Gvermi7710.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7710.t1
Unique Name	Gvermi7710.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	306

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:3063194..3064111 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	39444.A0A097IW19_9POXV
Max annot lvl	10239\|Viruses
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016032,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019058,GO:0019068,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0051704,GO:0071704,GO:0140096,GO:1901564
Evalue	3.4e-12
EggNOG OGs	4QAKR@10239\|Viruses,4QUUC@35237\|dsDNA viruses no RNA stage
Description	protein serine/threonine kinase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7710	Gvermi7710	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 3063194..3064111 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7710.t1.stop1	Gvermi7710.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 3063194..3063196 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7710.t1.CDS1	Gvermi7710.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 3063194..3064111 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7710.t1.exon1	Gvermi7710.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 3063194..3064111 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7710.t1.start1	Gvermi7710.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 3064109..3064111 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7710.t1	Gvermi7710.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 3063194..3064111 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:3063194..3064111-
coding sequence from alignment at ScGOVlb_64:3063194..3064111-

mRNA sequence

>Gvermi7710.t1 ID=Gvermi7710.t1|Name=Gvermi7710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=306bp
MSWSVVKFENEVVNNRWVVGDELDSGANGVVYAVVDCTGRQKSSLIKFAV
PLDDHPCIVAEAGHSLTCEFITLRLLNNKNPRLNVPTVHDYGFHKGVQYV
VMSNLGRNVTGLWSDANYNFSNETVLQITYDVICILQNLHDYGVSHGNIT
TSNIVSVNNYQKQRELYLIDFGSSTPITSETRMRDVAKCIELMVRLLSNN
KKCLIPGLAFLPKDWISSVNCMREAYRNIDETFEIRERQGAPLPEDVRIL
VQEFFHSSVPNYNQMKSHLRRALDALLSKAGRIQRAINIFLLNRNLYYMR
LLFVS*

spliced messenger RNA

>Gvermi7710.t1 ID=Gvermi7710.t1|Name=Gvermi7710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=918bp|location=Sequence derived from alignment at ScGOVlb_64:3063194..3064111- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTGGTCTGTCGTCAAATTTGAGAATGAAGTCGTTAACAACAGATG
GGTCGTTGGAGACGAATTAGATTCGGGCGCAAATGGGGTCGTGTATGCGG
TTGTTGATTGCACGGGCAGACAAAAGTCCTCCTTGATCAAGTTTGCTGTC
CCTCTTGACGACCATCCGTGTATTGTGGCAGAGGCTGGGCACTCTTTAAC
TTGTGAGTTTATTACGCTTCGATTGCTTAACAACAAAAATCCTCGGCTGA
ATGTCCCAACAGTTCATGATTATGGTTTTCATAAAGGAGTGCAGTACGTG
GTCATGTCAAATCTTGGCAGGAATGTGACTGGTTTATGGAGTGACGCAAA
CTACAACTTTTCCAACGAGACTGTTCTGCAAATCACATATGATGTAATAT
GCATATTGCAAAATTTGCACGACTATGGAGTCTCTCATGGGAATATCACA
ACCTCAAACATCGTAAGTGTCAATAATTATCAGAAACAGAGAGAACTGTA
TCTGATTGACTTCGGTTCATCAACTCCAATAACATCAGAGACTAGAATGA
GGGACGTAGCAAAATGCATTGAACTTATGGTCAGACTGCTTTCGAATAAT
AAGAAGTGTCTTATCCCGGGATTAGCCTTTTTGCCAAAAGATTGGATCTC
TTCAGTCAACTGTATGCGAGAGGCCTATCGAAACATCGATGAAACGTTCG
AGATTCGCGAGAGACAAGGAGCGCCTTTGCCTGAGGATGTACGTATTCTA
GTACAGGAATTCTTCCATAGTAGTGTTCCGAATTATAATCAGATGAAGTC
CCATTTACGACGGGCTCTTGATGCTCTATTAAGCAAAGCAGGACGCATTC
AACGGGCAATCAATATTTTCCTTCTGAACCGCAACCTGTATTATATGCGT
CTCTTGTTTGTTTCTTAA

protein sequence of Gvermi7710.t1

>Gvermi7710.t1 ID=Gvermi7710.t1|Name=Gvermi7710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=306bp
MSWSVVKFENEVVNNRWVVGDELDSGANGVVYAVVDCTGRQKSSLIKFAV
PLDDHPCIVAEAGHSLTCEFITLRLLNNKNPRLNVPTVHDYGFHKGVQYV
VMSNLGRNVTGLWSDANYNFSNETVLQITYDVICILQNLHDYGVSHGNIT
TSNIVSVNNYQKQRELYLIDFGSSTPITSETRMRDVAKCIELMVRLLSNN
KKCLIPGLAFLPKDWISSVNCMREAYRNIDETFEIRERQGAPLPEDVRIL
VQEFFHSSVPNYNQMKSHLRRALDALLSKAGRIQRAINIFLLNRNLYYMR
LLFVS*

