Gvermi7714.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7714.t1
Unique NameGvermi7714.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length97
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:3363210..3364438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7714Gvermi7714Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 3363210..3364438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7714.t1Gvermi7714.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 3363210..3364438 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7714.t1.stop1Gvermi7714.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 3363210..3363212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7714.t1.CDS1Gvermi7714.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3363210..3363266 -
Gvermi7714.t1.CDS2Gvermi7714.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3363346..3363408 -
Gvermi7714.t1.CDS3Gvermi7714.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3363465..3363486 -
Gvermi7714.t1.CDS4Gvermi7714.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3363573..3363578 -
Gvermi7714.t1.CDS5Gvermi7714.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3363639..3363702 -
Gvermi7714.t1.CDS6Gvermi7714.t1.CDS6Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3363795..3363799 -
Gvermi7714.t1.CDS7Gvermi7714.t1.CDS7Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3364298..3364323 -
Gvermi7714.t1.CDS8Gvermi7714.t1.CDS8Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3364391..3364438 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7714.t1.exon1Gvermi7714.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3363210..3363266 -
Gvermi7714.t1.exon2Gvermi7714.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3363346..3363408 -
Gvermi7714.t1.exon3Gvermi7714.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3363465..3363486 -
Gvermi7714.t1.exon4Gvermi7714.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3363573..3363578 -
Gvermi7714.t1.exon5Gvermi7714.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3363639..3363702 -
Gvermi7714.t1.exon6Gvermi7714.t1.exon6Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3363795..3363799 -
Gvermi7714.t1.exon7Gvermi7714.t1.exon7Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3364298..3364323 -
Gvermi7714.t1.exon8Gvermi7714.t1.exon8Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3364391..3364438 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7714.t1.intron1Gvermi7714.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 3363267..3363345 -
Gvermi7714.t1.intron2Gvermi7714.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 3363409..3363464 -
Gvermi7714.t1.intron3Gvermi7714.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 3363487..3363572 -
Gvermi7714.t1.intron4Gvermi7714.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 3363579..3363638 -
Gvermi7714.t1.intron5Gvermi7714.t1.intron5Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 3363703..3363794 -
Gvermi7714.t1.intron6Gvermi7714.t1.intron6Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 3363800..3364297 -
Gvermi7714.t1.intron7Gvermi7714.t1.intron7Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 3364324..3364390 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7714.t1.start1Gvermi7714.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 3364436..3364438 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7714.t1 ID=Gvermi7714.t1|Name=Gvermi7714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=97bp
MNEPPISFFNPQVNFNGGLDGYIADTTSRMLLMPDDSVAVNGKSTGQCMT
ASLVQESKSVFIARRRLGESLEQFCYSRQLSYRKEIDVCFIIRRSI*
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spliced messenger RNA

>Gvermi7714.t1 ID=Gvermi7714.t1|Name=Gvermi7714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=291bp|location=Sequence derived from alignment at ScGOVlb_64:3363210..3364438- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGAGCCTCCGATAAGCTTCTTCAACCCTCAAGTCAACTTCAATGG
TGGTCTTGATGGTTATATCGCCGATACAACTTCTCGAATGCTTCTCATGC
CCGACGACTCTGTGGCTGTAAATGGAAAGTCAACAGGGCAATGTATGACT
GCTTCACTCGTGCAGGAATCCAAAAGTGTGTTTATTGCGAGGAGGCGCCT
TGGAGAATCATTGGAACAATTCTGTTACTCTAGACAATTGTCATACAGGA
AAGAAATCGACGTTTGCTTCATCATACGACGATCTATTTAA
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protein sequence of Gvermi7714.t1

