Gvermi7637.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7637.t1
Unique NameGvermi7637.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1024383..1024966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps37976
PFAMsPro_isomerase
Max annot lvl2836|Bacillariophyta
KEGG koko:K09565
KEGG Pathwayko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145
Evalue1.03e-94
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota,2XEKT@2836|Bacillariophyta
EC5.2.1.8
DescriptionPPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7637Gvermi7637Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1024383..1024966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7637.t1Gvermi7637.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1024383..1024966 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7637.t1.start1Gvermi7637.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1024383..1024385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7637.t1.CDS1Gvermi7637.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1024383..1024542 +
Gvermi7637.t1.CDS2Gvermi7637.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1024629..1024966 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7637.t1.exon1Gvermi7637.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1024383..1024542 +
Gvermi7637.t1.exon2Gvermi7637.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1024629..1024966 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7637.t1.intron1Gvermi7637.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1024543..1024628 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7637.t1.stop1Gvermi7637.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1024964..1024966 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7637.t1 ID=Gvermi7637.t1|Name=Gvermi7637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=166bp
MASNPRVYFDMEIGGAPAGRIVMELRADVVPKTAENFRALCTGEKGFGYA
GSIFHRVIPGFMCQGGDFTNHNGTGGKSIYGHKFEDENFKLRHTAAGVLS
MANAGANTNGSQFFICTAKTAWLDGKHVVFGSVVDGLDVVRRIEGVGSPA
GPTSKPVRVAASGQL*
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spliced messenger RNA

>Gvermi7637.t1 ID=Gvermi7637.t1|Name=Gvermi7637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=498bp|location=Sequence derived from alignment at ScGOVlb_64:1024383..1024966+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCAACCCGCGAGTGTACTTCGACATGGAGATCGGCGGCGCGCC
CGCCGGCCGCATCGTCATGGAGCTGCGCGCCGACGTCGTGCCCAAGACCG
CCGAGAACTTCCGCGCGCTGTGCACCGGTGAGAAGGGATTCGGCTACGCC
GGTTCCATCTTCCACCGCGTCATCCCCGGCTTCATGTGCCAGGGCGGCGA
CTTCACCAACCACAACGGCACGGGCGGCAAGTCCATCTACGGCCACAAGT
TTGAGGACGAAAACTTCAAGCTCAGGCACACGGCCGCCGGCGTCTTGTCC
ATGGCCAACGCCGGCGCCAACACCAACGGCTCGCAGTTCTTCATCTGCAC
CGCCAAGACCGCCTGGCTGGACGGCAAGCACGTCGTCTTCGGCTCGGTCG
TCGACGGGCTGGACGTGGTGCGCCGCATCGAGGGCGTGGGCTCGCCGGCC
GGGCCCACGTCCAAGCCCGTCAGGGTGGCCGCCTCGGGGCAGCTGTGA
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protein sequence of Gvermi7637.t1

>Gvermi7637.t1 ID=Gvermi7637.t1|Name=Gvermi7637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=166bp
MASNPRVYFDMEIGGAPAGRIVMELRADVVPKTAENFRALCTGEKGFGYA
GSIFHRVIPGFMCQGGDFTNHNGTGGKSIYGHKFEDENFKLRHTAAGVLS
MANAGANTNGSQFFICTAKTAWLDGKHVVFGSVVDGLDVVRRIEGVGSPA
GPTSKPVRVAASGQL*
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mRNA from alignment at ScGOVlb_64:1024383..1024966+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7637.t1 ID=Gvermi7637.t1|Name=Gvermi7637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=584bp|location=Sequence derived from alignment at ScGOVlb_64:1024383..1024966+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCCAACCCGCGAGTGTACTTCGACATGGAGATCGGCGGCGCGCC
CGCCGGCCGCATCGTCATGGAGCTGCGCGCCGACGTCGTGCCCAAGACCG
CCGAGAACTTCCGCGCGCTGTGCACCGGTGAGAAGGGATTCGGCTACGCC
GGTTCCATCTGTAAGTTGCCGCTCCCCcccgcgcccgcgcccgcgcccgc
gcccgcgccGCCTGCTCACCGCGCCCGCCGCGCCCGCCGCGCGCAGTCCA
CCGCGTCATCCCCGGCTTCATGTGCCAGGGCGGCGACTTCACCAACCACA
ACGGCACGGGCGGCAAGTCCATCTACGGCCACAAGTTTGAGGACGAAAAC
TTCAAGCTCAGGCACACGGCCGCCGGCGTCTTGTCCATGGCCAACGCCGG
CGCCAACACCAACGGCTCGCAGTTCTTCATCTGCACCGCCAAGACCGCCT
GGCTGGACGGCAAGCACGTCGTCTTCGGCTCGGTCGTCGACGGGCTGGAC
GTGGTGCGCCGCATCGAGGGCGTGGGCTCGCCGGCCGGGCCCACGTCCAA
GCCCGTCAGGGTGGCCGCCTCGGGGCAGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1024383..1024966+

>Gvermi7637.t1 ID=Gvermi7637.t1|Name=Gvermi7637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=498bp|location=Sequence derived from alignment at ScGOVlb_64:1024383..1024966+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCCAACCCGCGAGTGTACTTCGACATGGAGATCGGCGGCGCGCC
CGCCGGCCGCATCGTCATGGAGCTGCGCGCCGACGTCGTGCCCAAGACCG
CCGAGAACTTCCGCGCGCTGTGCACCGGTGAGAAGGGATTCGGCTACGCC
GGTTCCATCTTCCACCGCGTCATCCCCGGCTTCATGTGCCAGGGCGGCGA
CTTCACCAACCACAACGGCACGGGCGGCAAGTCCATCTACGGCCACAAGT
TTGAGGACGAAAACTTCAAGCTCAGGCACACGGCCGCCGGCGTCTTGTCC
ATGGCCAACGCCGGCGCCAACACCAACGGCTCGCAGTTCTTCATCTGCAC
CGCCAAGACCGCCTGGCTGGACGGCAAGCACGTCGTCTTCGGCTCGGTCG
TCGACGGGCTGGACGTGGTGCGCCGCATCGAGGGCGTGGGCTCGCCGGCC
GGGCCCACGTCCAAGCCCGTCAGGGTGGCCGCCTCGGGGCAGCTGTGA
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