Gvermi7616.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7616.t1
Unique NameGvermi7616.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:543320..544654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7616Gvermi7616Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 543320..544654 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7616.t1.stop1Gvermi7616.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 543320..543322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7616.t1.CDS1Gvermi7616.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 543320..544654 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7616.t1.exon1Gvermi7616.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 543320..544654 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7616.t1.start1Gvermi7616.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 544652..544654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7616.t1Gvermi7616.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 543320..544654 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7616.t1 ID=Gvermi7616.t1|Name=Gvermi7616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=445bp
MNTDINFVNAHYQSIPAAQDSGFSFNHEENKKMYHNFNLVGLFRGLKTFA
VTALVVAISMIVTRKLSVSLHSNHFRKFRMASKLSESFNFDSHRHFDNRQ
YMKPFRVLNSISGLRVRSNQPPVDITTLGSQGNLKPFPDMFVRKERSCSK
VPDFVLDERVLTGQCSQRSLCRARILVHKEKGQVVIKAGYYIYTVDGKHR
TVDSETISKIGNTSSKKVLSWAKSLIAGLGTKLDDVNCPVTVEMIVQSIT
DSMKSVVACPRTGDPLCEALLPVKKCTCSSFTGGTEEENACLEFIRSNPD
IQSLADLHEGCHNAVFIYQRVNVSLPICETTCASNPMIKHRVFMEFWVQS
DTRVEHVEDCISAALIPAYNTLYSSIPSCDDIQGEVMYGPSFLYLVAGSY
EGNIPEKAVQIAKNHGCALTFVFFEEKGFDSFQDIVDESCNLSL*
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spliced messenger RNA

>Gvermi7616.t1 ID=Gvermi7616.t1|Name=Gvermi7616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_64:543320..544654- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACTGACATTAACTTTGTCAACGCTCACTATCAATCCATCCCTGC
TGCCCAGGACTCAGGTTTCTCGTTCAATCATGAAGAAAACAAGAAAATGT
ATCACAATTTCAACTTAGTTGGATTGTTTCGTGGTCTCAAAACTTTTGCT
GTGACGGCTCTCGTAGTTGCAATATCTATGATTGTTACCAGGAAATTAAG
TGTTTCTCTCCACAGCAATCACTTTCGAAAATTTCGAATGGCTTCCAAAC
TCTCAGAGAGCTTTAACTTTGATTCCCATCGCCATTTTGACAATCGACAA
TACATGAAACCATTTCGGGTGCTGAACTCGATCTCTGGTTTACGGGTTCG
CTCAAATCAGCCGCCAGTAGATATTACCACTCTTGGTTCACAAGGCAATT
TAAAGCCATTTCCAGACATGTTTGTTCGAAAAGAGAGATCATGCTCAAAG
GTACCAGATTTTGTCTTAGATGAAAGGGTTTTGACCGGACAGTGTAGCCA
GAGAAGTTTATGCAGAGCTCGGATACTTGTTCACAAGGAGAAGGGTCAAG
