Gvermi7610.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7610.t1
Unique NameGvermi7610.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:284314..285303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7610Gvermi7610Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 284314..285303 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7610.t1.start1Gvermi7610.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 284314..284316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7610.t1.CDS1Gvermi7610.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 284314..285303 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7610.t1.exon1Gvermi7610.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 284314..285303 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7610.t1.stop1Gvermi7610.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 285301..285303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7610.t1Gvermi7610.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 284314..285303 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7610.t1 ID=Gvermi7610.t1|Name=Gvermi7610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=330bp
MMVTFAEVDSKVKVICRGAGHLKYLAREALVQERLSQPETSGKLFFVLHE
SDSGNENMFKAILQIIDRDSPAEIVKREVDLLSNIHTCQREVEETVSSFD
AKIQYAVAMYTYHTLKMNETYIRQFVILMLRNEKLIPDTMNALIFRLNDK
DRFVIDTRTMPLMFSSKELKNLNKVIFEKEDAKYIREKIMELQKKLEDER
KTSVFVIIIKRAVSLLVNVRASTNETTKSHEQLIIPKTMLGKQRDFKTPK
RHEYITNMKEETPCKARRGTGHWLKEGDICRAILRITKKTRIFLMEQEGK
LVSTKSPESKERKTVVESRLTIFKSLFLQ*
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spliced messenger RNA

>Gvermi7610.t1 ID=Gvermi7610.t1|Name=Gvermi7610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_64:284314..285303+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGTCACGTTTGCAGAAGTGGACTCTAAGGTAAAAGTAATATGTCG
TGGTGCAGGTCATTTGAAATATTTGGCTCGTGAGGCACTGGTACAAGAGA
GGCTCAGTCAACCAGAAACATCAGGCAAACTCTTCTTTGTCTTACACGAA
TCAGACTCCGGAAATGAAAACATGTTTAAAGCTATCCTTCAGATAATCGA
TCGAGATAGTCCAGCCGAGATCGTGAAACGAGAAGTTGATTTGCTCTCCA
ACATACACACCTGTCAGCGTGAGGTTGAAGAAACTGTATCTTCTTTTGAC
GCAAAGATTCAGTATGCTGTGGCGATGTACACATATCATACACTGAAAAT
GAATGAGACCTACATAagacagttcgttatactgatgcttcgcaatgaaa
aactgatcccagatactatgaacgcCTTGATCTTCCGGTTAAATGACAAA
GACAGGTTTGTAATAGATACTAGAACAATGCCCCTCATGTTCTCAAGCAA
GGAGTTGAAAAACCTAAACAAGGTTATCTTTGAAAAAGAGGATGCAAAAT
ACATACGGGAGAAGATCATGGAGCTTCAAAAGAAACTTGAAGACGAGAGA
AAGACTAGCGTTTTCGTGATTATCATAAAGCGTGCGGTTTCCTTACTTGT
TAATGTCCGAGCTTCTACCAATGAAACGACGAAGAGCCACGAGCAGCTAA
TAATTCCAAAGACAATGCTAGGCAAGCAAAGAGATTTTAAGACACCCAAA
CGCCATGAATACATTACAAATATGAAAGAAGAGACCCCTTGTAAAGCCCG
TAGAGGAACGGGACACTGGTTGAAAGAAGGTGACATATGCCGAGCGATAC
TGAGGATCACAAAGAAAACTCGTATTTTTTTAATGGAACAAGAGGGCAAA
CTCGTGAGCACAAAATCACCAGAGAGTAAAGAACGAAAGACAGTGGTAGA
GTCGAGGTTGACCATTTTTaaatcgctttttcttcagtga
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protein sequence of Gvermi7610.t1

