Gvermi7691.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7691.t1
Unique Name	Gvermi7691.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	728

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:2492302..2494595 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr47656
PFAMs	SNF
Max annot lvl	2836\|Bacillariophyta
KEGG ko	ko:K05034
KEGG TC	2.A.22.3.2
KEGG Pathway	ko04727,map04727
Evalue	1.41e-169
EggNOG OGs	COG0733@1\|root,KOG3660@2759\|Eukaryota,2XEEH@2836\|Bacillariophyta
Description	Sodium:neurotransmitter symporter family
COG category	T
BRITE	ko00000,ko00001,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7691	Gvermi7691	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 2492302..2494595 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7691.t1	Gvermi7691.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 2492302..2494595 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7691.t1.start1	Gvermi7691.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 2492302..2492304 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7691.t1.CDS1	Gvermi7691.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 2492302..2494281 +
Gvermi7691.t1.CDS2	Gvermi7691.t1.CDS2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 2494392..2494595 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7691.t1.exon1	Gvermi7691.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 2492302..2494281 +
Gvermi7691.t1.exon2	Gvermi7691.t1.exon2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 2494392..2494595 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7691.t1.intron1	Gvermi7691.t1.intron1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	intron	ScGOVlb_64 2494282..2494391 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7691.t1.stop1	Gvermi7691.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 2494593..2494595 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:2492302..2494595+
coding sequence from alignment at ScGOVlb_64:2492302..2494595+

mRNA sequence

>Gvermi7691.t1 ID=Gvermi7691.t1|Name=Gvermi7691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=728bp
MSFLASHNCRARLSNLQLEPGSHGQLYFFDYHNHLFSTRTMAHERGFWSS
RVAFIVASVGAAIGFGNVWRFPNLAYKFGGGAFFVPYLLALFIIGIPVLI
LEVAVGQFYQTGDAGAFGKVHPRFRGVGLASILAAFVVTTYYCVLLAWTL
RMFVYSCQGSDGRWRGRTGTDAFEWFKGVVTGLESVGKNFAPTRLVGPNV
GALAVTWVFIFLCLAFGVKWTGRIAFITVGLPIAILVVLLVRALTLEGSG
DGVKAYIGKWDFSVLSNEPEVWSEAVSQVFFSLSVTFGIMTAYASYNQRN
SPVFSNCIIIAISNSTYSIIAGFAVFGTVGYIANIEQKKIDQLENIAGPG
LIFGAFPVALSTLPGHGHWERLFFVALFLLGIDSAFALAEGVTTVFRDSA
LLRKYHHAYITAGVCLVGFLGGLLFCTDSGLLFLDVADFYVNFLMILVGF
MECFAIGWIYGIQSQIKLLGWKPVVMYMAATFGSLSLACGFWFGANERQI
MKGFLSLAVSYFLLMICVLYLCYRVKTSSTKQLSWRVVLIELLFGNVLQL
RRDFVNIVRYIPLLWFVMIRHILPQVLLVLFANLASADDKIGDKIRRRFA
NYNGLPAGYQALGLTVVLSACVVIIIGALLPELYSCFDMSGVIQEEALND
VVNNMSNDEKRIFAIVIDPFRETREISISETFVAFWKNQENTKNKQHNRT
FSMLHNAVFYQRKQSTILVETSPTAYH*

