Gvermi7676.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7676.t1
Unique NameGvermi7676.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1885508..1886808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog443255.SCLAV_0318
Max annot lvl201174|Actinobacteria
Evalue2.43e-38
EggNOG OGsCOG2357@1|root,COG2357@2|Bacteria,2I30R@201174|Actinobacteria
DescriptionRelA SpoT domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7676Gvermi7676Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1885508..1886808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7676.t1Gvermi7676.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1885508..1886808 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7676.t1.start1Gvermi7676.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1885508..1885510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7676.t1.CDS1Gvermi7676.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1885508..1885774 +
Gvermi7676.t1.CDS2Gvermi7676.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1885885..1886091 +
Gvermi7676.t1.CDS3Gvermi7676.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1886183..1886396 +
Gvermi7676.t1.CDS4Gvermi7676.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1886476..1886543 +
Gvermi7676.t1.CDS5Gvermi7676.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1886629..1886808 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7676.t1.exon1Gvermi7676.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1885508..1885774 +
Gvermi7676.t1.exon2Gvermi7676.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1885885..1886091 +
Gvermi7676.t1.exon3Gvermi7676.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1886183..1886396 +
Gvermi7676.t1.exon4Gvermi7676.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1886476..1886543 +
Gvermi7676.t1.exon5Gvermi7676.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1886629..1886808 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7676.t1.intron1Gvermi7676.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1885775..1885884 +
Gvermi7676.t1.intron2Gvermi7676.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1886092..1886182 +
Gvermi7676.t1.intron3Gvermi7676.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1886397..1886475 +
Gvermi7676.t1.intron4Gvermi7676.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1886544..1886628 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7676.t1.stop1Gvermi7676.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1886806..1886808 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7676.t1 ID=Gvermi7676.t1|Name=Gvermi7676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=312bp
MGAAFSTGHDTWGYRQWYTTQSLRQLKSTGSNYVQISVYTKMPNISALSA
AQQTDDESIRYIVRVVKRMGFRVFLKPVVEIEGHTWRGFIKGHPLWFEEV
YRPFISHMARIAQEEDIEIFSVGSEYRDSEQRVWEWKKVIDAVKQIYTGR
ITYIANHDSYKKFGLWHRLDYISISAYFQLMPGVRGVSPNMTETKRMWRY
IAGKVRQWHQESGLTNKKVLLAEVGVQSKGDGVVYRVPWDWNVKAPVNFY
EQKKMYEGICGGFRYEKWVAGILFWNWELQPYAGTYYPSSSDYTPQNKPA
QQVMKRCFERG*
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spliced messenger RNA

>Gvermi7676.t1 ID=Gvermi7676.t1|Name=Gvermi7676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_64:1885508..1886808+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCAGCATTTTCCACTGGCCACGATACATGGGGATATCGTCAGTG
GTACACGACGCAATCTCTACGACAACTGAAAAGTACAGGCTCCAACTATG
TGCAGATCTCAGTGTACACAAAGATGCCTAATATATCCGCTTTGTCTGCC
GCACAGCAGACTGACGATGAATCCATTCGGTACATTGTGCGCGTCGTGAA
ACGCATGGGCTTTAGAGTGTTTCTAAAACCAGTTGTGGAGATTGAAGGAC
ACACCTGGAGAGGTTTTATTAAAGGGCATCCGTTGTGGTTTGAAGAAGTG
TACCGGCCGTTCATATCTCACATGGCACGCATTGCGCAGGAGGAAGACAT
TGAAATTTTTTCTGTTGGCTCCGAATATCGCGACAGTGAACAGCGTGTCT
GGGAATGGAAGAAGGTTATCGACGCCGTGAAGCAGATTTACACCGGTCGT
ATCACTTACATTGCCAATCACGATTCGTACAAAAAGTTCGGATTATGGCA
TCGTCTAGATTATATCTCTATCTCTGCCTACTTTCAATTGATGCCAGGTG
TACGCGGAGTATCTCCAAATATGACTGAGACGAAACGAATGTGGAGATAT
ATTGCTGGAAAGGTCAGACAATGGCATCAAGAGAGCGGACTTACCAATAA
GAAAGTGCTTCTCGCCGAGGTGGGGGTGCAGAGCAAAGGAGACGGAGTCG
TCTATCGTGTGCCATGGGACTGGAACGTGAAAGCACCAGTGAATTTTTAC
GAACAGAAGAAAATGTATGAAGGCATTTGCGGAGGTTTCAGATACGAGAA
ATGGGTGGCGGGAATATTGTTTTGGAACTGGGAGTTGCAACCATACGCCG
GAACATACTATCCCAGCTCAAGTGACTACACGCCACAAAACAAGCCAGCC
CAACAGGTAATGAAAAGATGCTTTGAGCGTGGATAG
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protein sequence of Gvermi7676.t1

