Gvermi7650.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7650.t1
Unique NameGvermi7650.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1298832..1305636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7650Gvermi7650Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1298832..1305636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7650.t1Gvermi7650.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1298832..1305636 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7650.t1.stop1Gvermi7650.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1298832..1298834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7650.t1.CDS1Gvermi7650.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1298832..1299059 -
Gvermi7650.t1.CDS2Gvermi7650.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1305353..1305397 -
Gvermi7650.t1.CDS3Gvermi7650.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1305514..1305636 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7650.t1.exon1Gvermi7650.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1298832..1299059 -
Gvermi7650.t1.exon2Gvermi7650.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1305353..1305397 -
Gvermi7650.t1.exon3Gvermi7650.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1305514..1305636 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7650.t1.intron1Gvermi7650.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1299060..1305352 -
Gvermi7650.t1.intron2Gvermi7650.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1305398..1305513 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7650.t1.start1Gvermi7650.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1305634..1305636 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7650.t1 ID=Gvermi7650.t1|Name=Gvermi7650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=132bp
MCSLTIVSKNGTQVLKCVADVENVYSLRVSLSRELVWDAAKKSWTWYKTW
KVPDCLSFKGSYFSLRLTSRSRDLTVTYAVVRQHSPLNQLSAQPLDGNRN
STLWRVSLNSMLTLPSERLSFLTYLDKKPRL*
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spliced messenger RNA

>Gvermi7650.t1 ID=Gvermi7650.t1|Name=Gvermi7650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp|location=Sequence derived from alignment at ScGOVlb_64:1298832..1305636- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTAGTCTCACCATTGTGTCCAAGAACGGCACCCAGGTCTTGAAATG
