Gvermi7652.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7652.t1
Unique NameGvermi7652.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1319440..1319811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1205908.AKXW01000086_gene2085
Preferred nameVVA0408
PFAMsFAD_binding_6,Fer2,MOSC,MOSC_N,NAD_binding_1
Max annot lvl135623|Vibrionales
KEGG koko:K07140
Evalue8.75e-15
EggNOG OGsCOG3217@1|root,COG3217@2|Bacteria,1MXN2@1224|Proteobacteria,1RMN7@1236|Gammaproteobacteria,1XSP5@135623|Vibrionales
DescriptionFe-S protein
COG categoryC
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7652Gvermi7652Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1319440..1319811 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7652.t1.start1Gvermi7652.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1319440..1319442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7652.t1.CDS1Gvermi7652.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1319440..1319811 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7652.t1.exon1Gvermi7652.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1319440..1319811 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7652.t1.stop1Gvermi7652.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1319809..1319811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7652.t1Gvermi7652.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1319440..1319811 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7652.t1 ID=Gvermi7652.t1|Name=Gvermi7652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=124bp
LLLVSDTSREAVRKLAELPALAMERFRPNIVVDGDHLQPFDENQWAQLTV
GDAPFTVAKLCLRCQVPRVDPATGTPDSLPNKQPTAALQSLTNNHFGVNL
LPVSPAACIVRIGDRVRLSSKRV*
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spliced messenger RNA

>Gvermi7652.t1 ID=Gvermi7652.t1|Name=Gvermi7652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp|location=Sequence derived from alignment at ScGOVlb_64:1319440..1319811+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTGCTCGTCTCGGACACGTCCCGTGAAGCCGTGCGCAAGCTCGCCGA
GTTGCCCGCGCTGGCGATGGAGCGCTTTCGCCCGAATATCGTCGTGGACG
GCGACCACCTTCAGCCCTTCGACGAAAACCAGTGGGCGCAGCTCACCGTC
GGAGACGCGCCGTTCACGGTAGCCAAACTGTGCCTGCGCTGCCAGGTGCC
GAGAGTCGATCCCGCCACGGGCACGCCCGATTCGCTCCCGAACAAGCAGC
CCACGGCCGCCCTGCAATCCCTCACAAACAACCATTTCGGCGTCAATCTG
CTGCCCGTCTCGCCTGCCGCCTGCATCGTGCGCATTGGGGACCGCGTCCG
TTTGTCCTCGAAGCGCGTCTGA
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protein sequence of Gvermi7652.t1

>Gvermi7652.t1 ID=Gvermi7652.t1|Name=Gvermi7652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=124bp
LLLVSDTSREAVRKLAELPALAMERFRPNIVVDGDHLQPFDENQWAQLTV
GDAPFTVAKLCLRCQVPRVDPATGTPDSLPNKQPTAALQSLTNNHFGVNL
LPVSPAACIVRIGDRVRLSSKRV*
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mRNA from alignment at ScGOVlb_64:1319440..1319811+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7652.t1 ID=Gvermi7652.t1|Name=Gvermi7652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp|location=Sequence derived from alignment at ScGOVlb_64:1319440..1319811+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCTGCTCGTCTCGGACACGTCCCGTGAAGCCGTGCGCAAGCTCGCCGA
GTTGCCCGCGCTGGCGATGGAGCGCTTTCGCCCGAATATCGTCGTGGACG
GCGACCACCTTCAGCCCTTCGACGAAAACCAGTGGGCGCAGCTCACCGTC
GGAGACGCGCCGTTCACGGTAGCCAAACTGTGCCTGCGCTGCCAGGTGCC
GAGAGTCGATCCCGCCACGGGCACGCCCGATTCGCTCCCGAACAAGCAGC
CCACGGCCGCCCTGCAATCCCTCACAAACAACCATTTCGGCGTCAATCTG
CTGCCCGTCTCGCCTGCCGCCTGCATCGTGCGCATTGGGGACCGCGTCCG
TTTGTCCTCGAAGCGCGTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1319440..1319811+

>Gvermi7652.t1 ID=Gvermi7652.t1|Name=Gvermi7652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=372bp|location=Sequence derived from alignment at ScGOVlb_64:1319440..1319811+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCTGCTCGTCTCGGACACGTCCCGTGAAGCCGTGCGCAAGCTCGCCGA
GTTGCCCGCGCTGGCGATGGAGCGCTTTCGCCCGAATATCGTCGTGGACG
GCGACCACCTTCAGCCCTTCGACGAAAACCAGTGGGCGCAGCTCACCGTC
GGAGACGCGCCGTTCACGGTAGCCAAACTGTGCCTGCGCTGCCAGGTGCC
GAGAGTCGATCCCGCCACGGGCACGCCCGATTCGCTCCCGAACAAGCAGC
CCACGGCCGCCCTGCAATCCCTCACAAACAACCATTTCGGCGTCAATCTG
CTGCCCGTCTCGCCTGCCGCCTGCATCGTGCGCATTGGGGACCGCGTCCG
TTTGTCCTCGAAGCGCGTCTGA
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