Gvermi13967.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13967.t1
Unique NameGvermi13967.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:1174609..1175424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15726232
Preferred nameWBSCR27
PFAMsMethyltransf_11,Methyltransf_25
Max annot lvl2759|Eukaryota
Evalue3.31e-25
EggNOG OGsCOG0500@1|root,KOG1541@2759|Eukaryota,38WYI@33154|Opisthokonta,3BN4F@33208|Metazoa
DescriptionMethyltransferase domain
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13967Gvermi13967Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 1174609..1175424 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13967.t1.stop1Gvermi13967.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 1174609..1174611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13967.t1.CDS1Gvermi13967.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 1174609..1175424 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13967.t1.exon1Gvermi13967.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 1174609..1175424 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13967.t1.start1Gvermi13967.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 1175422..1175424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13967.t1Gvermi13967.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 1174609..1175424 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13967.t1 ID=Gvermi13967.t1|Name=Gvermi13967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=272bp
MSTGFQNYYTIPHQQKNPAAVTNESFLDFEIPDTPIFASEMESEELNNDL
QSFHTWSMSDIHSITMSTAPKENKIKAYRQWSKTYDEDVLGSKYVACDVA
AEKLSHVIRSDSTFRSLDNVNVFDAGCGTGLCAVSFQKVAEEFRLPYRLT
GVDFSEEMLREASHKNLYTELHCADMNRSLPIEPGSQHLVMSIGVFLEGH
CGPEALGNILTCLAIGGYAVISIRLKHYATLRKEFLGVISEVGCTVVEES
VCPYLGPVEALYLVLSKQKAE*
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spliced messenger RNA

>Gvermi13967.t1 ID=Gvermi13967.t1|Name=Gvermi13967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=816bp|location=Sequence derived from alignment at ScGOVlb_647:1174609..1175424- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACCGGTTTCCAAAATTATTATACTATCCCTCATCAGCAGAAGAA
TCCTGCTGCAGTAACGAACGAGTCATTTCTCGACTTCGAAATTCCCGACA
CACCAATATTCGCTTCAGAAATGGAATCCGAGGAGCTCAACAACGACTTG
CAGTCTTTTCACACTTGGAGCATGTCTGACATTCATTCGATCACCATGTC
GACAGCTCCTAAAGAGAACAAAATCAAAGCTTATCGTCAGTGGTCAAAAA
CCTACGATGAGGACGTCTTGGGCTCGAAATACGTGGCTTGTGACGTTGCA
GCAGAGAAGTTGTCCCACGTGATACGTTCTGACTCCACTTTTCGGAGTCT
AGATAATGTAAACGTGTTTGACGCTGGTTGTGGGACTGGCTTGTGTGCAG
TTTCATTTCAGAAGGTGGCTGAAGAATTTCGCCTTCCGTATCGTTTGACG
GGCGTGGACTTCAGTGAGGAGATGCTGCGCGAGGCAAGCCACAAGAATCT
ATATACTGAGCTCCACTGTGCGGATATGAATCGTTCTTTACCAATTGAAC
CGGGTTCACAACACCTGGTCATGTCGATTGGGGTGTTTTTAGAAGGCCAC
TGCGGCCCCGAGGCCCTAGGCAATATTCTCACATGCCTGGCCATAGGTGG
TTACGCTGTAATCTCCATTCGTCTGAAGCATTATGCAACTCTACGGAAAG
AATTTCTGGGAGTGATCTCAGAGGTGGGATGTACAGTGGTGGAGGAAAGT
GTTTGTCCATATTTGGGCCCAGTTGAAGCTCTATATTTGGTATTGAGTAA
ACAAAAGGCCGAATGA
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protein sequence of Gvermi13967.t1

