Gvermi7667.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7667.t1
Unique NameGvermi7667.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1623099..1624172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7667Gvermi7667Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1623099..1624172 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7667.t1.stop1Gvermi7667.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1623099..1623101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7667.t1.CDS1Gvermi7667.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1623099..1624172 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7667.t1.exon1Gvermi7667.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1623099..1624172 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7667.t1.start1Gvermi7667.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1624170..1624172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7667.t1Gvermi7667.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1623099..1624172 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7667.t1 ID=Gvermi7667.t1|Name=Gvermi7667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=358bp
MYVRLVCYKKMVVIGVKSQFVSLFITLATAVAELCWTTFVLLFITHQEQR
KLETGSSLSVRGHQRKIILVLAACVIAFVVIEIVVGAQIEDDLTMDPFIE
PCLQTGINTGKEFTSAEQPLKSFTAQTSCSKFKNFRLEIFLSNISLTSPI
VSCGEDRVFELHIRDQPMRKLKQAKPYCGEDFWGYQFCSFTRLQNDVFSF
TDPLYEDEMSANETKFTDVKLYFQPESQDKISQRLITIISNGETHTDIDA
ILYRVLLGSRQATCTFFEARRVTRVPGAVVGLLVSIWCCSIILFVGLTCC
ERKVMFDLNNSCDWSKVLLPPRGISNENIVDATVSVENVNETPVYVLQLR
RGTVAEK*
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spliced messenger RNA

>Gvermi7667.t1 ID=Gvermi7667.t1|Name=Gvermi7667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_64:1623099..1624172- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGTGCGTCTGGTTTGCTACAAGAAAATGGTTGTCATTGGCGTCAA
GTCTCAGTTTGTTTCGCTTTTCATCACTCTCGCTACTGCCGTAGCAGAGC
TCTGCTGGACGACTTTTGTGCTGCTTTTCATTACCCACCAAGAACAGCGC
AAACTAGAAACAGGAAGTTCACTTTCTGTTCGTGGACATCAGAGAAAAAT
TATTCTAGTTCTGGCTGCCTGTGTCATTGCTTTTGTTGTTATTGAGATTG
TTGTTGGCGCTCAAATTGAAGACGACTTGACCATGGACCCATTCATTGAA
CCTTGCTTGCAGACGGGAATCAATACTGGAAAAGAGTTCACGTCAGCGGA
GCAACCATTGAAAAGCTTTACTGCGCAAACCTCATGCTCAAAGTTCAAGA
ATTTCCGGTTGGAGATTTTTCTGTCGAATATCAGTCTTACCTCTCCTATT
GTGTCGTGTGGGGAGGACCGTGTTTTCGAACTTCATATTCGGGATCAACC
TATGCGGAAGTTAAAACAGGCAAAGCCATACTGCGGTGAGGATTTTTGGG
GGTATCAGTTTTGCTCATTTACAAGACTTCAAAATGATGTTTTCAGTTTT
ACGGACCCTTTATATGAAGATGAAATGTCAGCAAATGAAACTAAATTCAC
AGACGTGAAGCTCTACTTTCAACCAGAATCGCAAGACAAAATTAGTCAGA
GACTAATAACAATAATTTCTAATGGTGAAACCCACACGGATATTGATGCA
ATACTCTATAGAGTGCTTTTGGGTTCCAGACAAGCAACTTGCACGTTCTT
TGAAGCCCGTCGTGTCACCCGAGTCCCAGGCGCTGTTGTGGGTCTGTTGG
TTTCTATTTGGTGTTGCTCAATCATTCTATTTGTAGGCTTGACGTGCTGC
GAAAGGAAGGTAATGTTTGACTTGAACAATTCATGCGACTGGTCAAAGGT
ACTACTGCCTCCGAGAGGTATAAGCAATGAGAACATTGTTGATGCGACAG
TCTCTGTCGAAAATGTCAATGAGACCCCCGTTTACGTTCTGCAGTTGCGG
AGAGGTACAGTTGCAGAGAAGTAA
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protein sequence of Gvermi7667.t1