spliced messenger RNA

>Gvermi7691.t1 ID=Gvermi7691.t1|Name=Gvermi7691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2184bp|location=Sequence derived from alignment at ScGOVlb_64:2492302..2494595+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTCCTCGCGAGCCATAATTGCCGCGCCCGCCTGTCCAACCTTCA
ATTAGAACCCGGCTCCCATGGCCAACTTTACTTTTTCGACTACCACAATC
ATCTCTTCAGTACTCGCACTATGGCCCATGAACGAGGATTCTGGTCTTCG
CGCGTCGCGTTTATTGTTGCCTCTGTGGGTGCCGCCATAGGTTTTGGCAA
CGTCTGGCGCTTTCCCAACCTCGCGTACAAGTTCGGTGGCGGCGCCTTTT
TCGTCCCATATCTGCTGGCACTTTTCATTATCGGTATCCCAGTGCTCATT
CTCGAGGTTGCCGTGGGCCAATTCTATCAGACTGGAGATGCCGGCGCCTT
CGGCAAGGTGCATCCACGCTTCCGCGGAGTGGGGCTTGCATCCATTCTGG
CTGCGTTCGTAGTGACTACTTATTACTGCGTCCTCCTTGCGTGGACGTTA
CGCATGTTTGTGTACAGCTGTCAAGGATCGGACGGTCGATGGAGGGGTCG
CACTGGAACAGATGCATTTGAATGGTTTAAAGGCGTAGTTACCGGTTTAG
AGTCGGTGGGCAAAAACTTCGCACCAACTCGTCTTGTGGGGCCCAACGTC
GGTGCACTAGCTGTGACATGGGTATTCATTTTTCTATGTCTCGCATTTGG
TGTCAAGTGGACAGGTCGAATAGCTTTCATTACCGTGGGACTTCCCATCG
CTATCTTGGTTGTGTTGCTGGTTCGCGCGCTCACACTTGAGGGGAGCGGA
GATGGCGTCAAAGCATATATCGGCAAGTGGGACTTTTCAGTGCTGTCAAA
TGAACCTGAGGTATGGTCGGAAGCTGTTTCTCAAGTCTTCTTTTCATTAT
CAGTAACGTTTGGCATCATGACAGCGTATGCATCTTATAATCAACGAAAT
TCTCCCGTTTTTTCCAACTGTATCATCATTGCCATATCCAACTCTACATA
CTCCATCATCGCTGGCTTTGCAGTGTTTGGAACCGTAGGATACATTGCAA
ACATAGAACAGAAAAAAATTGATCAGCTGGAAAACATTGCCGGGCCGGGT
TTGATCTTTGGAGCGTTTCCTGTAGCGCTTTCAACGCTTCCAGGTCATGG
ACACTGGGAAAGACTGTTTTTCGTCGCTTTGTTTCTTCTTGGCATCGACT
CAGCGTTTGCGCTAGCTGAAGGAGTAACCACGGTTTTCCGTGACTCAGCT
CTCCTTCGAAAATATCATCATGCGTACATAACGGCAGGAGTTTGTCTTGT
AGGGTTCTTAGGTGGACTGTTGTTCTGCACGGATTCTGGTTTGCTTTTCC
TCGATGTTGCCGACTTTTACGTCAATTTCTTGATGATCTTGGTGGGTTTC
ATGGAATGTTTTGCAATCGGATGGATATATGGCATCCAGTCACAGATCAA
ACTGCTCGGATGGAAGCCTGTTGTGATGTACATGGCAGCAACATTTGGAT
CACTGAGCTTGGCATGTGGCTTTTGGTTTGGCGCTAATGAACGACAGATC
ATGAAAGGATTTTTGTCGTTGGCAGTCAGCTATTTCCTTCTTATGATATG
TGTACTCTATCTATGCTACCGCGTGAAAACGAGCAGTACCAAGCAGTTAT
CTTGGCGCGTAGTTCTGATCGAGCTTCTCTTCGGAAATGTGCTGCAGCTT
CGAAGGGATTTCGTGAACATTGTGCGTTACATTCCGCTGCTGTGGTTTGT
CATGATTCGACACATTCTGCCACAAGTACTGTTGGTACTGTTTGCAAACT
TAGCCTCGGCAGACGACAAGATTGGCGACAAAATTAGACGAAGGTTTGCA
AACTACAACGGTCTGCCCGCTGGATATCAGGCACTAGGGCTTACAGTGGT
TCTCTCTGCATGTGTTGTAATCATCATTGGCGCTTTGCTGCCTGAACTTT
ATTCCTGTTTTGATATGTCCGGGGTGATACAAGAAGAGGCATTGAATGAT
GTGGTCAATAATATGTCTAACGACGAAAAAAGGATATTTGCGATAGTTAT
CGACCCATTCAGGGAGACGCGGGAAATATCAATATCTGAAACGTTTGTTG
CCTTTTGGAAAAACCAGGAAAATACCAAAAACAAGCAACACAACAGAACG
TTTTCCATGTTGCACAATGCCGTGTTCTATCAAAGAAAACAGTCTACAAT
TCTCGTAGAAACATCGCCAACCGCATATCACTAA

