Gvermi7684.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7684.t1
Unique Name	Gvermi7684.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	440

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:2368028..2369347 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_018602-tr
PFAMs	RVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl	33208\|Metazoa
Evalue	3.1e-85
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Description	K02A2.6-like
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7684	Gvermi7684	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 2368028..2369347 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7684.t1.start1	Gvermi7684.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 2368028..2368030 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7684.t1.CDS1	Gvermi7684.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 2368028..2369347 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7684.t1.exon1	Gvermi7684.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 2368028..2369347 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7684.t1.stop1	Gvermi7684.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 2369345..2369347 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7684.t1	Gvermi7684.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 2368028..2369347 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:2368028..2369347+
coding sequence from alignment at ScGOVlb_64:2368028..2369347+

mRNA sequence

>Gvermi7684.t1 ID=Gvermi7684.t1|Name=Gvermi7684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=440bp
MEAGRPKISDVETARPKISDARSDGPMTSDVRSMDPKLLTGEAGPSPSGT
DVPNSSGDATATSSEDRPESPGDDLKDPVQELEQLDLSHVPGTHRDRLRH
MLREFTPMWDGSLGKIAVAEHRIDLLPNTRPIAQPPYRAGTTAREEEKAQ
LEKMLRAGVIEPAQSPWASPVVLAPKPDGSWRFCIDYRKLDAATVKDVYP
IPRMDECIDLLGKAKMFTTLDTNWGYWQVPVREEDRDKTAFVCHQGLYRF
NRMPFGLTNAPATFQRAVDILLAHYKWKTCLVYLDDIIVFSSDLYEHLTH
VPDVMRVLRDAGITLKLGKCEFFTDTVKYLGHIIRPERLSVDAARVEFLK
QAKHSRTQTELRSFLGLCNVYRRFIPRFADIAAPLNELLRKDRPVKLEAF
DDQQASAFTSLIEAVTSPPILTLPKAGLSYAVDTDASNF*

spliced messenger RNA

>Gvermi7684.t1 ID=Gvermi7684.t1|Name=Gvermi7684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at ScGOVlb_64:2368028..2369347+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atggaagctggaagaccgaagatatcggatgtcgaaactgcaagaccgaa
gatatcggacgcacgaagtgatggaccgatgacttcggatgttagaagta
tggacccaaagcttttgacgggagaagcagggccgtcaccgtcgggaacg
gatgttccgaactcgtcgggagacgccacggcgacctcgtcggaagatag
gccagaatcccctggggatgatctgaaagatcctgtacaggaactggagc
aattggacctgagccatgtgccaggaacgcaccgtgaccgtttacggcat
atgcttcgtgagtttacgcccatgtgggacgggtcccttgggaaaatcgc
ggttgccgaacatcggattgatctacttccgaatactcgaccaattgcgc
aacccccttacagggcaggaacgacagctcgggaagaagaaaaggctcaa
cttgagaagatgctccgggccggagtcattgagcctgctcaatcgccatg
ggcttcgcccgtggtcctggcgcccaagcctgatgggtcctggcgattct
gtatcgactaccgcaagttggacgcggcgaccgtgaaggacgtttatcct
atcccacggatggacgaatgcatcgatttgttgggaaaggccaagatgtt
caccaccctggacaccaattggggatattggcaggtgcccgttcgggaag
aggaccgtgataaaacggctttcgtttgccatcaggggctgtaccgattc
aatcggatgccttttggtctcacaaacgcgcccgccacgttccaacgagc
agtggacatattgctagcccactacaagtggaaaacttgcctagtctacc
tggacgacatcattgtcttctccagtgacctgtacgagcacctgacccat
gtaccggacgtgatgcgagtcctgcgggatgcaggcataaccctcaagtt
gggcaaatgcgagttctttaccgatacggtcaaatacctcggtcatatta
tccgtccggaacggctgtcggtcgatgccgctcgtgtggagttcttgaaa
caggctaagcattcgcgcactcaaacggaactccgatcatttctcggtct
gtgcaatgtgtatcgccgcttcataccgcggtttgcggacatcgccgcac
cgttgaatgaactcctacggaaagatcggccagtgaaactggaagcgttc
gacgaccaacaagcatcggcattcacctcgctgattgaggccgtaacgtc
gccgccgatactgaccctgccgaaagctgggctctcgtatgccgttgaca
cggacgcgagcaacttctag

protein sequence of Gvermi7684.t1

>Gvermi7684.t1 ID=Gvermi7684.t1|Name=Gvermi7684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=440bp
MEAGRPKISDVETARPKISDARSDGPMTSDVRSMDPKLLTGEAGPSPSGT
DVPNSSGDATATSSEDRPESPGDDLKDPVQELEQLDLSHVPGTHRDRLRH
MLREFTPMWDGSLGKIAVAEHRIDLLPNTRPIAQPPYRAGTTAREEEKAQ
LEKMLRAGVIEPAQSPWASPVVLAPKPDGSWRFCIDYRKLDAATVKDVYP
IPRMDECIDLLGKAKMFTTLDTNWGYWQVPVREEDRDKTAFVCHQGLYRF
NRMPFGLTNAPATFQRAVDILLAHYKWKTCLVYLDDIIVFSSDLYEHLTH
VPDVMRVLRDAGITLKLGKCEFFTDTVKYLGHIIRPERLSVDAARVEFLK
QAKHSRTQTELRSFLGLCNVYRRFIPRFADIAAPLNELLRKDRPVKLEAF
DDQQASAFTSLIEAVTSPPILTLPKAGLSYAVDTDASNF*

