Gvermi7703.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7703.t1
Unique NameGvermi7703.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2810894..2811577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002601947.1
PFAMsSRCR,VWA
Max annot lvl33208|Metazoa
KEGG koko:K13912
KEGG Pathwayko04970,map04970
Evalue7.56e-07
EggNOG OGsKOG2579@1|root,KOG3544@1|root,KOG2579@2759|Eukaryota,KOG3544@2759|Eukaryota,39NMG@33154|Opisthokonta,3CQ5T@33208|Metazoa,3E6B0@33213|Bilateria,48RRQ@7711|Chordata
DescriptionScavenger receptor Cys-rich
COG categoryW
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7703Gvermi7703Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2810894..2811577 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7703.t1.stop1Gvermi7703.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2810894..2810896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7703.t1.CDS1Gvermi7703.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2810894..2811577 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7703.t1.exon1Gvermi7703.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2810894..2811577 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7703.t1.start1Gvermi7703.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2811575..2811577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7703.t1Gvermi7703.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2810894..2811577 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7703.t1 ID=Gvermi7703.t1|Name=Gvermi7703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=228bp
MKLSTLFSATVFLGCLCNVLTASATVHSTDSAPTTVRNEVRNSQCAVNVC
FAIDGSGSVSDSEFGLQKDFVLDVASILSGIRNASFSAVQYGAQRYPISA
QTEDHEQFLRAVQNTLFRKDGRTVIAGGIEYCFFELLLAPRGVAKIVMIG
DGRHNHGPDPLESVKKFRQFFGPQGSLSWVNIGFGDVQFSSEMAAAGGGE
VFEIHDYVDLSIVIDELVYDICGSSGF*
back to top

spliced messenger RNA

>Gvermi7703.t1 ID=Gvermi7703.t1|Name=Gvermi7703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=684bp|location=Sequence derived from alignment at ScGOVlb_64:2810894..2811577- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATTGAGTACTTTGTTCTCGGCAACCGTGTTCTTAGGATGCCTATG
CAATGTGCTCACAGCGTCGGCTACGGTTCACAGCACAGACTCCGCTCCCA
CAACGGTTCGAAATGAAGTCCGCAACAGCCAGTGCGCTGTCAATGTTTGC
TTTGCCATTGATGGAAGTGGCTCGGTGAGTGACTCTGAATTTGGCCTCCA
GAAAGATTTCGTGCTTGATGTCGCATCTATTTTATCAGGCATTCGCAATG
CTTCTTTCTCCGCTGTACAGTATGGTGCGCAACGCTATCCAATCTCTGCT
CAAACTGAAGATCACGAACAGTTTCTTAGGGCAGTTCAAAACACGTTATT
CCGGAAAGATGGCCGCACGGTCATTGCCGGCGGTATCGAATACTGTTTCT
TTGAGCTGCTTCTCGCACCCAGAGGGGTGGCGAAGATTGTAATGATTGGC
GACGGGCGCCACAACCATGGGCCCGATCCCCTGGAGTCTGTTAAGAAATT
CAGGCAGTTCTTTGGGCCTCAGGGCTCATTGAGCTGGGTGAATATTGGAT
TCGGCGACGTCCAATTCAGTTCTGAAATGGCAGCCGCTGGCGGAGGAGAA
GTGTTTGAAATTCATGATTATGTAGACCTTTCTATTGTCATTGACGAGCT
TGTTTATGATATTTGTGGTTCGTCTGGTTTTTAA
back to top

protein sequence of Gvermi7703.t1

>Gvermi7703.t1 ID=Gvermi7703.t1|Name=Gvermi7703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=228bp
MKLSTLFSATVFLGCLCNVLTASATVHSTDSAPTTVRNEVRNSQCAVNVC
FAIDGSGSVSDSEFGLQKDFVLDVASILSGIRNASFSAVQYGAQRYPISA
QTEDHEQFLRAVQNTLFRKDGRTVIAGGIEYCFFELLLAPRGVAKIVMIG
DGRHNHGPDPLESVKKFRQFFGPQGSLSWVNIGFGDVQFSSEMAAAGGGE
VFEIHDYVDLSIVIDELVYDICGSSGF*
back to top

