Gvermi7647.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7647.t1
Unique NameGvermi7647.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1203159..1204123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7647Gvermi7647Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1203159..1204235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7647.t1Gvermi7647.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1203159..1204123 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7647.t1.start1Gvermi7647.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1203159..1203161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7647.t1.CDS1Gvermi7647.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1203159..1203992 +
Gvermi7647.t1.CDS2Gvermi7647.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1204100..1204123 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7647.t1.exon1Gvermi7647.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1203159..1203992 +
Gvermi7647.t1.exon2Gvermi7647.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1204100..1204123 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7647.t1.intron1Gvermi7647.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1203993..1204099 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7647.t1.stop1Gvermi7647.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1204121..1204123 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7647.t1 ID=Gvermi7647.t1|Name=Gvermi7647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=286bp
MFIPVRAQIVSLSITFAFVTAEIGALLAAKTINRVFETSVLKKSRRVFLY
QHCRRLRLISAFVLLSFVGLEAFTSSVTSTEFRDVVLTENCKSMGFRDEN
NSKVDGNDIEVDLITFRCLQVNGTSFKLHSGRKSLDTSESVCDDTVMFEF
ERSSRVSRSLSEVKRMCEVSKLPELCPNEEDQVAFDVELCIHYLYEDNQL
FLSANLFQKDSLDQAGDFLVPKVHANLSSVMVSNIVSIALQENLKSNLQD
EVHFLRKIFTTTKQTRCEFVKDQREGTIRSVLVGS*
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spliced messenger RNA

>Gvermi7647.t1 ID=Gvermi7647.t1|Name=Gvermi7647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=858bp|location=Sequence derived from alignment at ScGOVlb_64:1203159..1204123+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATACCCGTTCGTGCCCAGATAGTAAGCTTATCGATAACTTTTGC
ATTTGTCACCGCTGAAATTGGGGCTCTTTTGGCAGCTAAAACCATCAACC
GAGTGTTTGAGACTTCGGTGTTAAAAAAAAGCAGAAGAGTATTTCTCTAT
CAGCATTGTCGGAGACTTAGGCTCATATCAGCTTTTGTTCTGCTATCTTT
TGTAGGCTTGGAAGCTTTTACATCATCAGTCACATCAACAGAGTTCAGAG
ATGTTGTTCTCACTGAAAACTGCAAGAGCATGGGGTTTCGTGATGAAAAC
AACTCCAAGGTTGATGGGAATGATATCGAAGTGGATCTTATAACCTTTCG
GTGCCTTCAAGTCAACGGAACGTCATTTAAGCTGCACTCTGGAAGGAAGA
GTCTCGACACATCAGAATCTGTTTGTGATGATACGGTAATGTTTGAGTTC
GAGAGATCCTCTCGAGTGTCCCGATCTTTGTCGGAGGTAAAGAGAATGTG
CGAAGTGTCCAAATTACCGGAGTTGTGCCCAAACGAAGAAGATCAAGTGG
CGTTCGATGTGGAATTGTGCATTCACTATCTTTACGAGGACAACCAGCTG
TTTTTGTCCGCGAACTTATTTCAGAAGGATAGTCTGGATCAGGCTGGCGA
CTTCTTGGTACCAAAAGTCCATGCAAACCTTTCCTCTGTGATGGTTTCGA
ACATAGTGAGCATTGCTCTGCAGGAAAACTTGAAGAGCAATCTTCAGGAC
GAAGTTCATTTTCTGAGGAAGATTTTCACGACCACCAAGCAAACGCGTTG
TGAGTTTGTCAAGGATCAAAGAGAGGGGACAATACGATCCGTATTGGTGG
GCTCATAA
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protein sequence of Gvermi7647.t1

