Gvermi7634.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7634.t1
Unique NameGvermi7634.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:974778..975605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264198.Reut_A0030
Preferred namecah
PFAMsCarb_anhydrase,VPEP
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC02807
KEGG koko:K01674
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Evalue9.27e-36
EggNOG OGsCOG3338@1|root,COG3338@2|Bacteria,1PEA6@1224|Proteobacteria,2VI5K@28216|Betaproteobacteria,1K8C3@119060|Burkholderiaceae
EC4.2.1.1
DescriptionEukaryotic-type carbonic anhydrase
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7634Gvermi7634Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 974778..975605 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7634.t1.start1Gvermi7634.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 974778..974780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7634.t1.CDS1Gvermi7634.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 974778..975605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7634.t1.exon1Gvermi7634.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 974778..975605 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7634.t1.stop1Gvermi7634.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 975603..975605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7634.t1Gvermi7634.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 974778..975605 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7634.t1 ID=Gvermi7634.t1|Name=Gvermi7634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=276bp
MMRSLVAILALFAVVGASYIERDPSTAEVPEGESSTAYSYDPQAANGPPN
WASITPDFAICGSGTRQSPIDVPCTSNVAFTEKPIISTVTAILTVGQTTS
NFELNCVEAGSCGSIRFRGVDYNLINIHFHSDSENRVGGTAYPLEAHMVH
QADDGELLVVAILFSYGGSGDCLTAAPTDRGANGAFTTVLREAFRGGEQF
AFDTGAFLASDAIVAMWNGSLTTPPCSEGVTWLLAGAQQTVARGQVKLYR
RITDSGEFGNARPPQELNGRMVALA*
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spliced messenger RNA

>Gvermi7634.t1 ID=Gvermi7634.t1|Name=Gvermi7634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=828bp|location=Sequence derived from alignment at ScGOVlb_64:974778..975605+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGTTCTTTGGTTGCAATTTTGGCGCTGTTCGCCGTCGTCGGTGC
ATCGTACATCGAACGGGACCCGTCCACCGCGGAGGTGCCAGAGGGAGAAT
CGTCCACGGCATATTCCTACGACCCGCAAGCGGCGAACGGGCCCCCGAAT
TGGGCGTCGATCACCCCTGACTTTGCGATTTGCGGTAGCGGCACGCGGCA
GAGCCCCATCGACGTGCCGTGCACATCGAACGTCGCTTTCACTGAGAAGC
CGATAATCTCAACGGTGACCGCCATCTTGACTGTGGGACAGACGACCAGT
AACTTTGAACTGAACTGTGTGGAGGCGGGCAGCTGCGGCAGCATTCGCTT
CCGCGGCGTCGACTACAATCTGATCAACATCCACTTCCACTCGGACAGCG
AAAACCGCGTGGGCGGCACGGCGTATCCTCTAGAGGCGCACATGGTGCAC
CAGGCGGATGACGGCGAGCTGCTGGTGGTAGCCATCCTGTTCTCGTACGG
CGGGAGCGGCGACTGTTTGACGGCAGCGCCAACGGACCGCGGAGCAAACG
GCGCGTTTACGACGGTACTGCGGGAGGCGTTCCGCGGTGGCGAACAGTTC
GCTTTTGACACGGGCGCGTTCCTGGCGAGCGATGCGATCGTGGCGATGTG
GAACGGCTCTCTCACCACGCCGCCGTGCTCGGAGGGTGTGACGTGGCTGC
TGGCCGGTGCGCAGCAGACCGTGGCACGCGGGCAGGTGAAATTATACCGC
CGCATCACCGACTCGGGAGAATTTGGCAACGCGCGGCCGCCGCAAGAGCT
CAACGGGCGCATGGTCGCTCTAGCATAG
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protein sequence of Gvermi7634.t1

