Gvermi7717.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7717.t1
Unique NameGvermi7717.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:3573832..3575445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog402777.KB235906_gene388
PFAMsALO,BBE,Cytokin-bind,FAD_binding_4
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00195,RC00346,RC00869
KEGG koko:K00103
KEGG ReactionR00647,R03184,R10053
KEGG Pathwayko00053,ko01100,map00053,map01100
KEGG ModuleM00129
Evalue1.61e-68
EggNOG OGsCOG0277@1|root,COG0277@2|Bacteria,1G6C2@1117|Cyanobacteria,1HDSK@1150|Oscillatoriales
EC1.1.3.8
DescriptionFAD binding domain
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7717Gvermi7717Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 3573832..3575445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7717.t1Gvermi7717.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 3573832..3575445 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7717.t1.stop1Gvermi7717.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 3573832..3573834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7717.t1.CDS1Gvermi7717.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3573832..3574179 -
Gvermi7717.t1.CDS2Gvermi7717.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 3574756..3575445 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7717.t1.exon1Gvermi7717.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3573832..3574179 -
Gvermi7717.t1.exon2Gvermi7717.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 3574756..3575445 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7717.t1.intron1Gvermi7717.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 3574180..3574755 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7717.t1.start1Gvermi7717.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 3575443..3575445 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7717.t1 ID=Gvermi7717.t1|Name=Gvermi7717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=346bp
MQGDEDYTKKAKQYATSSYPSDRSTPFIIGYPQSVNDIKVAVAFAKANQK
SIVARSGGHQYSCLSGGDQSVIVLSMERFSYAETVDDTSKLVTVGCGTPL
THISKYLTDRQLTVPHGECPLVCVGGHTQSGGYGHTLRSQGLLVDYVRSF
RIVLADCSYIEVFRPTVQAVDKHVDNDDIYYGVLGGSPGSFGVVTEYTYE
AVRDQDHPFSTGHSAQYMYTKKRFRNLMEIMGFGGGKHKNNSNRMYTVAP
RRDLIWALVYDVFYKEGQKQVAIDYQSEMKMLLENTFPEKDRVRMFWGSF
GNTDLNNVWPMYYDDEASYRRLQTIKQAVDGMDVFHTEFTVQLPS*
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spliced messenger RNA