mRNA from alignment at ScGOVlb_64:3063194..3064111-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7710.t1 ID=Gvermi7710.t1|Name=Gvermi7710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=918bp|location=Sequence derived from alignment at ScGOVlb_64:3063194..3064111- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTTGGTCTGTCGTCAAATTTGAGAATGAAGTCGTTAACAACAGATG
GGTCGTTGGAGACGAATTAGATTCGGGCGCAAATGGGGTCGTGTATGCGG
TTGTTGATTGCACGGGCAGACAAAAGTCCTCCTTGATCAAGTTTGCTGTC
CCTCTTGACGACCATCCGTGTATTGTGGCAGAGGCTGGGCACTCTTTAAC
TTGTGAGTTTATTACGCTTCGATTGCTTAACAACAAAAATCCTCGGCTGA
ATGTCCCAACAGTTCATGATTATGGTTTTCATAAAGGAGTGCAGTACGTG
GTCATGTCAAATCTTGGCAGGAATGTGACTGGTTTATGGAGTGACGCAAA
CTACAACTTTTCCAACGAGACTGTTCTGCAAATCACATATGATGTAATAT
GCATATTGCAAAATTTGCACGACTATGGAGTCTCTCATGGGAATATCACA
ACCTCAAACATCGTAAGTGTCAATAATTATCAGAAACAGAGAGAACTGTA
TCTGATTGACTTCGGTTCATCAACTCCAATAACATCAGAGACTAGAATGA
GGGACGTAGCAAAATGCATTGAACTTATGGTCAGACTGCTTTCGAATAAT
AAGAAGTGTCTTATCCCGGGATTAGCCTTTTTGCCAAAAGATTGGATCTC
TTCAGTCAACTGTATGCGAGAGGCCTATCGAAACATCGATGAAACGTTCG
AGATTCGCGAGAGACAAGGAGCGCCTTTGCCTGAGGATGTACGTATTCTA
GTACAGGAATTCTTCCATAGTAGTGTTCCGAATTATAATCAGATGAAGTC
CCATTTACGACGGGCTCTTGATGCTCTATTAAGCAAAGCAGGACGCATTC
AACGGGCAATCAATATTTTCCTTCTGAACCGCAACCTGTATTATATGCGT
CTCTTGTTTGTTTCTTAA

Coding sequence (CDS) from alignment at ScGOVlb_64:3063194..3064111-

>Gvermi7710.t1 ID=Gvermi7710.t1|Name=Gvermi7710.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=918bp|location=Sequence derived from alignment at ScGOVlb_64:3063194..3064111- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTTGGTCTGTCGTCAAATTTGAGAATGAAGTCGTTAACAACAGATG
GGTCGTTGGAGACGAATTAGATTCGGGCGCAAATGGGGTCGTGTATGCGG
TTGTTGATTGCACGGGCAGACAAAAGTCCTCCTTGATCAAGTTTGCTGTC
CCTCTTGACGACCATCCGTGTATTGTGGCAGAGGCTGGGCACTCTTTAAC
TTGTGAGTTTATTACGCTTCGATTGCTTAACAACAAAAATCCTCGGCTGA
ATGTCCCAACAGTTCATGATTATGGTTTTCATAAAGGAGTGCAGTACGTG
GTCATGTCAAATCTTGGCAGGAATGTGACTGGTTTATGGAGTGACGCAAA
CTACAACTTTTCCAACGAGACTGTTCTGCAAATCACATATGATGTAATAT
GCATATTGCAAAATTTGCACGACTATGGAGTCTCTCATGGGAATATCACA
ACCTCAAACATCGTAAGTGTCAATAATTATCAGAAACAGAGAGAACTGTA
TCTGATTGACTTCGGTTCATCAACTCCAATAACATCAGAGACTAGAATGA
GGGACGTAGCAAAATGCATTGAACTTATGGTCAGACTGCTTTCGAATAAT
AAGAAGTGTCTTATCCCGGGATTAGCCTTTTTGCCAAAAGATTGGATCTC
TTCAGTCAACTGTATGCGAGAGGCCTATCGAAACATCGATGAAACGTTCG
AGATTCGCGAGAGACAAGGAGCGCCTTTGCCTGAGGATGTACGTATTCTA
GTACAGGAATTCTTCCATAGTAGTGTTCCGAATTATAATCAGATGAAGTC
CCATTTACGACGGGCTCTTGATGCTCTATTAAGCAAAGCAGGACGCATTC
AACGGGCAATCAATATTTTCCTTCTGAACCGCAACCTGTATTATATGCGT
CTCTTGTTTGTTTCTTAA