mRNA from alignment at ScGOVlb_64:2368028..2369347+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7684.t1 ID=Gvermi7684.t1|Name=Gvermi7684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at ScGOVlb_64:2368028..2369347+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggaagctggaagaccgaagatatcggatgtcgaaactgcaagaccgaa
gatatcggacgcacgaagtgatggaccgatgacttcggatgttagaagta
tggacccaaagcttttgacgggagaagcagggccgtcaccgtcgggaacg
gatgttccgaactcgtcgggagacgccacggcgacctcgtcggaagatag
gccagaatcccctggggatgatctgaaagatcctgtacaggaactggagc
aattggacctgagccatgtgccaggaacgcaccgtgaccgtttacggcat
atgcttcgtgagtttacgcccatgtgggacgggtcccttgggaaaatcgc
ggttgccgaacatcggattgatctacttccgaatactcgaccaattgcgc
aacccccttacagggcaggaacgacagctcgggaagaagaaaaggctcaa
cttgagaagatgctccgggccggagtcattgagcctgctcaatcgccatg
ggcttcgcccgtggtcctggcgcccaagcctgatgggtcctggcgattct
gtatcgactaccgcaagttggacgcggcgaccgtgaaggacgtttatcct
atcccacggatggacgaatgcatcgatttgttgggaaaggccaagatgtt
caccaccctggacaccaattggggatattggcaggtgcccgttcgggaag
aggaccgtgataaaacggctttcgtttgccatcaggggctgtaccgattc
aatcggatgccttttggtctcacaaacgcgcccgccacgttccaacgagc
agtggacatattgctagcccactacaagtggaaaacttgcctagtctacc
tggacgacatcattgtcttctccagtgacctgtacgagcacctgacccat
gtaccggacgtgatgcgagtcctgcgggatgcaggcataaccctcaagtt
gggcaaatgcgagttctttaccgatacggtcaaatacctcggtcatatta
tccgtccggaacggctgtcggtcgatgccgctcgtgtggagttcttgaaa
caggctaagcattcgcgcactcaaacggaactccgatcatttctcggtct
gtgcaatgtgtatcgccgcttcataccgcggtttgcggacatcgccgcac
cgttgaatgaactcctacggaaagatcggccagtgaaactggaagcgttc
gacgaccaacaagcatcggcattcacctcgctgattgaggccgtaacgtc
gccgccgatactgaccctgccgaaagctgggctctcgtatgccgttgaca
cggacgcgagcaacttctag

Coding sequence (CDS) from alignment at ScGOVlb_64:2368028..2369347+

>Gvermi7684.t1 ID=Gvermi7684.t1|Name=Gvermi7684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1320bp|location=Sequence derived from alignment at ScGOVlb_64:2368028..2369347+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggaagctggaagaccgaagatatcggatgtcgaaactgcaagaccgaa
gatatcggacgcacgaagtgatggaccgatgacttcggatgttagaagta
tggacccaaagcttttgacgggagaagcagggccgtcaccgtcgggaacg
gatgttccgaactcgtcgggagacgccacggcgacctcgtcggaagatag
gccagaatcccctggggatgatctgaaagatcctgtacaggaactggagc
aattggacctgagccatgtgccaggaacgcaccgtgaccgtttacggcat
atgcttcgtgagtttacgcccatgtgggacgggtcccttgggaaaatcgc
ggttgccgaacatcggattgatctacttccgaatactcgaccaattgcgc
aacccccttacagggcaggaacgacagctcgggaagaagaaaaggctcaa
cttgagaagatgctccgggccggagtcattgagcctgctcaatcgccatg
ggcttcgcccgtggtcctggcgcccaagcctgatgggtcctggcgattct
gtatcgactaccgcaagttggacgcggcgaccgtgaaggacgtttatcct
atcccacggatggacgaatgcatcgatttgttgggaaaggccaagatgtt
caccaccctggacaccaattggggatattggcaggtgcccgttcgggaag
aggaccgtgataaaacggctttcgtttgccatcaggggctgtaccgattc
aatcggatgccttttggtctcacaaacgcgcccgccacgttccaacgagc
agtggacatattgctagcccactacaagtggaaaacttgcctagtctacc
tggacgacatcattgtcttctccagtgacctgtacgagcacctgacccat
gtaccggacgtgatgcgagtcctgcgggatgcaggcataaccctcaagtt
gggcaaatgcgagttctttaccgatacggtcaaatacctcggtcatatta
tccgtccggaacggctgtcggtcgatgccgctcgtgtggagttcttgaaa
caggctaagcattcgcgcactcaaacggaactccgatcatttctcggtct
gtgcaatgtgtatcgccgcttcataccgcggtttgcggacatcgccgcac
cgttgaatgaactcctacggaaagatcggccagtgaaactggaagcgttc
gacgaccaacaagcatcggcattcacctcgctgattgaggccgtaacgtc
gccgccgatactgaccctgccgaaagctgggctctcgtatgccgttgaca
cggacgcgagcaacttctag