Gvermi7640.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7640.t1
Unique NameGvermi7640.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1177557..1178204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_11037T0
Preferred namePCL1
PFAMsCyclin_N
Max annot lvl4751|Fungi
KEGG koko:K06656,ko:K06657
KEGG Pathwayko04111,map04111
GOsGO:0000079,GO:0000082,GO:0000083,GO:0000131,GO:0000278,GO:0000307,GO:0001932,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005933,GO:0005934,GO:0005935,GO:0006355,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0016043,GO:0016239,GO:0016241,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0022402,GO:0030234,GO:0030427,GO:0031106,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031399,GO:0032185,GO:0032268,GO:0032878,GO:0032991,GO:0042325,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044424,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045859,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051252,GO:0051338,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071840,GO:0071900,GO:0080090,GO:0098772,GO:1902494,GO:1902554,GO:1902911,GO:1903047,GO:1903506,GO:1904029,GO:1990234,GO:2000112,GO:2001141
Evalue4.78e-07
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota,39UTS@33154|Opisthokonta,3NYEI@4751|Fungi,1GXI1@112252|Fungi incertae sedis
DescriptionCyclin
COG categoryD
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7640Gvermi7640Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1177557..1178204 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7640.t1.stop1Gvermi7640.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1177557..1177559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7640.t1.CDS1Gvermi7640.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1177557..1178204 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7640.t1.exon1Gvermi7640.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1177557..1178204 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7640.t1.start1Gvermi7640.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1178202..1178204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7640.t1Gvermi7640.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1177557..1178204 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7640.t1 ID=Gvermi7640.t1|Name=Gvermi7640.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=216bp
MDTEIKIPIWFYPKTRKALLDVLECYMEQLFPESEDSGQNETFNPEDISI
PQLNKIELLRTMMWNVNVSRSVVLVALFYLEKVEKISKTEIRSDSLVFSK
LFLACFVLAMKQLEDRPPGNTMVSWISQIDLKELNLLELEVMKMLNYDLF
ISYTEFAEYTMKIMDTICSENVNTKWIECETINSAKKMLNEILRKREVSQ
PVSKKKKTRSLSPRT*
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spliced messenger RNA

>Gvermi7640.t1 ID=Gvermi7640.t1|Name=Gvermi7640.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=648bp|location=Sequence derived from alignment at ScGOVlb_64:1177557..1178204- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACTGAGATAAAAATTCCAATTTGGTTCTATCCAAAAACTAGAAA
AGCACTTCTAGATGTTCTGGAATGCTACATGGAACAACTTTTCCCGGAAA
GCGAAGATTCCGGGCAAAATGAAACCTTCAACCCTGAGGATATTTCAATT
CCCCAGCTCAACAAAATCGAACTCTTGCGTACAATGATGTGGAATGTAAA
TGTTTCACGGTCAGTTGTACTGGTCGCATTATTCTACTTGGAAAAAGTGG
AAAAGATTTCAAAGACAGAAATAAGATCGGACTCTTTAGTGTTTTCAAAG
CTTTTTCTTGCATGTTTTGTCTTGGCTATGAAACAGCTTGAAGATAGACC
TCCTGGAAATACGATGGTATCCTGGATTTCCCAGATTGATTTGAAGGAAC
TAAATCTGCTAGAACTTGAGGTTATGAAAATGTTAAATTACGATTTATTT
ATCTCGTATACGGAGTTCGCAGAATATACGATGAAGATTATGGACACTAT
TTGTTCGGAAAATGTAAATACCAAGTGGATAGAATGTGAAACCATCAATA
GCGCGAAAAAGATGCTGAATGAGATTCTCCGAAAACGTGAAGTCTCTCAA
CCTGTCTCCAAGAAGAAAAAGACGCGTAGCCTGTCTCCCAGAACTTGA
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protein sequence of Gvermi7640.t1