>Gvermi7717.t1 ID=Gvermi7717.t1|Name=Gvermi7717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_64:3573832..3575445- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGGGGATGAAGACTACACCAAGAAAGCCAAGCAGTATGCCACGTC
TTCTTATCCATCAGACCGCTCTACTCCGTTCATTATTGGATATCCGCAAA
GCGTTAATGATATTAAGGTGGCTGTCGCCTTCGCGAAAGCAAACCAGAAA
AGTATTGTGGCGCGAAGCGGTGGCCACCAGTATTCTTGTTTGAGCGGCGG
AGATCAATCTGTCATAGTGTTGAGCATGGAACGATTCAGCTACGCCGAAA
CAGTTGACGATACATCCAAACTGGTTACAGTAGGATGTGGTACCCCACTT
ACTCACATCTCCAAGTATTTGACGGACAGACAGCTCACTGTGCCACACGG
TGAGTGTCCTTTGGTCTGCGTTGGTGGTCATACCCAGAGTGGAGGATATG
GTCATACATTACGCAGTCAAGGATTGTTGGTTGACTACGTTCGCTCGTTC
AGAATCGTTTTGGCAGACTGCAGCTATATTGAAGTATTTCGTCCCACAGT
CCAAGCAGTTGACAAACACGTCGACAATGACGACATATATTACGGAGTAC
TTGGAGGCAGTCCTGGCTCTTTTGGGGTGGTGACAGAATATACATATGAA
GCCGTAAGAGATCAAGATCATCCCTTTTCTACAGGCCACAGCGCTCAATA
CATGTACACCAAAAAACGTTTTCGAAACCTCATGGAAATCATGGGCTTTG
GCGGTGGAAAGCACAAGAACAACAGTAACCGAATGTATACAGTTGCACCT
CGTCGAGATTTAATTTGGGCATTGGTGTATGATGTGTTTTACAAAGAAGG
TCAGAAGCAAGTTGCAATAGACTATCAATCGGAAATGAAGATGTTATTGG
AAAATACGTTTCCTGAGAAAGACCGAGTGCGAATGTTTTGGGGTTCGTTT
GGCAATACGGATTTGAACAATGTGTGGCCTATGTACTACGATGATGAAGC
ATCATATCGTCGTCTTCAAACCATAAAACAGGCAGTTGATGGAATGGATG
TGTTCCACACGGAGTTCACGGTGCAGCTACCGTCGTAG
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protein sequence of Gvermi7717.t1

>Gvermi7717.t1 ID=Gvermi7717.t1|Name=Gvermi7717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=346bp
MQGDEDYTKKAKQYATSSYPSDRSTPFIIGYPQSVNDIKVAVAFAKANQK
SIVARSGGHQYSCLSGGDQSVIVLSMERFSYAETVDDTSKLVTVGCGTPL
THISKYLTDRQLTVPHGECPLVCVGGHTQSGGYGHTLRSQGLLVDYVRSF
RIVLADCSYIEVFRPTVQAVDKHVDNDDIYYGVLGGSPGSFGVVTEYTYE
AVRDQDHPFSTGHSAQYMYTKKRFRNLMEIMGFGGGKHKNNSNRMYTVAP
RRDLIWALVYDVFYKEGQKQVAIDYQSEMKMLLENTFPEKDRVRMFWGSF
GNTDLNNVWPMYYDDEASYRRLQTIKQAVDGMDVFHTEFTVQLPS*
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mRNA from alignment at ScGOVlb_64:3573832..3575445-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7717.t1 ID=Gvermi7717.t1|Name=Gvermi7717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_64:3573832..3575445- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGGGGATGAAGACTACACCAAGAAAGCCAAGCAGTATGCCACGTC
TTCTTATCCATCAGACCGCTCTACTCCGTTCATTATTGGATATCCGCAAA
GCGTTAATGATATTAAGGTGGCTGTCGCCTTCGCGAAAGCAAACCAGAAA
AGTATTGTGGCGCGAAGCGGTGGCCACCAGTATTCTTGTTTGAGCGGCGG
AGATCAATCTGTCATAGTGTTGAGCATGGAACGATTCAGCTACGCCGAAA
CAGTTGACGATACATCCAAACTGGTTACAGTAGGATGTGGTACCCCACTT
ACTCACATCTCCAAGTATTTGACGGACAGACAGCTCACTGTGCCACACGG
TGAGTGTCCTTTGGTCTGCGTTGGTGGTCATACCCAGAGTGGAGGATATG
GTCATACATTACGCAGTCAAGGATTGTTGGTTGACTACGTTCGCTCGTTC
AGAATCGTTTTGGCAGACTGCAGCTATATTGAAGTATTTCGTCCCACAGT