>Gvermi13967.t1 ID=Gvermi13967.t1|Name=Gvermi13967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=272bp
MSTGFQNYYTIPHQQKNPAAVTNESFLDFEIPDTPIFASEMESEELNNDL
QSFHTWSMSDIHSITMSTAPKENKIKAYRQWSKTYDEDVLGSKYVACDVA
AEKLSHVIRSDSTFRSLDNVNVFDAGCGTGLCAVSFQKVAEEFRLPYRLT
GVDFSEEMLREASHKNLYTELHCADMNRSLPIEPGSQHLVMSIGVFLEGH
CGPEALGNILTCLAIGGYAVISIRLKHYATLRKEFLGVISEVGCTVVEES
VCPYLGPVEALYLVLSKQKAE*
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mRNA from alignment at ScGOVlb_647:1174609..1175424-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13967.t1 ID=Gvermi13967.t1|Name=Gvermi13967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=816bp|location=Sequence derived from alignment at ScGOVlb_647:1174609..1175424- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACCGGTTTCCAAAATTATTATACTATCCCTCATCAGCAGAAGAA
TCCTGCTGCAGTAACGAACGAGTCATTTCTCGACTTCGAAATTCCCGACA
CACCAATATTCGCTTCAGAAATGGAATCCGAGGAGCTCAACAACGACTTG
CAGTCTTTTCACACTTGGAGCATGTCTGACATTCATTCGATCACCATGTC
GACAGCTCCTAAAGAGAACAAAATCAAAGCTTATCGTCAGTGGTCAAAAA
CCTACGATGAGGACGTCTTGGGCTCGAAATACGTGGCTTGTGACGTTGCA
GCAGAGAAGTTGTCCCACGTGATACGTTCTGACTCCACTTTTCGGAGTCT
AGATAATGTAAACGTGTTTGACGCTGGTTGTGGGACTGGCTTGTGTGCAG
TTTCATTTCAGAAGGTGGCTGAAGAATTTCGCCTTCCGTATCGTTTGACG
GGCGTGGACTTCAGTGAGGAGATGCTGCGCGAGGCAAGCCACAAGAATCT
ATATACTGAGCTCCACTGTGCGGATATGAATCGTTCTTTACCAATTGAAC
CGGGTTCACAACACCTGGTCATGTCGATTGGGGTGTTTTTAGAAGGCCAC
TGCGGCCCCGAGGCCCTAGGCAATATTCTCACATGCCTGGCCATAGGTGG
TTACGCTGTAATCTCCATTCGTCTGAAGCATTATGCAACTCTACGGAAAG
AATTTCTGGGAGTGATCTCAGAGGTGGGATGTACAGTGGTGGAGGAAAGT
GTTTGTCCATATTTGGGCCCAGTTGAAGCTCTATATTTGGTATTGAGTAA
ACAAAAGGCCGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_647:1174609..1175424-

>Gvermi13967.t1 ID=Gvermi13967.t1|Name=Gvermi13967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=816bp|location=Sequence derived from alignment at ScGOVlb_647:1174609..1175424- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACCGGTTTCCAAAATTATTATACTATCCCTCATCAGCAGAAGAA
TCCTGCTGCAGTAACGAACGAGTCATTTCTCGACTTCGAAATTCCCGACA
CACCAATATTCGCTTCAGAAATGGAATCCGAGGAGCTCAACAACGACTTG
CAGTCTTTTCACACTTGGAGCATGTCTGACATTCATTCGATCACCATGTC
GACAGCTCCTAAAGAGAACAAAATCAAAGCTTATCGTCAGTGGTCAAAAA
CCTACGATGAGGACGTCTTGGGCTCGAAATACGTGGCTTGTGACGTTGCA
GCAGAGAAGTTGTCCCACGTGATACGTTCTGACTCCACTTTTCGGAGTCT
AGATAATGTAAACGTGTTTGACGCTGGTTGTGGGACTGGCTTGTGTGCAG
TTTCATTTCAGAAGGTGGCTGAAGAATTTCGCCTTCCGTATCGTTTGACG
GGCGTGGACTTCAGTGAGGAGATGCTGCGCGAGGCAAGCCACAAGAATCT
ATATACTGAGCTCCACTGTGCGGATATGAATCGTTCTTTACCAATTGAAC
CGGGTTCACAACACCTGGTCATGTCGATTGGGGTGTTTTTAGAAGGCCAC
TGCGGCCCCGAGGCCCTAGGCAATATTCTCACATGCCTGGCCATAGGTGG
TTACGCTGTAATCTCCATTCGTCTGAAGCATTATGCAACTCTACGGAAAG
AATTTCTGGGAGTGATCTCAGAGGTGGGATGTACAGTGGTGGAGGAAAGT
GTTTGTCCATATTTGGGCCCAGTTGAAGCTCTATATTTGGTATTGAGTAA
ACAAAAGGCCGAATGA
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