Gvermi7609.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7609.t1
Unique NameGvermi7609.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:261396..262583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7609Gvermi7609Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 261396..262583 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7609.t1.start1Gvermi7609.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 261396..261398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7609.t1.CDS1Gvermi7609.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 261396..262583 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7609.t1.exon1Gvermi7609.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 261396..262583 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7609.t1.stop1Gvermi7609.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 262581..262583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7609.t1Gvermi7609.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 261396..262583 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7609.t1 ID=Gvermi7609.t1|Name=Gvermi7609.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp
MSDVRPSTAHFCRKDIGKYPKRACLETPLLNLTVACMSSESPVVPPPVVT
KAHGSPLCEQGPPVIKEYDLEPHATPASRNVSMLLRQSTVLIGCTFTKFF
RKHHAARIIIDSDGNRPISVRWVRLPTKLSEMVLLNNDLAVVLAGGTLSV
VDFSLQTVSCVVESVLDVSRVVRLDDSSFAAFSAGFAYVIRMSDGCSYDV
RRIDEPVSHYVTCCFDDRFVTLHAGRGVVRNKHSMDGASFVCHSQMKVEN
VILSEKWLVVHYFEGYLSRFHVYNAQTLVLSHSVSSESYALHSKLELVGD
LLFWNRNDGNYFKFCSPYDNSLNLSWMMCMDVCSGHLLWKAVYSSFAGVP
GGVYPFKVLKDATVLIQSSNHMFDRLSLPQQIARPLRASLEAASM*
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spliced messenger RNA

>Gvermi7609.t1 ID=Gvermi7609.t1|Name=Gvermi7609.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_64:261396..262583+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGATGTGCGGCCATCAACAGCACATTTCTGCCGCAAGGATATAGG
CAAATATCCGAAGCGTGCATGTCTGGAAACGCCGCTGCTGAACCTCACCG
TGGCCTGCATGTCGTCAGAATCCCCGGTGGTGCCGCCGCCTGTCGTCACC
AAAGCCCACGGCTCCCCACTCTGCGAGCAGGGACCCCCTGTAATCAAAGA
GTACGATCTCGAGCCGCACGCCACACCCGCGTCTCGCAATGTGTCAATGC
TGCTCCGTCAGTCCACAGTTCTCATTGGCTGCACATTCACGAAGTTTTTC
CGCAAGCACCACGCTGCGCGCATCATCATAGACTCCGACGGAAATCGGCC
CATCTCTGTGCGCTGGGTGCGGCTGCCGACCAAGCTGAGTGAGATGGTGC
TTCTAAATAACGATCTGGCCGTCGTGCTGGCCGGCGGTACTCTGTCAGTC
GTTGATTTCTCTTTACAAACTGTCTCTTGCGTCGTTGAAAGTGTGCTTGA
TGTCTCTCGCGTGGTGCGTTTGGATGACTCCTCCTTTGCGGCCTTTTCTG
CTGGCTTTGCGTACGTAATTCGCATGTCAGATGGATGTTCGTACGACGTT
AGGAGGATAGATGAACCAGTCTCTCACTACGTCACCTGCTGCTTTGACGA
TCGGTTCGTAACGTTGCATGCGGGAAGGGGCGTTGTGCGCAACAAGCACA
GTATGGATGGGGCCTCATTTGTGTGCCACTCTCAAATGAAGGTGGAAAAC
GTCATTCTTTCTGAAAAGTGGCTTGTTGTCCACTACTTCGAAGGGTATTT
GAGCAGATTTCACGTTTACAACGCGCAAACGCTTGTGCTCAGTCACTCTG
TCTCATCCGAATCATATGCTTTGCACTCCAAGTTAGAACTGGTTGGTGAC
TTGTTGTTCTGGAACAGAAACGATGGAAATTATTTCAAGTTTTGCAGTCC
GTACGATAATAGTCTGAATTTGTCTTGGATGATGTGCATGGACGTTTGCT
CCGGTCATCTTTTATGGAAGGCAGTGTATTCGTCATTCGCGGGCGTTCCG
GGGGGCGTTTATCCGTTTAAAGTGTTGAAAGATGCCACCGTGCTTATCCA
GTCAAGCAATCATATGTTTGATAGGTTATCTCTGCCGCAGCAAATTGCTC
GTCCGTTGCGAGCCAGCTTGGAAGCAGCGAGCATGTAG
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protein sequence of Gvermi7609.t1