>Gvermi7634.t1 ID=Gvermi7634.t1|Name=Gvermi7634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=276bp
MMRSLVAILALFAVVGASYIERDPSTAEVPEGESSTAYSYDPQAANGPPN
WASITPDFAICGSGTRQSPIDVPCTSNVAFTEKPIISTVTAILTVGQTTS
NFELNCVEAGSCGSIRFRGVDYNLINIHFHSDSENRVGGTAYPLEAHMVH
QADDGELLVVAILFSYGGSGDCLTAAPTDRGANGAFTTVLREAFRGGEQF
AFDTGAFLASDAIVAMWNGSLTTPPCSEGVTWLLAGAQQTVARGQVKLYR
RITDSGEFGNARPPQELNGRMVALA*
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mRNA from alignment at ScGOVlb_64:974778..975605+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7634.t1 ID=Gvermi7634.t1|Name=Gvermi7634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=828bp|location=Sequence derived from alignment at ScGOVlb_64:974778..975605+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCGTTCTTTGGTTGCAATTTTGGCGCTGTTCGCCGTCGTCGGTGC
ATCGTACATCGAACGGGACCCGTCCACCGCGGAGGTGCCAGAGGGAGAAT
CGTCCACGGCATATTCCTACGACCCGCAAGCGGCGAACGGGCCCCCGAAT
TGGGCGTCGATCACCCCTGACTTTGCGATTTGCGGTAGCGGCACGCGGCA
GAGCCCCATCGACGTGCCGTGCACATCGAACGTCGCTTTCACTGAGAAGC
CGATAATCTCAACGGTGACCGCCATCTTGACTGTGGGACAGACGACCAGT
AACTTTGAACTGAACTGTGTGGAGGCGGGCAGCTGCGGCAGCATTCGCTT
CCGCGGCGTCGACTACAATCTGATCAACATCCACTTCCACTCGGACAGCG
AAAACCGCGTGGGCGGCACGGCGTATCCTCTAGAGGCGCACATGGTGCAC
CAGGCGGATGACGGCGAGCTGCTGGTGGTAGCCATCCTGTTCTCGTACGG
CGGGAGCGGCGACTGTTTGACGGCAGCGCCAACGGACCGCGGAGCAAACG
GCGCGTTTACGACGGTACTGCGGGAGGCGTTCCGCGGTGGCGAACAGTTC
GCTTTTGACACGGGCGCGTTCCTGGCGAGCGATGCGATCGTGGCGATGTG
GAACGGCTCTCTCACCACGCCGCCGTGCTCGGAGGGTGTGACGTGGCTGC
TGGCCGGTGCGCAGCAGACCGTGGCACGCGGGCAGGTGAAATTATACCGC
CGCATCACCGACTCGGGAGAATTTGGCAACGCGCGGCCGCCGCAAGAGCT
CAACGGGCGCATGGTCGCTCTAGCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:974778..975605+

>Gvermi7634.t1 ID=Gvermi7634.t1|Name=Gvermi7634.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=828bp|location=Sequence derived from alignment at ScGOVlb_64:974778..975605+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCGTTCTTTGGTTGCAATTTTGGCGCTGTTCGCCGTCGTCGGTGC
ATCGTACATCGAACGGGACCCGTCCACCGCGGAGGTGCCAGAGGGAGAAT
CGTCCACGGCATATTCCTACGACCCGCAAGCGGCGAACGGGCCCCCGAAT
TGGGCGTCGATCACCCCTGACTTTGCGATTTGCGGTAGCGGCACGCGGCA
GAGCCCCATCGACGTGCCGTGCACATCGAACGTCGCTTTCACTGAGAAGC
CGATAATCTCAACGGTGACCGCCATCTTGACTGTGGGACAGACGACCAGT
AACTTTGAACTGAACTGTGTGGAGGCGGGCAGCTGCGGCAGCATTCGCTT
CCGCGGCGTCGACTACAATCTGATCAACATCCACTTCCACTCGGACAGCG
AAAACCGCGTGGGCGGCACGGCGTATCCTCTAGAGGCGCACATGGTGCAC
CAGGCGGATGACGGCGAGCTGCTGGTGGTAGCCATCCTGTTCTCGTACGG
CGGGAGCGGCGACTGTTTGACGGCAGCGCCAACGGACCGCGGAGCAAACG
GCGCGTTTACGACGGTACTGCGGGAGGCGTTCCGCGGTGGCGAACAGTTC
GCTTTTGACACGGGCGCGTTCCTGGCGAGCGATGCGATCGTGGCGATGTG
GAACGGCTCTCTCACCACGCCGCCGTGCTCGGAGGGTGTGACGTGGCTGC
TGGCCGGTGCGCAGCAGACCGTGGCACGCGGGCAGGTGAAATTATACCGC
CGCATCACCGACTCGGGAGAATTTGGCAACGCGCGGCCGCCGCAAGAGCT
CAACGGGCGCATGGTCGCTCTAGCATAG
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