TTGTAATTAAAGCCGGGTACTATATTTACACAGTGGACGGAAAACATCGT
ACGGTAGACTCTGAAACGATAAGCAAAATCGGAAATACGTCAAGCAAAAA
GGTCCTGAGCTGGGCAAAATCGCTAATTGCTGGCCTCGGCACTAAATTGG
ATGATGTAAATTGCCCCGTTACTGTGGAAATGATAGTGCAGTCCATAACA
GACTCCATGAAGTCGGTAGTCGCTTGTCCAAGAACAGGGGACCCACTCTG
CGAGGCATTATTACCTGTCAAGAAATGTACTTGCTCTAGTTTTACAGGTG
GAACAGAGGAAGAAAACGCGTGTCTGGAGTTCATTCGATCGAACCCGGAC
ATTCAAAGCTTGGCTGATCTGCACGAAGGGTGTCACAATGCTGTATTCAT
ATATCAGAGAGTGAATGTATCTCTTCCAATCTGCGAAACAACGTGCGCAT
CCAACCCGATGATAAAACACAGAGTTTTCATGGAGTTCTGGGTTCAGTCA
GATACACGAGTAGAACATGTGGAAGACTGTATTTCGGCTGCTCTCATTCC
CGCTTACAACACTTTGTACTCAAGTATTCCTTCATGCGATGACATTCAGG
GTGAAGTAATGTATGGACCATCATTTCTCTACTTGGTTGCTGGTTCATAC
GAAGGCAATATTCCCGAAAAGGCAGTCCAAATTGCAAAAAACCACGGGTG
TGCATTAACTTTTGTTTTCTTTGAAGAAAAAGGCTTTGATTCTTTTCAGG
ACATCGTTGACGAAAGCTGTAATTTAAGTCTTTAA
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protein sequence of Gvermi7616.t1

>Gvermi7616.t1 ID=Gvermi7616.t1|Name=Gvermi7616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=445bp
MNTDINFVNAHYQSIPAAQDSGFSFNHEENKKMYHNFNLVGLFRGLKTFA
VTALVVAISMIVTRKLSVSLHSNHFRKFRMASKLSESFNFDSHRHFDNRQ
YMKPFRVLNSISGLRVRSNQPPVDITTLGSQGNLKPFPDMFVRKERSCSK
VPDFVLDERVLTGQCSQRSLCRARILVHKEKGQVVIKAGYYIYTVDGKHR
TVDSETISKIGNTSSKKVLSWAKSLIAGLGTKLDDVNCPVTVEMIVQSIT
DSMKSVVACPRTGDPLCEALLPVKKCTCSSFTGGTEEENACLEFIRSNPD
IQSLADLHEGCHNAVFIYQRVNVSLPICETTCASNPMIKHRVFMEFWVQS
DTRVEHVEDCISAALIPAYNTLYSSIPSCDDIQGEVMYGPSFLYLVAGSY
EGNIPEKAVQIAKNHGCALTFVFFEEKGFDSFQDIVDESCNLSL*
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mRNA from alignment at ScGOVlb_64:543320..544654-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7616.t1 ID=Gvermi7616.t1|Name=Gvermi7616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_64:543320..544654- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATACTGACATTAACTTTGTCAACGCTCACTATCAATCCATCCCTGC
TGCCCAGGACTCAGGTTTCTCGTTCAATCATGAAGAAAACAAGAAAATGT
ATCACAATTTCAACTTAGTTGGATTGTTTCGTGGTCTCAAAACTTTTGCT
GTGACGGCTCTCGTAGTTGCAATATCTATGATTGTTACCAGGAAATTAAG
TGTTTCTCTCCACAGCAATCACTTTCGAAAATTTCGAATGGCTTCCAAAC
TCTCAGAGAGCTTTAACTTTGATTCCCATCGCCATTTTGACAATCGACAA
TACATGAAACCATTTCGGGTGCTGAACTCGATCTCTGGTTTACGGGTTCG
CTCAAATCAGCCGCCAGTAGATATTACCACTCTTGGTTCACAAGGCAATT
TAAAGCCATTTCCAGACATGTTTGTTCGAAAAGAGAGATCATGCTCAAAG
GTACCAGATTTTGTCTTAGATGAAAGGGTTTTGACCGGACAGTGTAGCCA
GAGAAGTTTATGCAGAGCTCGGATACTTGTTCACAAGGAGAAGGGTCAAG
TTGTAATTAAAGCCGGGTACTATATTTACACAGTGGACGGAAAACATCGT
ACGGTAGACTCTGAAACGATAAGCAAAATCGGAAATACGTCAAGCAAAAA