>Gvermi7640.t1 ID=Gvermi7640.t1|Name=Gvermi7640.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=216bp
MDTEIKIPIWFYPKTRKALLDVLECYMEQLFPESEDSGQNETFNPEDISI
PQLNKIELLRTMMWNVNVSRSVVLVALFYLEKVEKISKTEIRSDSLVFSK
LFLACFVLAMKQLEDRPPGNTMVSWISQIDLKELNLLELEVMKMLNYDLF
ISYTEFAEYTMKIMDTICSENVNTKWIECETINSAKKMLNEILRKREVSQ
PVSKKKKTRSLSPRT*
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mRNA from alignment at ScGOVlb_64:1177557..1178204-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7640.t1 ID=Gvermi7640.t1|Name=Gvermi7640.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=648bp|location=Sequence derived from alignment at ScGOVlb_64:1177557..1178204- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACACTGAGATAAAAATTCCAATTTGGTTCTATCCAAAAACTAGAAA
AGCACTTCTAGATGTTCTGGAATGCTACATGGAACAACTTTTCCCGGAAA
GCGAAGATTCCGGGCAAAATGAAACCTTCAACCCTGAGGATATTTCAATT
CCCCAGCTCAACAAAATCGAACTCTTGCGTACAATGATGTGGAATGTAAA
TGTTTCACGGTCAGTTGTACTGGTCGCATTATTCTACTTGGAAAAAGTGG
AAAAGATTTCAAAGACAGAAATAAGATCGGACTCTTTAGTGTTTTCAAAG
CTTTTTCTTGCATGTTTTGTCTTGGCTATGAAACAGCTTGAAGATAGACC
TCCTGGAAATACGATGGTATCCTGGATTTCCCAGATTGATTTGAAGGAAC
TAAATCTGCTAGAACTTGAGGTTATGAAAATGTTAAATTACGATTTATTT
ATCTCGTATACGGAGTTCGCAGAATATACGATGAAGATTATGGACACTAT
TTGTTCGGAAAATGTAAATACCAAGTGGATAGAATGTGAAACCATCAATA
GCGCGAAAAAGATGCTGAATGAGATTCTCCGAAAACGTGAAGTCTCTCAA
CCTGTCTCCAAGAAGAAAAAGACGCGTAGCCTGTCTCCCAGAACTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1177557..1178204-

>Gvermi7640.t1 ID=Gvermi7640.t1|Name=Gvermi7640.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=648bp|location=Sequence derived from alignment at ScGOVlb_64:1177557..1178204- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACACTGAGATAAAAATTCCAATTTGGTTCTATCCAAAAACTAGAAA
AGCACTTCTAGATGTTCTGGAATGCTACATGGAACAACTTTTCCCGGAAA
GCGAAGATTCCGGGCAAAATGAAACCTTCAACCCTGAGGATATTTCAATT
CCCCAGCTCAACAAAATCGAACTCTTGCGTACAATGATGTGGAATGTAAA
TGTTTCACGGTCAGTTGTACTGGTCGCATTATTCTACTTGGAAAAAGTGG
AAAAGATTTCAAAGACAGAAATAAGATCGGACTCTTTAGTGTTTTCAAAG
CTTTTTCTTGCATGTTTTGTCTTGGCTATGAAACAGCTTGAAGATAGACC
TCCTGGAAATACGATGGTATCCTGGATTTCCCAGATTGATTTGAAGGAAC
TAAATCTGCTAGAACTTGAGGTTATGAAAATGTTAAATTACGATTTATTT
ATCTCGTATACGGAGTTCGCAGAATATACGATGAAGATTATGGACACTAT
TTGTTCGGAAAATGTAAATACCAAGTGGATAGAATGTGAAACCATCAATA
GCGCGAAAAAGATGCTGAATGAGATTCTCCGAAAACGTGAAGTCTCTCAA
CCTGTCTCCAAGAAGAAAAAGACGCGTAGCCTGTCTCCCAGAACTTGA
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