvermi13846.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 354740..354742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13846.t1Gvermi13846.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 353558..354742 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13846.t1 ID=Gvermi13846.t1|Name=Gvermi13846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=395bp
LGSTGSIGTQTLDLVREVPQCFSVASLSAGSNVDLLVQQAREFSPDLVCV
LDAARLPELRQKLDAAGCAAVKATAGSDGVVQAAADTDAHVVVTGIVGCA
GLLPTVAAIRAGKDIALANKETLIAGGPVVVPLVKQYGVSMTAADSEHSA
IFQCLQGAPSNALRRIILTASGGAFRDWDAADLHKVTLADALKHPNWSMG
AKITIDSASLYNKAAEVIEAHYLFGADYDRIDAVIHKQSIIHSMVEFEDS
SVLAQLGWPDMRLPLLYAISWPHRIAVPSFKPLDLVRVGSLTFEAVDRQK
YPNMDLAYAAGRKGGTMTCVLNAANEAAVELFRQQKIHFLDIARINQAMM
DSHKRDFVQHPTLEDIVHMDELTRVYAREYVSSGQLAKRVATIQ*
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spliced messenger RNA

>Gvermi13846.t1 ID=Gvermi13846.t1|Name=Gvermi13846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1185bp|location=Sequence derived from alignment at ScGOVlb_647:353558..354742- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGGCTCCACCGGCTCCATCGGCACGCAGACGCTCGACCTGGTGCGCGA
GGTGCCGCAGTGCTTCTCCGTCGCCTCGCTGTCGGCCGGCTCCAACGTCG
ACCTGCTCGTGCAGCAGGCGCGCGAGTTCTCGCCCGACCTCGTGTGCGTG
CTCGACGCCGCGCGCCTGCCCGAGCTGCGCCAAAAGCTCGACGCCGCCGG
CTGCGCCGCCGTCAAGGCCACGGCCGGCAGCGACGGCGTGGTGCAGGCCG
CCGCCGACACGGACGCGCACGTCGTCGTCACCGGCATCGTGGGCTGTGCC
GGCCTGCTGCCCACCGTCGCCGCCATCCGCGCCGGAAAGGACATCGCGCT
GGCCAACAAGGAGACGCTCATCGCCGGCGGGCCCGTCGTCGTGCCGCTCG
TCAAGCAGTACGGCGTGAGCATGACCGCCGCCGACTCGGAGCACTCGGCC
ATCTTCCAGTGCCTGCAGGGCGCCCCTTCCAACGCGCTGCGCCGCATCAT
CCTCACCGCGTCGGGCGGCGCCTTCCGCGACTGGGACGCGGCTGATTTAC
ACAAAGTGACGCTTGCCGACGCGCTCAAGCACCCCAACTGGAGCATGGGC
GCCAAGATCACCATCGACTCGGCCAGCCTGTACAACAAGGCGGCCGAAGT
GATCGAGGCTCACTATCTTTTCGGCGCCGACTACGACCGCATTGACGCCG
TCATCCACAAGCAGTCCATCATCCACTCGATGGTGGAGTTTGAGGACTCG
TCCGTGCTGGCGCAACTCGGGTGGCCAGACATGCGGCTGCCGCTGCTGTA
CGCCATTTCGTGGCCGCATCGCATCGCCGTGCCGTCGTTCAAGCCGCTGG
ACCTGGTGCGCGTGGGGTCGCTGACGTTCGAGGCGGTGGACCGCCAAAAG
TACCCCAACATGGATCTGGCGTACGCGGCCGGGCGCAAAGGCGGCACCAT
GACGTGCGTGCTCAACGCGGCCAACGAGGCGGCCGTGGAGCTGTTTCGGC
AGCAAAAGATCCACTTTCTGGACATTGCGCGAATCAACCAGGCGATGATG
GACTCGCACAAACGCGACTTTGTGCAGCACCCGACGCTGGAGGACATTGT
GCACATGGACGAGCTCACAAGAGTTTACGCGCGCGAGTACGTGTCGTCGG
GGCAGCTGGCCAAGCGCGTGGCCACCATCCAGTGA
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protein sequence of Gvermi13846.t1