>Gvermi7609.t1 ID=Gvermi7609.t1|Name=Gvermi7609.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=396bp
MSDVRPSTAHFCRKDIGKYPKRACLETPLLNLTVACMSSESPVVPPPVVT
KAHGSPLCEQGPPVIKEYDLEPHATPASRNVSMLLRQSTVLIGCTFTKFF
RKHHAARIIIDSDGNRPISVRWVRLPTKLSEMVLLNNDLAVVLAGGTLSV
VDFSLQTVSCVVESVLDVSRVVRLDDSSFAAFSAGFAYVIRMSDGCSYDV
RRIDEPVSHYVTCCFDDRFVTLHAGRGVVRNKHSMDGASFVCHSQMKVEN
VILSEKWLVVHYFEGYLSRFHVYNAQTLVLSHSVSSESYALHSKLELVGD
LLFWNRNDGNYFKFCSPYDNSLNLSWMMCMDVCSGHLLWKAVYSSFAGVP
GGVYPFKVLKDATVLIQSSNHMFDRLSLPQQIARPLRASLEAASM*
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mRNA from alignment at ScGOVlb_64:261396..262583+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7609.t1 ID=Gvermi7609.t1|Name=Gvermi7609.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_64:261396..262583+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGATGTGCGGCCATCAACAGCACATTTCTGCCGCAAGGATATAGG
CAAATATCCGAAGCGTGCATGTCTGGAAACGCCGCTGCTGAACCTCACCG
TGGCCTGCATGTCGTCAGAATCCCCGGTGGTGCCGCCGCCTGTCGTCACC
AAAGCCCACGGCTCCCCACTCTGCGAGCAGGGACCCCCTGTAATCAAAGA
GTACGATCTCGAGCCGCACGCCACACCCGCGTCTCGCAATGTGTCAATGC
TGCTCCGTCAGTCCACAGTTCTCATTGGCTGCACATTCACGAAGTTTTTC
CGCAAGCACCACGCTGCGCGCATCATCATAGACTCCGACGGAAATCGGCC
CATCTCTGTGCGCTGGGTGCGGCTGCCGACCAAGCTGAGTGAGATGGTGC
TTCTAAATAACGATCTGGCCGTCGTGCTGGCCGGCGGTACTCTGTCAGTC
GTTGATTTCTCTTTACAAACTGTCTCTTGCGTCGTTGAAAGTGTGCTTGA
TGTCTCTCGCGTGGTGCGTTTGGATGACTCCTCCTTTGCGGCCTTTTCTG
CTGGCTTTGCGTACGTAATTCGCATGTCAGATGGATGTTCGTACGACGTT
AGGAGGATAGATGAACCAGTCTCTCACTACGTCACCTGCTGCTTTGACGA
TCGGTTCGTAACGTTGCATGCGGGAAGGGGCGTTGTGCGCAACAAGCACA
GTATGGATGGGGCCTCATTTGTGTGCCACTCTCAAATGAAGGTGGAAAAC
GTCATTCTTTCTGAAAAGTGGCTTGTTGTCCACTACTTCGAAGGGTATTT
GAGCAGATTTCACGTTTACAACGCGCAAACGCTTGTGCTCAGTCACTCTG
TCTCATCCGAATCATATGCTTTGCACTCCAAGTTAGAACTGGTTGGTGAC
TTGTTGTTCTGGAACAGAAACGATGGAAATTATTTCAAGTTTTGCAGTCC
GTACGATAATAGTCTGAATTTGTCTTGGATGATGTGCATGGACGTTTGCT
CCGGTCATCTTTTATGGAAGGCAGTGTATTCGTCATTCGCGGGCGTTCCG
GGGGGCGTTTATCCGTTTAAAGTGTTGAAAGATGCCACCGTGCTTATCCA
GTCAAGCAATCATATGTTTGATAGGTTATCTCTGCCGCAGCAAATTGCTC
GTCCGTTGCGAGCCAGCTTGGAAGCAGCGAGCATGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:261396..262583+

>Gvermi7609.t1 ID=Gvermi7609.t1|Name=Gvermi7609.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1188bp|location=Sequence derived from alignment at ScGOVlb_64:261396..262583+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGATGTGCGGCCATCAACAGCACATTTCTGCCGCAAGGATATAGG
CAAATATCCGAAGCGTGCATGTCTGGAAACGCCGCTGCTGAACCTCACCG
TGGCCTGCATGTCGTCAGAATCCCCGGTGGTGCCGCCGCCTGTCGTCACC
AAAGCCCACGGCTCCCCACTCTGCGAGCAGGGACCCCCTGTAATCAAAGA
GTACGATCTCGAGCCGCACGCCACACCCGCGTCTCGCAATGTGTCAATGC
TGCTCCGTCAGTCCACAGTTCTCATTGGCTGCACATTCACGAAGTTTTTC
CGCAAGCACCACGCTGCGCGCATCATCATAGACTCCGACGGAAATCGGCC
CATCTCTGTGCGCTGGGTGCGGCTGCCGACCAAGCTGAGTGAGATGGTGC
TTCTAAATAACGATCTGGCCGTCGTGCTGGCCGGCGGTACTCTGTCAGTC
GTTGATTTCTCTTTACAAACTGTCTCTTGCGTCGTTGAAAGTGTGCTTGA
TGTCTCTCGCGTGGTGCGTTTGGATGACTCCTCCTTTGCGGCCTTTTCTG
CTGGCTTTGCGTACGTAATTCGCATGTCAGATGGATGTTCGTACGACGTT
AGGAGGATAGATGAACCAGTCTCTCACTACGTCACCTGCTGCTTTGACGA
TCGGTTCGTAACGTTGCATGCGGGAAGGGGCGTTGTGCGCAACAAGCACA
GTATGGATGGGGCCTCATTTGTGTGCCACTCTCAAATGAAGGTGGAAAAC
GTCATTCTTTCTGAAAAGTGGCTTGTTGTCCACTACTTCGAAGGGTATTT
GAGCAGATTTCACGTTTACAACGCGCAAACGCTTGTGCTCAGTCACTCTG
TCTCATCCGAATCATATGCTTTGCACTCCAAGTTAGAACTGGTTGGTGAC
TTGTTGTTCTGGAACAGAAACGATGGAAATTATTTCAAGTTTTGCAGTCC
GTACGATAATAGTCTGAATTTGTCTTGGATGATGTGCATGGACGTTTGCT
CCGGTCATCTTTTATGGAAGGCAGTGTATTCGTCATTCGCGGGCGTTCCG
GGGGGCGTTTATCCGTTTAAAGTGTTGAAAGATGCCACCGTGCTTATCCA
GTCAAGCAATCATATGTTTGATAGGTTATCTCTGCCGCAGCAAATTGCTC
GTCCGTTGCGAGCCAGCTTGGAAGCAGCGAGCATGTAG
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