>Gvermi7667.t1 ID=Gvermi7667.t1|Name=Gvermi7667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=358bp
MYVRLVCYKKMVVIGVKSQFVSLFITLATAVAELCWTTFVLLFITHQEQR
KLETGSSLSVRGHQRKIILVLAACVIAFVVIEIVVGAQIEDDLTMDPFIE
PCLQTGINTGKEFTSAEQPLKSFTAQTSCSKFKNFRLEIFLSNISLTSPI
VSCGEDRVFELHIRDQPMRKLKQAKPYCGEDFWGYQFCSFTRLQNDVFSF
TDPLYEDEMSANETKFTDVKLYFQPESQDKISQRLITIISNGETHTDIDA
ILYRVLLGSRQATCTFFEARRVTRVPGAVVGLLVSIWCCSIILFVGLTCC
ERKVMFDLNNSCDWSKVLLPPRGISNENIVDATVSVENVNETPVYVLQLR
RGTVAEK*
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mRNA from alignment at ScGOVlb_64:1623099..1624172-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7667.t1 ID=Gvermi7667.t1|Name=Gvermi7667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_64:1623099..1624172- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTATGTGCGTCTGGTTTGCTACAAGAAAATGGTTGTCATTGGCGTCAA
GTCTCAGTTTGTTTCGCTTTTCATCACTCTCGCTACTGCCGTAGCAGAGC
TCTGCTGGACGACTTTTGTGCTGCTTTTCATTACCCACCAAGAACAGCGC
AAACTAGAAACAGGAAGTTCACTTTCTGTTCGTGGACATCAGAGAAAAAT
TATTCTAGTTCTGGCTGCCTGTGTCATTGCTTTTGTTGTTATTGAGATTG
TTGTTGGCGCTCAAATTGAAGACGACTTGACCATGGACCCATTCATTGAA
CCTTGCTTGCAGACGGGAATCAATACTGGAAAAGAGTTCACGTCAGCGGA
GCAACCATTGAAAAGCTTTACTGCGCAAACCTCATGCTCAAAGTTCAAGA
ATTTCCGGTTGGAGATTTTTCTGTCGAATATCAGTCTTACCTCTCCTATT
GTGTCGTGTGGGGAGGACCGTGTTTTCGAACTTCATATTCGGGATCAACC
TATGCGGAAGTTAAAACAGGCAAAGCCATACTGCGGTGAGGATTTTTGGG
GGTATCAGTTTTGCTCATTTACAAGACTTCAAAATGATGTTTTCAGTTTT
ACGGACCCTTTATATGAAGATGAAATGTCAGCAAATGAAACTAAATTCAC
AGACGTGAAGCTCTACTTTCAACCAGAATCGCAAGACAAAATTAGTCAGA
GACTAATAACAATAATTTCTAATGGTGAAACCCACACGGATATTGATGCA
ATACTCTATAGAGTGCTTTTGGGTTCCAGACAAGCAACTTGCACGTTCTT
TGAAGCCCGTCGTGTCACCCGAGTCCCAGGCGCTGTTGTGGGTCTGTTGG
TTTCTATTTGGTGTTGCTCAATCATTCTATTTGTAGGCTTGACGTGCTGC
GAAAGGAAGGTAATGTTTGACTTGAACAATTCATGCGACTGGTCAAAGGT
ACTACTGCCTCCGAGAGGTATAAGCAATGAGAACATTGTTGATGCGACAG
TCTCTGTCGAAAATGTCAATGAGACCCCCGTTTACGTTCTGCAGTTGCGG
AGAGGTACAGTTGCAGAGAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1623099..1624172-

>Gvermi7667.t1 ID=Gvermi7667.t1|Name=Gvermi7667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1074bp|location=Sequence derived from alignment at ScGOVlb_64:1623099..1624172- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTATGTGCGTCTGGTTTGCTACAAGAAAATGGTTGTCATTGGCGTCAA
GTCTCAGTTTGTTTCGCTTTTCATCACTCTCGCTACTGCCGTAGCAGAGC
TCTGCTGGACGACTTTTGTGCTGCTTTTCATTACCCACCAAGAACAGCGC
AAACTAGAAACAGGAAGTTCACTTTCTGTTCGTGGACATCAGAGAAAAAT
TATTCTAGTTCTGGCTGCCTGTGTCATTGCTTTTGTTGTTATTGAGATTG
TTGTTGGCGCTCAAATTGAAGACGACTTGACCATGGACCCATTCATTGAA
CCTTGCTTGCAGACGGGAATCAATACTGGAAAAGAGTTCACGTCAGCGGA
GCAACCATTGAAAAGCTTTACTGCGCAAACCTCATGCTCAAAGTTCAAGA
ATTTCCGGTTGGAGATTTTTCTGTCGAATATCAGTCTTACCTCTCCTATT
GTGTCGTGTGGGGAGGACCGTGTTTTCGAACTTCATATTCGGGATCAACC
TATGCGGAAGTTAAAACAGGCAAAGCCATACTGCGGTGAGGATTTTTGGG
GGTATCAGTTTTGCTCATTTACAAGACTTCAAAATGATGTTTTCAGTTTT
ACGGACCCTTTATATGAAGATGAAATGTCAGCAAATGAAACTAAATTCAC
AGACGTGAAGCTCTACTTTCAACCAGAATCGCAAGACAAAATTAGTCAGA
GACTAATAACAATAATTTCTAATGGTGAAACCCACACGGATATTGATGCA
ATACTCTATAGAGTGCTTTTGGGTTCCAGACAAGCAACTTGCACGTTCTT
TGAAGCCCGTCGTGTCACCCGAGTCCCAGGCGCTGTTGTGGGTCTGTTGG
TTTCTATTTGGTGTTGCTCAATCATTCTATTTGTAGGCTTGACGTGCTGC
GAAAGGAAGGTAATGTTTGACTTGAACAATTCATGCGACTGGTCAAAGGT
ACTACTGCCTCCGAGAGGTATAAGCAATGAGAACATTGTTGATGCGACAG
TCTCTGTCGAAAATGTCAATGAGACCCCCGTTTACGTTCTGCAGTTGCGG
AGAGGTACAGTTGCAGAGAAGTAA
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