protein sequence of Gvermi7691.t1

>Gvermi7691.t1 ID=Gvermi7691.t1|Name=Gvermi7691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=728bp
MSFLASHNCRARLSNLQLEPGSHGQLYFFDYHNHLFSTRTMAHERGFWSS
RVAFIVASVGAAIGFGNVWRFPNLAYKFGGGAFFVPYLLALFIIGIPVLI
LEVAVGQFYQTGDAGAFGKVHPRFRGVGLASILAAFVVTTYYCVLLAWTL
RMFVYSCQGSDGRWRGRTGTDAFEWFKGVVTGLESVGKNFAPTRLVGPNV
GALAVTWVFIFLCLAFGVKWTGRIAFITVGLPIAILVVLLVRALTLEGSG
DGVKAYIGKWDFSVLSNEPEVWSEAVSQVFFSLSVTFGIMTAYASYNQRN
SPVFSNCIIIAISNSTYSIIAGFAVFGTVGYIANIEQKKIDQLENIAGPG
LIFGAFPVALSTLPGHGHWERLFFVALFLLGIDSAFALAEGVTTVFRDSA
LLRKYHHAYITAGVCLVGFLGGLLFCTDSGLLFLDVADFYVNFLMILVGF
MECFAIGWIYGIQSQIKLLGWKPVVMYMAATFGSLSLACGFWFGANERQI
MKGFLSLAVSYFLLMICVLYLCYRVKTSSTKQLSWRVVLIELLFGNVLQL
RRDFVNIVRYIPLLWFVMIRHILPQVLLVLFANLASADDKIGDKIRRRFA
NYNGLPAGYQALGLTVVLSACVVIIIGALLPELYSCFDMSGVIQEEALND
VVNNMSNDEKRIFAIVIDPFRETREISISETFVAFWKNQENTKNKQHNRT
FSMLHNAVFYQRKQSTILVETSPTAYH*