>Gvermi7714.t1 ID=Gvermi7714.t1|Name=Gvermi7714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=97bp
MNEPPISFFNPQVNFNGGLDGYIADTTSRMLLMPDDSVAVNGKSTGQCMT
ASLVQESKSVFIARRRLGESLEQFCYSRQLSYRKEIDVCFIIRRSI*
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mRNA from alignment at ScGOVlb_64:3363210..3364438-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7714.t1 ID=Gvermi7714.t1|Name=Gvermi7714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1229bp|location=Sequence derived from alignment at ScGOVlb_64:3363210..3364438- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGAGCCTCCGATAAGCTTCTTCAACCCTCAAGTCAACTTCAATGT
ACGTTTCATTCCATGTTTTTCACATCTAAACTGTATCGATCTGACTGTGA
TCTTCCTGATTCTAGGGTGGTCTTGATGGTTATATCGCCGAGTACTTTCG
AGAATTGCAGTCGCATCTAGGCTTGACATGTTCATCTATATCTCTATTCG
CTCAAACAAACAACACGGGCTTCAACGCCTTCATCAAAAACCTTGCCGAA
TGCACCAACTACACTGCAGGTCAAGTACAAAAGTCGGCAAATTGCCGCTG
CGACATTGGTGTCGGAGGTTGGTTTACGACTGTTGAGCGTTATGGTAAGG
TAGACTTTGTTCAACCTTTTATACACGAAAGATATGTGGTATTTACTTCA
AGAGAAAACACTTCTGCATCAGCCAATCGTCTCTTCTTCATCGAGACTTT
CGACAGGGTATCATGGCTCTGCATTTTTGGCTTGTTCGTCATGTTTACCG
TCCTCAAGCTTTTGGACAAGGGTTTTGCTCCGGCAGGTTTGTACACTCCG
TCAACAAACAGGGGTAGCTTTCTTGTACGATTTTGCAGATATGTGATGAA
GACTCCAGTTCTCTACCGCTTGCGCAAAGGTATTCAGAGTACAAGTAAGT
CATTGATCTTCACTTTTCAACTGTGTGGTTATGATGTGCATTTAGACAAC
TTGCTGATCATTCTTCGTCATGCTTCGCTTGTGCAGCTTCTCGAATGCTT
CTCATGCCCGACGACTCTGTGGCTGTAAATGGAAAGTCAACAGGGCAATG
GTTCTTGAACATTACGCTTTCCGCTTGTTCGCTGTTTCTAATCCTGTCTT
ATGAAGCCAGTATGACGTAAGTTGTCAAAGCCTTTTTACGATGTTCATAT
GTTAAAATCGCTAACTTTCCCCTTCTGAAATCGACTTGGCACGCTTACGC
AGTGCTTCACTCGTGCAGGAATCCGTCTCCTCCAGTTACAAGACACTGGA
TGACTTCAAAACATGCCGTATTGATCCAAGAAAAGTGTGTTTATTGCGAG
GAGGCGCCTTGGAGAATCATTGGAACAATTCTGTTACTCTAGAGTACGTC
ATTTAATTCATTAGCAGTCTGTTTTCAATATGGCTGACTTCTATTCGTCC
CTCTTGTAATGTGGAATATCAGCAATTGTCATACAGGAAAGAAATCGACG
TTTGCTTCATCATACGACGATCTATTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:3363210..3364438-

>Gvermi7714.t1 ID=Gvermi7714.t1|Name=Gvermi7714.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=291bp|location=Sequence derived from alignment at ScGOVlb_64:3363210..3364438- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGAGCCTCCGATAAGCTTCTTCAACCCTCAAGTCAACTTCAATGG
TGGTCTTGATGGTTATATCGCCGATACAACTTCTCGAATGCTTCTCATGC
CCGACGACTCTGTGGCTGTAAATGGAAAGTCAACAGGGCAATGTATGACT
GCTTCACTCGTGCAGGAATCCAAAAGTGTGTTTATTGCGAGGAGGCGCCT
TGGAGAATCATTGGAACAATTCTGTTACTCTAGACAATTGTCATACAGGA
AAGAAATCGACGTTTGCTTCATCATACGACGATCTATTTAA
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