>Gvermi13846.t1 ID=Gvermi13846.t1|Name=Gvermi13846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=395bp
LGSTGSIGTQTLDLVREVPQCFSVASLSAGSNVDLLVQQAREFSPDLVCV
LDAARLPELRQKLDAAGCAAVKATAGSDGVVQAAADTDAHVVVTGIVGCA
GLLPTVAAIRAGKDIALANKETLIAGGPVVVPLVKQYGVSMTAADSEHSA
IFQCLQGAPSNALRRIILTASGGAFRDWDAADLHKVTLADALKHPNWSMG
AKITIDSASLYNKAAEVIEAHYLFGADYDRIDAVIHKQSIIHSMVEFEDS
SVLAQLGWPDMRLPLLYAISWPHRIAVPSFKPLDLVRVGSLTFEAVDRQK
YPNMDLAYAAGRKGGTMTCVLNAANEAAVELFRQQKIHFLDIARINQAMM
DSHKRDFVQHPTLEDIVHMDELTRVYAREYVSSGQLAKRVATIQ*
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mRNA from alignment at ScGOVlb_647:353558..354742-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13846.t1 ID=Gvermi13846.t1|Name=Gvermi13846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1185bp|location=Sequence derived from alignment at ScGOVlb_647:353558..354742- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGGCTCCACCGGCTCCATCGGCACGCAGACGCTCGACCTGGTGCGCGA
GGTGCCGCAGTGCTTCTCCGTCGCCTCGCTGTCGGCCGGCTCCAACGTCG
ACCTGCTCGTGCAGCAGGCGCGCGAGTTCTCGCCCGACCTCGTGTGCGTG
CTCGACGCCGCGCGCCTGCCCGAGCTGCGCCAAAAGCTCGACGCCGCCGG
CTGCGCCGCCGTCAAGGCCACGGCCGGCAGCGACGGCGTGGTGCAGGCCG
CCGCCGACACGGACGCGCACGTCGTCGTCACCGGCATCGTGGGCTGTGCC
GGCCTGCTGCCCACCGTCGCCGCCATCCGCGCCGGAAAGGACATCGCGCT
GGCCAACAAGGAGACGCTCATCGCCGGCGGGCCCGTCGTCGTGCCGCTCG
TCAAGCAGTACGGCGTGAGCATGACCGCCGCCGACTCGGAGCACTCGGCC
ATCTTCCAGTGCCTGCAGGGCGCCCCTTCCAACGCGCTGCGCCGCATCAT
CCTCACCGCGTCGGGCGGCGCCTTCCGCGACTGGGACGCGGCTGATTTAC
ACAAAGTGACGCTTGCCGACGCGCTCAAGCACCCCAACTGGAGCATGGGC
GCCAAGATCACCATCGACTCGGCCAGCCTGTACAACAAGGCGGCCGAAGT
GATCGAGGCTCACTATCTTTTCGGCGCCGACTACGACCGCATTGACGCCG
TCATCCACAAGCAGTCCATCATCCACTCGATGGTGGAGTTTGAGGACTCG
TCCGTGCTGGCGCAACTCGGGTGGCCAGACATGCGGCTGCCGCTGCTGTA
CGCCATTTCGTGGCCGCATCGCATCGCCGTGCCGTCGTTCAAGCCGCTGG
ACCTGGTGCGCGTGGGGTCGCTGACGTTCGAGGCGGTGGACCGCCAAAAG
TACCCCAACATGGATCTGGCGTACGCGGCCGGGCGCAAAGGCGGCACCAT
GACGTGCGTGCTCAACGCGGCCAACGAGGCGGCCGTGGAGCTGTTTCGGC
AGCAAAAGATCCACTTTCTGGACATTGCGCGAATCAACCAGGCGATGATG
GACTCGCACAAACGCGACTTTGTGCAGCACCCGACGCTGGAGGACATTGT
GCACATGGACGAGCTCACAAGAGTTTACGCGCGCGAGTACGTGTCGTCGG
GGCAGCTGGCCAAGCGCGTGGCCACCATCCAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:353558..354742-

>Gvermi13846.t1 ID=Gvermi13846.t1|Name=Gvermi13846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1185bp|location=Sequence derived from alignment at ScGOVlb_647:353558..354742- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGGCTCCACCGGCTCCATCGGCACGCAGACGCTCGACCTGGTGCGCGA
GGTGCCGCAGTGCTTCTCCGTCGCCTCGCTGTCGGCCGGCTCCAACGTCG
ACCTGCTCGTGCAGCAGGCGCGCGAGTTCTCGCCCGACCTCGTGTGCGTG
CTCGACGCCGCGCGCCTGCCCGAGCTGCGCCAAAAGCTCGACGCCGCCGG
CTGCGCCGCCGTCAAGGCCACGGCCGGCAGCGACGGCGTGGTGCAGGCCG
CCGCCGACACGGACGCGCACGTCGTCGTCACCGGCATCGTGGGCTGTGCC
GGCCTGCTGCCCACCGTCGCCGCCATCCGCGCCGGAAAGGACATCGCGCT
GGCCAACAAGGAGACGCTCATCGCCGGCGGGCCCGTCGTCGTGCCGCTCG
TCAAGCAGTACGGCGTGAGCATGACCGCCGCCGACTCGGAGCACTCGGCC
ATCTTCCAGTGCCTGCAGGGCGCCCCTTCCAACGCGCTGCGCCGCATCAT
CCTCACCGCGTCGGGCGGCGCCTTCCGCGACTGGGACGCGGCTGATTTAC
ACAAAGTGACGCTTGCCGACGCGCTCAAGCACCCCAACTGGAGCATGGGC
GCCAAGATCACCATCGACTCGGCCAGCCTGTACAACAAGGCGGCCGAAGT
GATCGAGGCTCACTATCTTTTCGGCGCCGACTACGACCGCATTGACGCCG
TCATCCACAAGCAGTCCATCATCCACTCGATGGTGGAGTTTGAGGACTCG
TCCGTGCTGGCGCAACTCGGGTGGCCAGACATGCGGCTGCCGCTGCTGTA
CGCCATTTCGTGGCCGCATCGCATCGCCGTGCCGTCGTTCAAGCCGCTGG
ACCTGGTGCGCGTGGGGTCGCTGACGTTCGAGGCGGTGGACCGCCAAAAG
TACCCCAACATGGATCTGGCGTACGCGGCCGGGCGCAAAGGCGGCACCAT
GACGTGCGTGCTCAACGCGGCCAACGAGGCGGCCGTGGAGCTGTTTCGGC
AGCAAAAGATCCACTTTCTGGACATTGCGCGAATCAACCAGGCGATGATG
GACTCGCACAAACGCGACTTTGTGCAGCACCCGACGCTGGAGGACATTGT
GCACATGGACGAGCTCACAAGAGTTTACGCGCGCGAGTACGTGTCGTCGG
GGCAGCTGGCCAAGCGCGTGGCCACCATCCAGTGA
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