Gvermi7706.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7706.t1
Unique NameGvermi7706.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2821423..2821890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7706Gvermi7706Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2821423..2821890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7706.t1Gvermi7706.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2821423..2821890 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7706.t1.stop1Gvermi7706.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2821423..2821425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7706.t1.CDS1Gvermi7706.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2821423..2821680 -
Gvermi7706.t1.CDS2Gvermi7706.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2821756..2821890 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7706.t1.exon1Gvermi7706.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2821423..2821680 -
Gvermi7706.t1.exon2Gvermi7706.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2821756..2821890 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7706.t1.intron1Gvermi7706.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 2821681..2821755 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7706.t1.start1Gvermi7706.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2821888..2821890 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7706.t1 ID=Gvermi7706.t1|Name=Gvermi7706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=131bp
MSSSHLRAALGLGLGLADIDAEVEGLGNRETLALGEAEDDAEGVGGKVSK
DREALGDGMASKEDEGFKLDDWEGVGVEEGLLDGETVGDGDIVKAADGVR
NMEDVGVLIVTTAFVWEGEADGDGARISEF*
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spliced messenger RNA

>Gvermi7706.t1 ID=Gvermi7706.t1|Name=Gvermi7706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=393bp|location=Sequence derived from alignment at ScGOVlb_64:2821423..2821890- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGCTCACATCTCAGAGCCGCGCTTGGGCTCGGGCTCGGGCTTGC
AGATATTGATGCGGAAGTAGAAGGGCTGGGTAATAGAGAAACACTGGCAC
TTGGAGAAGCAGAAGACGACGCTGAAGGGGTTGGTGGCAAAGTATCTAAA
GACAGAGAGGCACTGGGTGACGGAATGGCATCGAAAGAAGATGAAGGATT
CAAACTTGATGATTGGGAAGGGGTAGGCGTTGAGGAGGGACTTTTAGATG
GTGAGACGGTTGGGGATGGTGATATTGTGAAAGCTGCTGATGGTGTGCGA
AATATGGAGGATGTAGGAGTATTAATCGTTACTACAGCATTTGTATGGGA
AGGAGAAGCAGACGGAGACGGCGCGAGAATTTCTGAGTTCTGA
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protein sequence of Gvermi7706.t1

>Gvermi7706.t1 ID=Gvermi7706.t1|Name=Gvermi7706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=131bp
MSSSHLRAALGLGLGLADIDAEVEGLGNRETLALGEAEDDAEGVGGKVSK
DREALGDGMASKEDEGFKLDDWEGVGVEEGLLDGETVGDGDIVKAADGVR
NMEDVGVLIVTTAFVWEGEADGDGARISEF*
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mRNA from alignment at ScGOVlb_64:2821423..2821890-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7706.t1 ID=Gvermi7706.t1|Name=Gvermi7706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=468bp|location=Sequence derived from alignment at ScGOVlb_64:2821423..2821890- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAGCTCACATCTCAGAGCCGCGCTTGGGCTCGGGCTCGGGCTTGC
AGATATTGATGCGGAAGTAGAAGGGCTGGGTAATAGAGAAACACTGGCAC
TTGGAGAAGCAGAAGACGACGCTGAAGGGGTTGGTGTAAGTGTTGCAACT
GGGGTTTGTGTAGCACCCGGGGTAGGCGAAGCACTTGATGAGTGAGAAGT
TTGGGGCGAGGGCAAAGTATCTAAAGACAGAGAGGCACTGGGTGACGGAA
TGGCATCGAAAGAAGATGAAGGATTCAAACTTGATGATTGGGAAGGGGTA
GGCGTTGAGGAGGGACTTTTAGATGGTGAGACGGTTGGGGATGGTGATAT
TGTGAAAGCTGCTGATGGTGTGCGAAATATGGAGGATGTAGGAGTATTAA
TCGTTACTACAGCATTTGTATGGGAAGGAGAAGCAGACGGAGACGGCGCG
AGAATTTCTGAGTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:2821423..2821890-

>Gvermi7706.t1 ID=Gvermi7706.t1|Name=Gvermi7706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=393bp|location=Sequence derived from alignment at ScGOVlb_64:2821423..2821890- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAGCTCACATCTCAGAGCCGCGCTTGGGCTCGGGCTCGGGCTTGC
AGATATTGATGCGGAAGTAGAAGGGCTGGGTAATAGAGAAACACTGGCAC
TTGGAGAAGCAGAAGACGACGCTGAAGGGGTTGGTGGCAAAGTATCTAAA
GACAGAGAGGCACTGGGTGACGGAATGGCATCGAAAGAAGATGAAGGATT
CAAACTTGATGATTGGGAAGGGGTAGGCGTTGAGGAGGGACTTTTAGATG
GTGAGACGGTTGGGGATGGTGATATTGTGAAAGCTGCTGATGGTGTGCGA
AATATGGAGGATGTAGGAGTATTAATCGTTACTACAGCATTTGTATGGGA
AGGAGAAGCAGACGGAGACGGCGCGAGAATTTCTGAGTTCTGA
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