>Gvermi7676.t1 ID=Gvermi7676.t1|Name=Gvermi7676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=312bp
MGAAFSTGHDTWGYRQWYTTQSLRQLKSTGSNYVQISVYTKMPNISALSA
AQQTDDESIRYIVRVVKRMGFRVFLKPVVEIEGHTWRGFIKGHPLWFEEV
YRPFISHMARIAQEEDIEIFSVGSEYRDSEQRVWEWKKVIDAVKQIYTGR
ITYIANHDSYKKFGLWHRLDYISISAYFQLMPGVRGVSPNMTETKRMWRY
IAGKVRQWHQESGLTNKKVLLAEVGVQSKGDGVVYRVPWDWNVKAPVNFY
EQKKMYEGICGGFRYEKWVAGILFWNWELQPYAGTYYPSSSDYTPQNKPA
QQVMKRCFERG*
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mRNA from alignment at ScGOVlb_64:1885508..1886808+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7676.t1 ID=Gvermi7676.t1|Name=Gvermi7676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1301bp|location=Sequence derived from alignment at ScGOVlb_64:1885508..1886808+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGCAGCATTTTCCACTGGCCACGATACATGGGGATATCGTCAGTG
GTACACGACGCAATCTCTACGACAACTGAAAAGTACAGGCTCCAACTATG
TGCAGATCTCAGTGTACACAAAGATGCCTAATATATCCGCTTTGTCTGCC
GCACAGCAGACTGACGATGAATCCATTCGGTACATTGTGCGCGTCGTGAA
ACGCATGGGCTTTAGAGTGTTTCTAAAACCAGTTGTGGAGATTGAAGGAC
ACACCTGGAGAGGTTTTGTAGGTTGCTGCCACGCCCTCGAGATTTCGCAT
CTTCCCTTCATGACGCTGACTGTGTTCTCTGTATTTTCTTTACTGTGTGC
TTTCGTGCGATGTTTAATTTGGTGAAGATTAAAGGGCATCCGTTGTGGTT
TGAAGAAGTGTACCGGCCGTTCATATCTCACATGGCACGCATTGCGCAGG
AGGAAGACATTGAAATTTTTTCTGTTGGCTCCGAATATCGCGACAGTGAA
CAGCGTGTCTGGGAATGGAAGAAGGTTATCGACGCCGTGAAGCAGATTTA
CACCGGTCGTATCACTTACATTGCCAATCACGATGTACGTGAAGTGCGAA
TAACCCCTCCGAGCACATTTATTTCCCTTCTAACTGCATTGCTTTTTCTC
TCGTTCACAAATTCTTTTCGAGAAGTCGTACAAAAAGTTCGGATTATGGC
ATCGTCTAGATTATATCTCTATCTCTGCCTACTTTCAATTGATGCCAGGT
GTACGCGGAGTATCTCCAAATATGACTGAGACGAAACGAATGTGGAGATA
TATTGCTGGAAAGGTCAGACAATGGCATCAAGAGAGCGGACTTACCAATA
AGAAAGTGCTTCTCGCCGAGGTGGGGGTGCAGAGCAAAGGTACGCCAAGA
TATTCCGATATTCATATCAAACGTTTCATCATCGTTATACAATTTGACTG
ACACCATGCTGCCTAAAGGAGACGGAGTCGTCTATCGTGTGCCATGGGAC
TGGAACGTGAAAGCACCAGTGAATTTTTACGAACAGGTACGCACCTTTCC
GTGCTATGAACGCAGATAAGCATAGAGTACTGACGGGTATGTGCTTGCGG
TGCGGTAAACGCGGACGACAGAAGAAAATGTATGAAGGCATTTGCGGAGG
TTTCAGATACGAGAAATGGGTGGCGGGAATATTGTTTTGGAACTGGGAGT
TGCAACCATACGCCGGAACATACTATCCCAGCTCAAGTGACTACACGCCA
CAAAACAAGCCAGCCCAACAGGTAATGAAAAGATGCTTTGAGCGTGGATA
G
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Coding sequence (CDS) from alignment at ScGOVlb_64:1885508..1886808+

>Gvermi7676.t1 ID=Gvermi7676.t1|Name=Gvermi7676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=936bp|location=Sequence derived from alignment at ScGOVlb_64:1885508..1886808+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGCAGCATTTTCCACTGGCCACGATACATGGGGATATCGTCAGTG
GTACACGACGCAATCTCTACGACAACTGAAAAGTACAGGCTCCAACTATG
TGCAGATCTCAGTGTACACAAAGATGCCTAATATATCCGCTTTGTCTGCC
GCACAGCAGACTGACGATGAATCCATTCGGTACATTGTGCGCGTCGTGAA
ACGCATGGGCTTTAGAGTGTTTCTAAAACCAGTTGTGGAGATTGAAGGAC
ACACCTGGAGAGGTTTTATTAAAGGGCATCCGTTGTGGTTTGAAGAAGTG
TACCGGCCGTTCATATCTCACATGGCACGCATTGCGCAGGAGGAAGACAT
TGAAATTTTTTCTGTTGGCTCCGAATATCGCGACAGTGAACAGCGTGTCT
GGGAATGGAAGAAGGTTATCGACGCCGTGAAGCAGATTTACACCGGTCGT
ATCACTTACATTGCCAATCACGATTCGTACAAAAAGTTCGGATTATGGCA
TCGTCTAGATTATATCTCTATCTCTGCCTACTTTCAATTGATGCCAGGTG
TACGCGGAGTATCTCCAAATATGACTGAGACGAAACGAATGTGGAGATAT
ATTGCTGGAAAGGTCAGACAATGGCATCAAGAGAGCGGACTTACCAATAA
GAAAGTGCTTCTCGCCGAGGTGGGGGTGCAGAGCAAAGGAGACGGAGTCG
TCTATCGTGTGCCATGGGACTGGAACGTGAAAGCACCAGTGAATTTTTAC
GAACAGAAGAAAATGTATGAAGGCATTTGCGGAGGTTTCAGATACGAGAA
ATGGGTGGCGGGAATATTGTTTTGGAACTGGGAGTTGCAACCATACGCCG
GAACATACTATCCCAGCTCAAGTGACTACACGCCACAAAACAAGCCAGCC
CAACAGGTAATGAAAAGATGCTTTGAGCGTGGATAG
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