mRNA from alignment at ScGOVlb_64:2492302..2494595+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7691.t1 ID=Gvermi7691.t1|Name=Gvermi7691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2294bp|location=Sequence derived from alignment at ScGOVlb_64:2492302..2494595+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTTCCTCGCGAGCCATAATTGCCGCGCCCGCCTGTCCAACCTTCA
ATTAGAACCCGGCTCCCATGGCCAACTTTACTTTTTCGACTACCACAATC
ATCTCTTCAGTACTCGCACTATGGCCCATGAACGAGGATTCTGGTCTTCG
CGCGTCGCGTTTATTGTTGCCTCTGTGGGTGCCGCCATAGGTTTTGGCAA
CGTCTGGCGCTTTCCCAACCTCGCGTACAAGTTCGGTGGCGGCGCCTTTT
TCGTCCCATATCTGCTGGCACTTTTCATTATCGGTATCCCAGTGCTCATT
CTCGAGGTTGCCGTGGGCCAATTCTATCAGACTGGAGATGCCGGCGCCTT
CGGCAAGGTGCATCCACGCTTCCGCGGAGTGGGGCTTGCATCCATTCTGG
CTGCGTTCGTAGTGACTACTTATTACTGCGTCCTCCTTGCGTGGACGTTA
CGCATGTTTGTGTACAGCTGTCAAGGATCGGACGGTCGATGGAGGGGTCG
CACTGGAACAGATGCATTTGAATGGTTTAAAGGCGTAGTTACCGGTTTAG
AGTCGGTGGGCAAAAACTTCGCACCAACTCGTCTTGTGGGGCCCAACGTC
GGTGCACTAGCTGTGACATGGGTATTCATTTTTCTATGTCTCGCATTTGG
TGTCAAGTGGACAGGTCGAATAGCTTTCATTACCGTGGGACTTCCCATCG
CTATCTTGGTTGTGTTGCTGGTTCGCGCGCTCACACTTGAGGGGAGCGGA
GATGGCGTCAAAGCATATATCGGCAAGTGGGACTTTTCAGTGCTGTCAAA
TGAACCTGAGGTATGGTCGGAAGCTGTTTCTCAAGTCTTCTTTTCATTAT
CAGTAACGTTTGGCATCATGACAGCGTATGCATCTTATAATCAACGAAAT
TCTCCCGTTTTTTCCAACTGTATCATCATTGCCATATCCAACTCTACATA
CTCCATCATCGCTGGCTTTGCAGTGTTTGGAACCGTAGGATACATTGCAA
ACATAGAACAGAAAAAAATTGATCAGCTGGAAAACATTGCCGGGCCGGGT
TTGATCTTTGGAGCGTTTCCTGTAGCGCTTTCAACGCTTCCAGGTCATGG
ACACTGGGAAAGACTGTTTTTCGTCGCTTTGTTTCTTCTTGGCATCGACT
CAGCGTTTGCGCTAGCTGAAGGAGTAACCACGGTTTTCCGTGACTCAGCT
CTCCTTCGAAAATATCATCATGCGTACATAACGGCAGGAGTTTGTCTTGT
AGGGTTCTTAGGTGGACTGTTGTTCTGCACGGATTCTGGTTTGCTTTTCC
TCGATGTTGCCGACTTTTACGTCAATTTCTTGATGATCTTGGTGGGTTTC
ATGGAATGTTTTGCAATCGGATGGATATATGGCATCCAGTCACAGATCAA
ACTGCTCGGATGGAAGCCTGTTGTGATGTACATGGCAGCAACATTTGGAT
CACTGAGCTTGGCATGTGGCTTTTGGTTTGGCGCTAATGAACGACAGATC
ATGAAAGGATTTTTGTCGTTGGCAGTCAGCTATTTCCTTCTTATGATATG
TGTACTCTATCTATGCTACCGCGTGAAAACGAGCAGTACCAAGCAGTTAT
CTTGGCGCGTAGTTCTGATCGAGCTTCTCTTCGGAAATGTGCTGCAGCTT
CGAAGGGATTTCGTGAACATTGTGCGTTACATTCCGCTGCTGTGGTTTGT
CATGATTCGACACATTCTGCCACAAGTACTGTTGGTACTGTTTGCAAACT
TAGCCTCGGCAGACGACAAGATTGGCGACAAAATTAGACGAAGGTTTGCA
AACTACAACGGTCTGCCCGCTGGATATCAGGCACTAGGGCTTACAGTGGT
TCTCTCTGCATGTGTTGTAATCATCATTGGCGCTTTGCTGCCTGAACTTT
ATTCCTGTTTTGATATGTCCGGGGTGATACAAGAAGAGGCATTGAATGAT
GTGGTCAATAATATGTCTAACGACGAAAAAGTACAGCAAGAAGAAGAGTG
CAAAGTTTCACAGGAAGTATGAGTATGGTTATGACACTGACTTTTCGTCT
TATTGTGGAGTAATTTTTTTCAATTGTTTCGCTGCAAAAGAGGATATTTG
CGATAGTTATCGACCCATTCAGGGAGACGCGGGAAATATCAATATCTGAA
ACGTTTGTTGCCTTTTGGAAAAACCAGGAAAATACCAAAAACAAGCAACA
CAACAGAACGTTTTCCATGTTGCACAATGCCGTGTTCTATCAAAGAAAAC
AGTCTACAATTCTCGTAGAAACATCGCCAACCGCATATCACTAA