CGTCGCTGACGTTGAAAATGTTTACAGCCTCCGGGTCAGTCTAAGTCGTG
AGCTAGTATGGGATGCTGCAAAGAAATCATGGACATGGTACAAGACCTGG
AAAGTTCCGGATTGCTTGTCGTTCAAGGGGTCCTACTTCTCCCTGCGCCT
CACCAGCCGATCGCGCGACTTGACGGTGACGTACGCGGTCGTCAGGCAGC
ACAGCCCTCTGAACCAGTTGTCGGCGCAGCCCTTGGACGGGAACAGAAAC
TCGACGCTCTGGCGCGTGTCGCTGAACTCCATGCTCACCTTGCCGTCTGA
GCGTTTGAGCTTTCTCACGTATTTGGACAAGAAGCCAAGACTCTGA
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protein sequence of Gvermi7650.t1

>Gvermi7650.t1 ID=Gvermi7650.t1|Name=Gvermi7650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=132bp
MCSLTIVSKNGTQVLKCVADVENVYSLRVSLSRELVWDAAKKSWTWYKTW
KVPDCLSFKGSYFSLRLTSRSRDLTVTYAVVRQHSPLNQLSAQPLDGNRN
STLWRVSLNSMLTLPSERLSFLTYLDKKPRL*
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mRNA from alignment at ScGOVlb_64:1298832..1305636-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7650.t1 ID=Gvermi7650.t1|Name=Gvermi7650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=6805bp|location=Sequence derived from alignment at ScGOVlb_64:1298832..1305636- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTAGTCTCACCATTGTGTCCAAGAACGGCACCCAGGTCTTGAAATG
CGTCGCTGACGTTGAAAATGTTTACAGCCTCCGGGTCAGTCTAAGTCGTG
AGCTAGTATGGGATGCTGCAAAGGTACGACCGAATACTGCCGCACGATGC
TCGTTTTTTCGCCCTCTTGGAAACAACGCACGCACACGTGCTAACGCTCT
CGTTCGTATTCATCTTTATTTCGACCCCTTCCAAAACAGAAATCATGGAC
ATGGTACAAGACCTGGAAAGTTCCGGATTGCTTGGTCACAGCTGATACCG
TTGCCCTTCACGGAATCAGTGACCTAGAGGCTCACCTTTCTGTGGTCTGC
CAAGGCGAAAAGCCACATCAAATTCAAGATGCGGGCGTACAGGCTCTGGA
TCGCTCTCAGTCTTACGCATCTCAGCAACTCGTAGACTGCCGTTGCCGGA
TTTTAACGTCTGCGTCTCGTGGGAACCAACGGCACATTTGACGGACGTCT
TTTTCATTTTGTTATTAGCATCGTGCGCAGAGAGAAAGAGAACATTACGG
CAATCGCGAGTGTCATATCAACAGCCTTTGCTGTCTACTACCGCAAGAAC
GCCGCCAAGAAGCGTAAAATCGTCGATCGCGAAGCCATGGTGTTAAGACG
CTGGTCTGAAGGGTACATCTTCTGTCCGTTTGACCCTAAAGAACTTGACA
GGAAGTTCATTAGGAAGGCTGTCAACTCCGAGGGTGTCATGGTCGAGGAA
GAAATCACCAACTCGTGGGAAGGATTATTAGCCTACTTTCAAGCTCCAAA
TATTCGCTTCAAGATTCGGCATCCTCTTTTTCTTTCTATACGATTCAATA
ATGTCTTGATGATTCTGCGCGACTCGTTACGCTTTCCGCAAGAAAACGAA
GAAGCACTACGGTCATTCATCCGTAGCTGTGGCTTTCCGCTCAATTGGAA
ACGAGACCCTGCTGTCAAAATTGGCCATGGCGGATTCTTACCTCCATGGC