mRNA from alignment at ScGOVlb_64:2810894..2811577-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7703.t1 ID=Gvermi7703.t1|Name=Gvermi7703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=684bp|location=Sequence derived from alignment at ScGOVlb_64:2810894..2811577- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATTGAGTACTTTGTTCTCGGCAACCGTGTTCTTAGGATGCCTATG
CAATGTGCTCACAGCGTCGGCTACGGTTCACAGCACAGACTCCGCTCCCA
CAACGGTTCGAAATGAAGTCCGCAACAGCCAGTGCGCTGTCAATGTTTGC
TTTGCCATTGATGGAAGTGGCTCGGTGAGTGACTCTGAATTTGGCCTCCA
GAAAGATTTCGTGCTTGATGTCGCATCTATTTTATCAGGCATTCGCAATG
CTTCTTTCTCCGCTGTACAGTATGGTGCGCAACGCTATCCAATCTCTGCT
CAAACTGAAGATCACGAACAGTTTCTTAGGGCAGTTCAAAACACGTTATT
CCGGAAAGATGGCCGCACGGTCATTGCCGGCGGTATCGAATACTGTTTCT
TTGAGCTGCTTCTCGCACCCAGAGGGGTGGCGAAGATTGTAATGATTGGC
GACGGGCGCCACAACCATGGGCCCGATCCCCTGGAGTCTGTTAAGAAATT
CAGGCAGTTCTTTGGGCCTCAGGGCTCATTGAGCTGGGTGAATATTGGAT
TCGGCGACGTCCAATTCAGTTCTGAAATGGCAGCCGCTGGCGGAGGAGAA
GTGTTTGAAATTCATGATTATGTAGACCTTTCTATTGTCATTGACGAGCT
TGTTTATGATATTTGTGGTTCGTCTGGTTTTTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_64:2810894..2811577-

>Gvermi7703.t1 ID=Gvermi7703.t1|Name=Gvermi7703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=684bp|location=Sequence derived from alignment at ScGOVlb_64:2810894..2811577- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATTGAGTACTTTGTTCTCGGCAACCGTGTTCTTAGGATGCCTATG
CAATGTGCTCACAGCGTCGGCTACGGTTCACAGCACAGACTCCGCTCCCA
CAACGGTTCGAAATGAAGTCCGCAACAGCCAGTGCGCTGTCAATGTTTGC
TTTGCCATTGATGGAAGTGGCTCGGTGAGTGACTCTGAATTTGGCCTCCA
GAAAGATTTCGTGCTTGATGTCGCATCTATTTTATCAGGCATTCGCAATG
CTTCTTTCTCCGCTGTACAGTATGGTGCGCAACGCTATCCAATCTCTGCT
CAAACTGAAGATCACGAACAGTTTCTTAGGGCAGTTCAAAACACGTTATT
CCGGAAAGATGGCCGCACGGTCATTGCCGGCGGTATCGAATACTGTTTCT
TTGAGCTGCTTCTCGCACCCAGAGGGGTGGCGAAGATTGTAATGATTGGC
GACGGGCGCCACAACCATGGGCCCGATCCCCTGGAGTCTGTTAAGAAATT
CAGGCAGTTCTTTGGGCCTCAGGGCTCATTGAGCTGGGTGAATATTGGAT
TCGGCGACGTCCAATTCAGTTCTGAAATGGCAGCCGCTGGCGGAGGAGAA
GTGTTTGAAATTCATGATTATGTAGACCTTTCTATTGTCATTGACGAGCT
TGTTTATGATATTTGTGGTTCGTCTGGTTTTTAA
back to top