Coding sequence (CDS) from alignment at ScGOVlb_64:2492302..2494595+

>Gvermi7691.t1 ID=Gvermi7691.t1|Name=Gvermi7691.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2184bp|location=Sequence derived from alignment at ScGOVlb_64:2492302..2494595+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTTCCTCGCGAGCCATAATTGCCGCGCCCGCCTGTCCAACCTTCA
ATTAGAACCCGGCTCCCATGGCCAACTTTACTTTTTCGACTACCACAATC
ATCTCTTCAGTACTCGCACTATGGCCCATGAACGAGGATTCTGGTCTTCG
CGCGTCGCGTTTATTGTTGCCTCTGTGGGTGCCGCCATAGGTTTTGGCAA
CGTCTGGCGCTTTCCCAACCTCGCGTACAAGTTCGGTGGCGGCGCCTTTT
TCGTCCCATATCTGCTGGCACTTTTCATTATCGGTATCCCAGTGCTCATT
CTCGAGGTTGCCGTGGGCCAATTCTATCAGACTGGAGATGCCGGCGCCTT
CGGCAAGGTGCATCCACGCTTCCGCGGAGTGGGGCTTGCATCCATTCTGG
CTGCGTTCGTAGTGACTACTTATTACTGCGTCCTCCTTGCGTGGACGTTA
CGCATGTTTGTGTACAGCTGTCAAGGATCGGACGGTCGATGGAGGGGTCG
CACTGGAACAGATGCATTTGAATGGTTTAAAGGCGTAGTTACCGGTTTAG
AGTCGGTGGGCAAAAACTTCGCACCAACTCGTCTTGTGGGGCCCAACGTC
GGTGCACTAGCTGTGACATGGGTATTCATTTTTCTATGTCTCGCATTTGG
TGTCAAGTGGACAGGTCGAATAGCTTTCATTACCGTGGGACTTCCCATCG
CTATCTTGGTTGTGTTGCTGGTTCGCGCGCTCACACTTGAGGGGAGCGGA
GATGGCGTCAAAGCATATATCGGCAAGTGGGACTTTTCAGTGCTGTCAAA
TGAACCTGAGGTATGGTCGGAAGCTGTTTCTCAAGTCTTCTTTTCATTAT
CAGTAACGTTTGGCATCATGACAGCGTATGCATCTTATAATCAACGAAAT
TCTCCCGTTTTTTCCAACTGTATCATCATTGCCATATCCAACTCTACATA
CTCCATCATCGCTGGCTTTGCAGTGTTTGGAACCGTAGGATACATTGCAA
ACATAGAACAGAAAAAAATTGATCAGCTGGAAAACATTGCCGGGCCGGGT
TTGATCTTTGGAGCGTTTCCTGTAGCGCTTTCAACGCTTCCAGGTCATGG
ACACTGGGAAAGACTGTTTTTCGTCGCTTTGTTTCTTCTTGGCATCGACT
CAGCGTTTGCGCTAGCTGAAGGAGTAACCACGGTTTTCCGTGACTCAGCT
CTCCTTCGAAAATATCATCATGCGTACATAACGGCAGGAGTTTGTCTTGT
AGGGTTCTTAGGTGGACTGTTGTTCTGCACGGATTCTGGTTTGCTTTTCC
TCGATGTTGCCGACTTTTACGTCAATTTCTTGATGATCTTGGTGGGTTTC
ATGGAATGTTTTGCAATCGGATGGATATATGGCATCCAGTCACAGATCAA
ACTGCTCGGATGGAAGCCTGTTGTGATGTACATGGCAGCAACATTTGGAT
CACTGAGCTTGGCATGTGGCTTTTGGTTTGGCGCTAATGAACGACAGATC
ATGAAAGGATTTTTGTCGTTGGCAGTCAGCTATTTCCTTCTTATGATATG
TGTACTCTATCTATGCTACCGCGTGAAAACGAGCAGTACCAAGCAGTTAT
CTTGGCGCGTAGTTCTGATCGAGCTTCTCTTCGGAAATGTGCTGCAGCTT
CGAAGGGATTTCGTGAACATTGTGCGTTACATTCCGCTGCTGTGGTTTGT
CATGATTCGACACATTCTGCCACAAGTACTGTTGGTACTGTTTGCAAACT
TAGCCTCGGCAGACGACAAGATTGGCGACAAAATTAGACGAAGGTTTGCA
AACTACAACGGTCTGCCCGCTGGATATCAGGCACTAGGGCTTACAGTGGT
TCTCTCTGCATGTGTTGTAATCATCATTGGCGCTTTGCTGCCTGAACTTT
ATTCCTGTTTTGATATGTCCGGGGTGATACAAGAAGAGGCATTGAATGAT
GTGGTCAATAATATGTCTAACGACGAAAAAAGGATATTTGCGATAGTTAT
CGACCCATTCAGGGAGACGCGGGAAATATCAATATCTGAAACGTTTGTTG
CCTTTTGGAAAAACCAGGAAAATACCAAAAACAAGCAACACAACAGAACG
TTTTCCATGTTGCACAATGCCGTGTTCTATCAAAGAAAACAGTCTACAAT
TCTCGTAGAAACATCGCCAACCGCATATCACTAA