TCATCGCCTTTAAAAACTCAGCAATGAAGAGTTGCAGTCCTGAGTTTATG
AGCAAATTGTCTGATCTGATGGAGGTAGTCAAAGGTCCTACTCTCGGCTT
CGTTCCTGATGCCTTATTGCTATCACAACGTTACTATCCTACCTTTGATG
TGGCAAGACTTGGACAATTGTATGCCAACATTTATGCAATTGAGTTTGCT
TCGAGCTTGGGAGGAGAATCCAGCAAAAGCATCCAAAGTATTAACGCTGC
AAAGAAATCTAAACTTACGTTATATCCCATGAAGTCAGATGCAATGCTCG
GAGAGTACCCATGTGGGACTCTGATGCACCCTCCGGAGTCCCGCAGGGTC
AAATCAACAGTGTCGTACGCGGAAAAGAGTTCAAGCCCATTACGAGGACC
ATCGCAACAAATGCGTACATCATTTGAAAACTACTTCATTTCACGGCATG
GAGAACTTCGGATGTTGTTACAAAATTTTGCTGCACTCGTATCACAATGC
GTGACAGATCCACAAAGAGTAGATGAGGAGACGTTGAAAAAGGCATATGA
AGATTTCACAAAATCTCTTTCACTTCATGCATATGTTGAGGAACACGTGC
TGTTCAAAAAGCTTTCCGAACGCATCCCAAAGGTCACAGAATCATATTCC
GTGGATCACTGGCTGCAAATACGGAAAATGGATGAGATTTCGCACATTAT
GCGAAATATACAACCTCTAAAGATTGCAGATCTTTTCATGGAAGTATCTG
AATTTTCCGCAGTTCACAAAGCCCATTTGGATAAGGAAGAAATTCACCTT
CTTCCATACTTTCTGGAATATTTTAGTGACGAAGAAATAATTGATTTGAT
CAGAAAATCCCAGGAGACGCTTCATCAATAGGTTACAAACCATAGAAAGC
AAAGCCAGAAGAGAAAAGGTTTAATGGATCCAACACATCGAAGAGCCATC
GAAACAGCAACTGAAGTTGCTAGAATTCCTGTTCAACAGAGTGAATCGGT
AGACTAACCCAAACAGATCAATGATCGCTGCTTCAACGAAGATGCTGATG
CAGTTTTAGATCTAATGGATGAGATGTACCTGTGATATAGTTCTCAGTGT
TGAGATTGAAGGTCGTTCTCGTGTTTTTTAATTAGATATATATATTTTGA
AGCCGCAAAAACGATCTTATAAAGTGTATTGATGTTCCAGAAAGATTCGG
AGGCTACCAGCCAATTCGCCAAACTCTTGTACTCATTCTAGTTTTCTTGT
TTGTCACAAAATTTCAAAGGTGTGAAAGCATTCCGTTTCTTCATCTTTTA
AAGAAAACTGTTGCCCAATCATCGACGATGGGATCTCGTTGGGAGTTCTC
ACCAAGTTTTATTAGACTCGTATTGTAACGCACCATGAACATCGAGGAAA
TAAATCGCTGAGAACAGTTATAAAGGTTGCATACCTTGTCTGGTCTAGGT
AAGCTTACGTGAGACTGAAACACGACTTCCGTAGATCTATTCAGTCCGAA
ACACTCATCGCCATCTATACCGCTCCGCTATAGTGAAGACGATACTTTGT
CAACAAAATGTGATAGCTAATCTTAATCAATCTCATTCCTCCATCGCAGT
CCTTCACTGTTGCTCCAGAACATGTGAACCCATCTTTCATCCAGACTAAA
TTGTCCCCACCCTCTCCCCTCGTGCACGGTCCGAAATTACTTCACGATTG
CTGTCAAACGTATTGCGTATATCAAAATGTGAGGAGTTTTATCAAGCACA
TGCGGCTTCCGAGTTTTGCAGGACCAAACAGGGGGTTCAAGGCGTGGCGC
TTCTCAATAAATGTACCGTGGACATGTTGAAGTTAGCTTAGAGTTGTTTC
GCGCTTCTCTTAACTATTATTATATTGGTTTTGGGAACTGCGCGGCCTTG
CATAAAGCTTTCTGTCGCAATGATTTAGTAAACGCTTGAACACGTTTCGA
TACTTTCTTTCTGTTGTAGATCTAACGTGAATCATTTAATCTAAAACAAG
TGGTTGTAGCCACACTAACTCGGATCCCCTTTTATACTTTGCCTTGCGCA
ATCTTCCGATTATTCTTTTGTACTGTTTCAATAATGCGATAAAGTGTTAT
AGAGCAGAACTGAATGTGTATCACGATGCATAGAATGGATCTACATTGTT