>Gvermi7610.t1 ID=Gvermi7610.t1|Name=Gvermi7610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=330bp
MMVTFAEVDSKVKVICRGAGHLKYLAREALVQERLSQPETSGKLFFVLHE
SDSGNENMFKAILQIIDRDSPAEIVKREVDLLSNIHTCQREVEETVSSFD
AKIQYAVAMYTYHTLKMNETYIRQFVILMLRNEKLIPDTMNALIFRLNDK
DRFVIDTRTMPLMFSSKELKNLNKVIFEKEDAKYIREKIMELQKKLEDER
KTSVFVIIIKRAVSLLVNVRASTNETTKSHEQLIIPKTMLGKQRDFKTPK
RHEYITNMKEETPCKARRGTGHWLKEGDICRAILRITKKTRIFLMEQEGK
LVSTKSPESKERKTVVESRLTIFKSLFLQ*
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mRNA from alignment at ScGOVlb_64:284314..285303+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7610.t1 ID=Gvermi7610.t1|Name=Gvermi7610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_64:284314..285303+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGTCACGTTTGCAGAAGTGGACTCTAAGGTAAAAGTAATATGTCG
TGGTGCAGGTCATTTGAAATATTTGGCTCGTGAGGCACTGGTACAAGAGA
GGCTCAGTCAACCAGAAACATCAGGCAAACTCTTCTTTGTCTTACACGAA
TCAGACTCCGGAAATGAAAACATGTTTAAAGCTATCCTTCAGATAATCGA
TCGAGATAGTCCAGCCGAGATCGTGAAACGAGAAGTTGATTTGCTCTCCA
ACATACACACCTGTCAGCGTGAGGTTGAAGAAACTGTATCTTCTTTTGAC
GCAAAGATTCAGTATGCTGTGGCGATGTACACATATCATACACTGAAAAT
GAATGAGACCTACATAagacagttcgttatactgatgcttcgcaatgaaa
aactgatcccagatactatgaacgcCTTGATCTTCCGGTTAAATGACAAA
GACAGGTTTGTAATAGATACTAGAACAATGCCCCTCATGTTCTCAAGCAA
GGAGTTGAAAAACCTAAACAAGGTTATCTTTGAAAAAGAGGATGCAAAAT
ACATACGGGAGAAGATCATGGAGCTTCAAAAGAAACTTGAAGACGAGAGA
AAGACTAGCGTTTTCGTGATTATCATAAAGCGTGCGGTTTCCTTACTTGT
TAATGTCCGAGCTTCTACCAATGAAACGACGAAGAGCCACGAGCAGCTAA
TAATTCCAAAGACAATGCTAGGCAAGCAAAGAGATTTTAAGACACCCAAA
CGCCATGAATACATTACAAATATGAAAGAAGAGACCCCTTGTAAAGCCCG
TAGAGGAACGGGACACTGGTTGAAAGAAGGTGACATATGCCGAGCGATAC
TGAGGATCACAAAGAAAACTCGTATTTTTTTAATGGAACAAGAGGGCAAA
CTCGTGAGCACAAAATCACCAGAGAGTAAAGAACGAAAGACAGTGGTAGA
GTCGAGGTTGACCATTTTTaaatcgctttttcttcagtga
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Coding sequence (CDS) from alignment at ScGOVlb_64:284314..285303+

>Gvermi7610.t1 ID=Gvermi7610.t1|Name=Gvermi7610.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=990bp|location=Sequence derived from alignment at ScGOVlb_64:284314..285303+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGTCACGTTTGCAGAAGTGGACTCTAAGGTAAAAGTAATATGTCG
TGGTGCAGGTCATTTGAAATATTTGGCTCGTGAGGCACTGGTACAAGAGA
GGCTCAGTCAACCAGAAACATCAGGCAAACTCTTCTTTGTCTTACACGAA
TCAGACTCCGGAAATGAAAACATGTTTAAAGCTATCCTTCAGATAATCGA
TCGAGATAGTCCAGCCGAGATCGTGAAACGAGAAGTTGATTTGCTCTCCA
ACATACACACCTGTCAGCGTGAGGTTGAAGAAACTGTATCTTCTTTTGAC
GCAAAGATTCAGTATGCTGTGGCGATGTACACATATCATACACTGAAAAT
GAATGAGACCTACATAagacagttcgttatactgatgcttcgcaatgaaa
aactgatcccagatactatgaacgcCTTGATCTTCCGGTTAAATGACAAA
GACAGGTTTGTAATAGATACTAGAACAATGCCCCTCATGTTCTCAAGCAA
GGAGTTGAAAAACCTAAACAAGGTTATCTTTGAAAAAGAGGATGCAAAAT
ACATACGGGAGAAGATCATGGAGCTTCAAAAGAAACTTGAAGACGAGAGA
AAGACTAGCGTTTTCGTGATTATCATAAAGCGTGCGGTTTCCTTACTTGT
TAATGTCCGAGCTTCTACCAATGAAACGACGAAGAGCCACGAGCAGCTAA
TAATTCCAAAGACAATGCTAGGCAAGCAAAGAGATTTTAAGACACCCAAA
CGCCATGAATACATTACAAATATGAAAGAAGAGACCCCTTGTAAAGCCCG
TAGAGGAACGGGACACTGGTTGAAAGAAGGTGACATATGCCGAGCGATAC
TGAGGATCACAAAGAAAACTCGTATTTTTTTAATGGAACAAGAGGGCAAA
CTCGTGAGCACAAAATCACCAGAGAGTAAAGAACGAAAGACAGTGGTAGA
GTCGAGGTTGACCATTTTTaaatcgctttttcttcagtga
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