GGTCCTGAGCTGGGCAAAATCGCTAATTGCTGGCCTCGGCACTAAATTGG
ATGATGTAAATTGCCCCGTTACTGTGGAAATGATAGTGCAGTCCATAACA
GACTCCATGAAGTCGGTAGTCGCTTGTCCAAGAACAGGGGACCCACTCTG
CGAGGCATTATTACCTGTCAAGAAATGTACTTGCTCTAGTTTTACAGGTG
GAACAGAGGAAGAAAACGCGTGTCTGGAGTTCATTCGATCGAACCCGGAC
ATTCAAAGCTTGGCTGATCTGCACGAAGGGTGTCACAATGCTGTATTCAT
ATATCAGAGAGTGAATGTATCTCTTCCAATCTGCGAAACAACGTGCGCAT
CCAACCCGATGATAAAACACAGAGTTTTCATGGAGTTCTGGGTTCAGTCA
GATACACGAGTAGAACATGTGGAAGACTGTATTTCGGCTGCTCTCATTCC
CGCTTACAACACTTTGTACTCAAGTATTCCTTCATGCGATGACATTCAGG
GTGAAGTAATGTATGGACCATCATTTCTCTACTTGGTTGCTGGTTCATAC
GAAGGCAATATTCCCGAAAAGGCAGTCCAAATTGCAAAAAACCACGGGTG
TGCATTAACTTTTGTTTTCTTTGAAGAAAAAGGCTTTGATTCTTTTCAGG
ACATCGTTGACGAAAGCTGTAATTTAAGTCTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:543320..544654-

>Gvermi7616.t1 ID=Gvermi7616.t1|Name=Gvermi7616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1335bp|location=Sequence derived from alignment at ScGOVlb_64:543320..544654- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATACTGACATTAACTTTGTCAACGCTCACTATCAATCCATCCCTGC
TGCCCAGGACTCAGGTTTCTCGTTCAATCATGAAGAAAACAAGAAAATGT
ATCACAATTTCAACTTAGTTGGATTGTTTCGTGGTCTCAAAACTTTTGCT
GTGACGGCTCTCGTAGTTGCAATATCTATGATTGTTACCAGGAAATTAAG
TGTTTCTCTCCACAGCAATCACTTTCGAAAATTTCGAATGGCTTCCAAAC
TCTCAGAGAGCTTTAACTTTGATTCCCATCGCCATTTTGACAATCGACAA
TACATGAAACCATTTCGGGTGCTGAACTCGATCTCTGGTTTACGGGTTCG
CTCAAATCAGCCGCCAGTAGATATTACCACTCTTGGTTCACAAGGCAATT
TAAAGCCATTTCCAGACATGTTTGTTCGAAAAGAGAGATCATGCTCAAAG
GTACCAGATTTTGTCTTAGATGAAAGGGTTTTGACCGGACAGTGTAGCCA
GAGAAGTTTATGCAGAGCTCGGATACTTGTTCACAAGGAGAAGGGTCAAG
TTGTAATTAAAGCCGGGTACTATATTTACACAGTGGACGGAAAACATCGT
ACGGTAGACTCTGAAACGATAAGCAAAATCGGAAATACGTCAAGCAAAAA
GGTCCTGAGCTGGGCAAAATCGCTAATTGCTGGCCTCGGCACTAAATTGG
ATGATGTAAATTGCCCCGTTACTGTGGAAATGATAGTGCAGTCCATAACA
GACTCCATGAAGTCGGTAGTCGCTTGTCCAAGAACAGGGGACCCACTCTG
CGAGGCATTATTACCTGTCAAGAAATGTACTTGCTCTAGTTTTACAGGTG
GAACAGAGGAAGAAAACGCGTGTCTGGAGTTCATTCGATCGAACCCGGAC
ATTCAAAGCTTGGCTGATCTGCACGAAGGGTGTCACAATGCTGTATTCAT
ATATCAGAGAGTGAATGTATCTCTTCCAATCTGCGAAACAACGTGCGCAT
CCAACCCGATGATAAAACACAGAGTTTTCATGGAGTTCTGGGTTCAGTCA
GATACACGAGTAGAACATGTGGAAGACTGTATTTCGGCTGCTCTCATTCC
CGCTTACAACACTTTGTACTCAAGTATTCCTTCATGCGATGACATTCAGG
GTGAAGTAATGTATGGACCATCATTTCTCTACTTGGTTGCTGGTTCATAC
GAAGGCAATATTCCCGAAAAGGCAGTCCAAATTGCAAAAAACCACGGGTG
TGCATTAACTTTTGTTTTCTTTGAAGAAAAAGGCTTTGATTCTTTTCAGG
ACATCGTTGACGAAAGCTGTAATTTAAGTCTTTAA
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