CTTGATAACTGCTCCCGTCCTGACTTTTAAACTATCTAAAACATATCAAT
GCCTCACTTTTTGTTGTGAGTTGGCGTTCAGGTCCATGTCGTCGGAAACC
GGCTTCTTGCGCGAGCCAGAACGCACAAAACACGCCCCTCATGCTGACAC
AAGCCGTAGCTTGGCGACACTACTCCGTACCATCTCCACTACGCGTCGTC
TTCCTTACGCGCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTCCGGCAGCATGAGCATGCCGGATCTGAAGCGA
GAGTCGTTTGTTCAGCCATATGACGAGAGATTTTAATCCCAGATCATGAG
GGTTACAGGCAAGAGGAAGGGACAGACAGCTGAGGTACAAAGAAGAGAAG
GACCAAAATGGGAAGTAACGGAAAGTGGTAGAGAAGATGAAACGAAAGAG
ATGAGCAGATGGGTGGGGACGGGGTTGGATTCAGAGCGTATAGAGAGGAG
GGTTGGGCAGCAGGGAAGATAATAAGGGCAATACGGTGGAAGCCAGTGGA
CTGATGTATTCGGTATTTGGGCGAATGAACCGAGGAGTTGGTGGAACAGA
ACCGTTTCGCGGACGACGGCCGGCGGTTCCACTGCGGTGGCACGGAATTT
GTATTTTTATCTACGCTGGCTGTGCTGAAACAAATGTCTATGTGTTGCGG
CGTGTAGGACGCATTGCAGCAGCGATTTCTGTGAGCCGTAATGGACATTG
TATGTGAAGTAGAAATGCATGGAATATTAAGGTTGAGCGAGAGTGCGCCG
CGTGCTTCGATAGACGGAGCATGCGGTTGTCGATGAATGAGAGTATGAGG
GGTCCTTAAGAGTGGGTGGAGAGGGAAGGCAGGAAGCCGGGGTTTGCCGC
GACAAAGTTTTAAGTAAAGCTGGATATAGGACAGATACGTCAGCAAGAGG
CCGGGAGACGGCGGATTTTAGAGCGCATGAAACGGAGGTGTTGGGCGAAA
AGCTCTGTGATGACGAACGACTATAAATGCATTAATTATTGCTGAAGGAA
GGCAGTGTCGGTGCATTTTCAGCCGACTGTTGTTGAGAAAGATGTGGTTC
GGTTTAGGTACTGGATCCTTTCTTTCCAGAATTGTGACCAAATCGCAGTT
TCCTTTTATTAACGTCTCCCTTGCTTCGTGAGGCAACTTTAGAAATACTC
TCAGAAGCACCAAGGATCGAGGTCCCATCCTTGTTTGGCTTTGATCGTTC
AGATCGATAGGCCATCCTCGATGAATTCTGCCCATCCTCATACCTACTAG
ATGCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATCATCGTCGCGTGAATCTGTAGCAGAGCCAACTCCATCAGCC
TGGGCTGAATCTGGGACAGAGACAAAGCCATCAGCCTGGGCTGAATCGGT
AGCAGAGCCAATGGGTATGCAGCCTGAAGAGCAGCACAGGCTGCAGGGGA
ATGTTCAACTGATGCGACTGTTGTACGACGCTTATTTGTCAGCGGCGCGG
AACTAGCCAAACTTGGATGTAGTGTGGTTGGATGCTGCAAGCCATCGACG
CAGTAGGGATTTGAGGTACGGTTGGTCACGGTCGTAAGAACTCTAAGTTG
GTGGTGAATATCGGCTAGCCTGCTGAATGTTTACTATGAGGCCTGAGAAT
CACAATTACCGACAAAGTCACGAAAAACTCTTTGGAACGGCGTTACGCTG
CACGCGGCATGACCTTCATCCCGGCGGCAACAGAGAACGGAGTTGCAATC
AAACTAGAGTCAGATGCAGCTATCACTGCAGTAATATGTGTTCCATTTTA
TTTTATATTGTGGCGCTTTTCAACCAAATTTGTCGGTGCACTAGTGCAAA
CCCTCACTCGTTTTCCACGTATTCCGTTCAGAGCCGTTTCGTGCAGATTT
CATATTCTGTTGGGGTCGTCAAATATAGCAGGGTGTTTTCTTTTTCGTGC
TTACATGTGGTTGACTAACGTACCGGAATGATCCATGCTTTCCCCAAGAA
CGTACTTATGTTTATGGTTTTTTGCTTTCCATATTGGTATATCAGACCCA
CCTGGGCGAAAATATGGAACTATTTCCATGCTAGGACGCTTATTTTTGTA