>Gvermi7647.t1 ID=Gvermi7647.t1|Name=Gvermi7647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=286bp
MFIPVRAQIVSLSITFAFVTAEIGALLAAKTINRVFETSVLKKSRRVFLY
QHCRRLRLISAFVLLSFVGLEAFTSSVTSTEFRDVVLTENCKSMGFRDEN
NSKVDGNDIEVDLITFRCLQVNGTSFKLHSGRKSLDTSESVCDDTVMFEF
ERSSRVSRSLSEVKRMCEVSKLPELCPNEEDQVAFDVELCIHYLYEDNQL
FLSANLFQKDSLDQAGDFLVPKVHANLSSVMVSNIVSIALQENLKSNLQD
EVHFLRKIFTTTKQTRCEFVKDQREGTIRSVLVGS*
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mRNA from alignment at ScGOVlb_64:1203159..1204123+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7647.t1 ID=Gvermi7647.t1|Name=Gvermi7647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=965bp|location=Sequence derived from alignment at ScGOVlb_64:1203159..1204123+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCATACCCGTTCGTGCCCAGATAGTAAGCTTATCGATAACTTTTGC
ATTTGTCACCGCTGAAATTGGGGCTCTTTTGGCAGCTAAAACCATCAACC
GAGTGTTTGAGACTTCGGTGTTAAAAAAAAGCAGAAGAGTATTTCTCTAT
CAGCATTGTCGGAGACTTAGGCTCATATCAGCTTTTGTTCTGCTATCTTT
TGTAGGCTTGGAAGCTTTTACATCATCAGTCACATCAACAGAGTTCAGAG
ATGTTGTTCTCACTGAAAACTGCAAGAGCATGGGGTTTCGTGATGAAAAC
AACTCCAAGGTTGATGGGAATGATATCGAAGTGGATCTTATAACCTTTCG
GTGCCTTCAAGTCAACGGAACGTCATTTAAGCTGCACTCTGGAAGGAAGA
GTCTCGACACATCAGAATCTGTTTGTGATGATACGGTAATGTTTGAGTTC
GAGAGATCCTCTCGAGTGTCCCGATCTTTGTCGGAGGTAAAGAGAATGTG
CGAAGTGTCCAAATTACCGGAGTTGTGCCCAAACGAAGAAGATCAAGTGG
CGTTCGATGTGGAATTGTGCATTCACTATCTTTACGAGGACAACCAGCTG
TTTTTGTCCGCGAACTTATTTCAGAAGGATAGTCTGGATCAGGCTGGCGA
CTTCTTGGTACCAAAAGTCCATGCAAACCTTTCCTCTGTGATGGTTTCGA
ACATAGTGAGCATTGCTCTGCAGGAAAACTTGAAGAGCAATCTTCAGGAC
GAAGTTCATTTTCTGAGGAAGATTTTCACGACCACCAAGCAAACGCGTTG
TGAGTTTGTCAAGGATCAAAGAGAGGGGACAATAGTACCCACTTCTGTGT
TGGTTACTGTTGTGGGCTTGTGCACATTGTTCATTGTTACTTCTGCACTA
CTGATGATTTTCGTCCACCGACACCCGATGGTAAACCTCAGCGATCCGTA
TTGGTGGGCTCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1203159..1204123+

>Gvermi7647.t1 ID=Gvermi7647.t1|Name=Gvermi7647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=858bp|location=Sequence derived from alignment at ScGOVlb_64:1203159..1204123+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCATACCCGTTCGTGCCCAGATAGTAAGCTTATCGATAACTTTTGC
ATTTGTCACCGCTGAAATTGGGGCTCTTTTGGCAGCTAAAACCATCAACC
GAGTGTTTGAGACTTCGGTGTTAAAAAAAAGCAGAAGAGTATTTCTCTAT
CAGCATTGTCGGAGACTTAGGCTCATATCAGCTTTTGTTCTGCTATCTTT
TGTAGGCTTGGAAGCTTTTACATCATCAGTCACATCAACAGAGTTCAGAG
ATGTTGTTCTCACTGAAAACTGCAAGAGCATGGGGTTTCGTGATGAAAAC
AACTCCAAGGTTGATGGGAATGATATCGAAGTGGATCTTATAACCTTTCG
GTGCCTTCAAGTCAACGGAACGTCATTTAAGCTGCACTCTGGAAGGAAGA
GTCTCGACACATCAGAATCTGTTTGTGATGATACGGTAATGTTTGAGTTC
GAGAGATCCTCTCGAGTGTCCCGATCTTTGTCGGAGGTAAAGAGAATGTG
CGAAGTGTCCAAATTACCGGAGTTGTGCCCAAACGAAGAAGATCAAGTGG
CGTTCGATGTGGAATTGTGCATTCACTATCTTTACGAGGACAACCAGCTG
TTTTTGTCCGCGAACTTATTTCAGAAGGATAGTCTGGATCAGGCTGGCGA
CTTCTTGGTACCAAAAGTCCATGCAAACCTTTCCTCTGTGATGGTTTCGA
ACATAGTGAGCATTGCTCTGCAGGAAAACTTGAAGAGCAATCTTCAGGAC
GAAGTTCATTTTCTGAGGAAGATTTTCACGACCACCAAGCAAACGCGTTG
TGAGTTTGTCAAGGATCAAAGAGAGGGGACAATACGATCCGTATTGGTGG
GCTCATAA
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