CCAAGCAGTTGACAAACACGTCGACAATGACGACATATATTACGGAGTAC
TTGGAGGCAGTCCTGGCTCTTTTGGGGTGGTGACAGAATATACATATGAA
GCCGTAAGAGATCAAGATCATCCCTTTTCTACAGGCCACAGCGCTCAATA
CATGTACACCAAAAAACGTTTTCGAAACCTCATGGAAATCGTGCAGGAAT
GGTCACATGGTATTAAGAACGATACTTGGCAGGCAGATATTGATATGATG
GTCACAGCTATATCACCTGATGCACAAAGCATGCTGCCCGAATGGTGTCA
TGATCAAGGCTCTATTCCTGGTTCTCTCCCTCCGGATGTGAGCTCCTCTT
CCAAATCCATGTCTGCGACAGAAACTCCGACTGCAACTGACATTCTTCCG
GATCCAACACTTGGAATTTTGCAGCTGGAACTTCTGTACGGGAACGAATC
AGGGCAGGCAGATACAACCAATCCGACGGTCAGCGATCGTTTCAATCAAA
TGCATGACCATGTTCTCTCTAATGATGGCATTTTCCCACTTCCGTCTTAT
GTTGATTTCTCGAGTGATGAGCCGCACTCTCTTTCCTTCATGTGTGATTC
ATGGGTGCGACGATTCGGAACGACTATTGATGGAAGAGAATTTGTTTATC
CGTACCAGAAGCGACTAAATGGTACGTTTGACGCCCTTTCAGATGACTTT
GTCAACGGTTTTGTGGACCTAGTTCATAAAGTTCTTGGTGACCGTAATGT
GCGCATGGTTTTCCAGATGGGCTTTGGCGGTGGAAAGCACAAGAACAACA
GTAACCGAATGTATACAGTTGCACCTCGTCGAGATTTAATTTGGGCATTG
GTGTATGATGTGTTTTACAAAGAAGGTCAGAAGCAAGTTGCAATAGACTA
TCAATCGGAAATGAAGATGTTATTGGAAAATACGTTTCCTGAGAAAGACC
GAGTGCGAATGTTTTGGGGTTCGTTTGGCAATACGGATTTGAACAATGTG
TGGCCTATGTACTACGATGATGAAGCATCATATCGTCGTCTTCAAACCAT
AAAACAGGCAGTTGATGGAATGGATGTGTTCCACACGGAGTTCACGGTGC
AGCTACCGTCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:3573832..3575445-

>Gvermi7717.t1 ID=Gvermi7717.t1|Name=Gvermi7717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1038bp|location=Sequence derived from alignment at ScGOVlb_64:3573832..3575445- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGGGGATGAAGACTACACCAAGAAAGCCAAGCAGTATGCCACGTC
TTCTTATCCATCAGACCGCTCTACTCCGTTCATTATTGGATATCCGCAAA
GCGTTAATGATATTAAGGTGGCTGTCGCCTTCGCGAAAGCAAACCAGAAA
AGTATTGTGGCGCGAAGCGGTGGCCACCAGTATTCTTGTTTGAGCGGCGG
AGATCAATCTGTCATAGTGTTGAGCATGGAACGATTCAGCTACGCCGAAA
CAGTTGACGATACATCCAAACTGGTTACAGTAGGATGTGGTACCCCACTT
ACTCACATCTCCAAGTATTTGACGGACAGACAGCTCACTGTGCCACACGG
TGAGTGTCCTTTGGTCTGCGTTGGTGGTCATACCCAGAGTGGAGGATATG
GTCATACATTACGCAGTCAAGGATTGTTGGTTGACTACGTTCGCTCGTTC
AGAATCGTTTTGGCAGACTGCAGCTATATTGAAGTATTTCGTCCCACAGT
CCAAGCAGTTGACAAACACGTCGACAATGACGACATATATTACGGAGTAC
TTGGAGGCAGTCCTGGCTCTTTTGGGGTGGTGACAGAATATACATATGAA
GCCGTAAGAGATCAAGATCATCCCTTTTCTACAGGCCACAGCGCTCAATA
CATGTACACCAAAAAACGTTTTCGAAACCTCATGGAAATCATGGGCTTTG
GCGGTGGAAAGCACAAGAACAACAGTAACCGAATGTATACAGTTGCACCT
CGTCGAGATTTAATTTGGGCATTGGTGTATGATGTGTTTTACAAAGAAGG
TCAGAAGCAAGTTGCAATAGACTATCAATCGGAAATGAAGATGTTATTGG
AAAATACGTTTCCTGAGAAAGACCGAGTGCGAATGTTTTGGGGTTCGTTT
GGCAATACGGATTTGAACAATGTGTGGCCTATGTACTACGATGATGAAGC
ATCATATCGTCGTCTTCAAACCATAAAACAGGCAGTTGATGGAATGGATG
TGTTCCACACGGAGTTCACGGTGCAGCTACCGTCGTAG
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