CATTTTGCACCCATCATTCGCTACTTATCCCATTTTATATCTAATAAGGT
TAAAGTCTAAAGCAAATTCTCTTTCTCCATCATGTTTAGTTCGTTTGACA
ATCATTTTTTGTTCGGTAGCGTTAAGAATCGCGGGTCATCCAGGATGGTA
CACGATAGGTTTGGGAGCTTATTGAGCCATGTATTGCGAGTTGTCCTCCA
CGTTCTGCGGAGTATATAAAATATTGATGTTGATAAATCATATTTGGTTT
CTACGTTTGCAACTTTGTGTTGTTGCTTCAGATGCTTTAAAGCACGAATA
TGGGCAGCTTTGTTTTGCTCCCTTTTGGCTCTTCTTTTCTTAAGACGAGC
TGTCTGCTGCCGCATGGACTCCGGCATTTTGTGGACGTCCCGAATATGGT
ATTGGAACGGCCTGTAGGACCGCTCAGAGTGGAAAAGGAGGTAAACACTC
AGTTAACTACAGCCTATAGCCTATTGAGATCTAAAGAAAGAGTGGCTCTG
AAGATTTGTATAACTTTGCGTTTTGTTAAATTTTCTTCTTGAGAGGGTTA
CCCCAAGCGCTGTGAAGGCCGGCGTCCGGGCAGTACAGTGCCTTTTCTCA
GGGGTGCCATCTGACGCAGCTTTTCATTTCACCGCCGCCCCAAAATCAGG
GATCTTCATCGCCCCGTCTTCGGCTTCCAGGAAGTTGTCTGATTTGATAT
CACGGTGCACAATGTTCATGTGATGCAGATACTTCATCCCCGCGAGCACA
TCAACAAATGCACGTCTAGCGCAATCCAAACTCAGCGGGTCTGCCCCTTC
CAGCTTGGCAGAACCCATGATCGGGCCGCGCAACACAAACTCGAGAATAC
AGCAAAAGCGAATCATCAGTGTCGTTGTACACGCCTGTGTACTGCATGAC
ATTTTCCTGACAAAGCGACTTAATCGTTTAGATTCCATTGAAATCCTTTT
CCGCCAGTTCCGTAAGCTGCTTTGAGTTAAAATACACAGCATACACCGCG
ATGGTCCAAAGTCATTTTGTCATTATGGCCTTGCTGAGCATCTTGACGGC
ATAAAAATGGCGATTGTGCACGAACAGTGCCAGCTTGACCTTGCCGAGGA
AGTCCCTGTCAATGGTACCGAGCAAGCTGTAGTGCTCCAGCCGTTTTCTC
GATTCCGCTTTCTTGCCGTTCCACCAGTCGTTCAAGGGGTCCTACTTCTC
CCTGCGCCTCACCAGCCGATCGCGCGACTTGACGGTGACGTACGCGGTCG
TCAGGCAGCACAGCCCTCTGAACCAGTTGTCGGCGCAGCCCTTGGACGGG
AACAGAAACTCGACGCTCTGGCGCGTGTCGCTGAACTCCATGCTCACCTT
GCCGTCTGAGCGTTTGAGCTTTCTCACGTATTTGGACAAGAAGCCAAGAC
TCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1298832..1305636-

>Gvermi7650.t1 ID=Gvermi7650.t1|Name=Gvermi7650.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=396bp|location=Sequence derived from alignment at ScGOVlb_64:1298832..1305636- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTAGTCTCACCATTGTGTCCAAGAACGGCACCCAGGTCTTGAAATG
CGTCGCTGACGTTGAAAATGTTTACAGCCTCCGGGTCAGTCTAAGTCGTG
AGCTAGTATGGGATGCTGCAAAGAAATCATGGACATGGTACAAGACCTGG
AAAGTTCCGGATTGCTTGTCGTTCAAGGGGTCCTACTTCTCCCTGCGCCT
CACCAGCCGATCGCGCGACTTGACGGTGACGTACGCGGTCGTCAGGCAGC
ACAGCCCTCTGAACCAGTTGTCGGCGCAGCCCTTGGACGGGAACAGAAAC
TCGACGCTCTGGCGCGTGTCGCTGAACTCCATGCTCACCTTGCCGTCTGA
GCGTTTGAGCTTTCTCACGTATTTGGACAAGAAGCCAAGACTCTGA
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