Gvermi7707.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7707.t1
Unique Name	Gvermi7707.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	247

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:2850153..2850893 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002946011.1
PFAMs	Peptidase_C1
Max annot lvl	2759\|Eukaryota
Evalue	6.85e-25
EggNOG OGs	COG4870@1\|root,2S8PN@2759\|Eukaryota
Description	Belongs to the peptidase C1 family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7707	Gvermi7707	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 2850153..2850893 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7707.t1.start1	Gvermi7707.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 2850153..2850155 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7707.t1.CDS1	Gvermi7707.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 2850153..2850893 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7707.t1.exon1	Gvermi7707.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 2850153..2850893 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7707.t1.stop1	Gvermi7707.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 2850891..2850893 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7707.t1	Gvermi7707.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 2850153..2850893 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:2850153..2850893+
coding sequence from alignment at ScGOVlb_64:2850153..2850893+

mRNA sequence

>Gvermi7707.t1 ID=Gvermi7707.t1|Name=Gvermi7707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=247bp
MFFTKFMLSLPFMCIIKLAFASVIENHNSVIDIPAFDIQEATLRIPLARQ
QQEEVVFAVNSSSTGFARTTSAGITVQRGTSGVLTFSFKIEAVEAETLAT
LDQEFSSSLSVSEREEYRRLREDYRSGFGIPFLSWLGINLNNRRVTREDM
ERTFELREDYNTQSRIAEQIISNVQVQELQISGELTAFGTSFIPTTVFAF
VRIARIQTQDGMTLTVVSQSGDNLVAADAGGNTVPSSGGDINIITL*

spliced messenger RNA

>Gvermi7707.t1 ID=Gvermi7707.t1|Name=Gvermi7707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=741bp|location=Sequence derived from alignment at ScGOVlb_64:2850153..2850893+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTTCACGAAGTTTATGCTCAGCCTGCCGTTCATGTGCATCATCAA
GCTTGCTTTCGCATCTGTGATTGAGAATCATAActccgtcattgatatcc
cagctttcgacatccaagaggctactctgcgtattcctttggctcgccag
cagcaagaagaagttgtgtttgccgtcaacagctccagcaccggatttgc
gcggacaacgtcagccggaataacggtgcagcggggcacgagtggtgtac
ttactttttcttttaagattgaagcagtcgaggctgagactttggctact
cttgatcaagagttttccagttcactgtctgtgtctgaaagggaagaata
ccgtcgacttcgtgaggattatcgaagcggatttggaattcctttcctgt
cgtggctcgggatcaatctgaacaaccgccgagtcactcgcgaggacatg
gagagaaccttcgagcttcgcgaagattataatacgcaatcgcgcattgc
cgaacagattatctccaatgtacaagtccaggaactacagatctcaggtg
aacttactgcttttggcactagtttcatacccaccacggtttttgcgttt
gttcgcattgcgcgcattcaaactcaggatggcatgacgcttactgtcgt
gtcccagagcggagataatttggttgcggcggacgccggtggcaacactg
tgccgtcttctggaggcgacatcaacattattacactttga

protein sequence of Gvermi7707.t1

>Gvermi7707.t1 ID=Gvermi7707.t1|Name=Gvermi7707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=247bp
MFFTKFMLSLPFMCIIKLAFASVIENHNSVIDIPAFDIQEATLRIPLARQ
QQEEVVFAVNSSSTGFARTTSAGITVQRGTSGVLTFSFKIEAVEAETLAT
LDQEFSSSLSVSEREEYRRLREDYRSGFGIPFLSWLGINLNNRRVTREDM
ERTFELREDYNTQSRIAEQIISNVQVQELQISGELTAFGTSFIPTTVFAF
VRIARIQTQDGMTLTVVSQSGDNLVAADAGGNTVPSSGGDINIITL*

mRNA from alignment at ScGOVlb_64:2850153..2850893+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7707.t1 ID=Gvermi7707.t1|Name=Gvermi7707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=741bp|location=Sequence derived from alignment at ScGOVlb_64:2850153..2850893+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTTCACGAAGTTTATGCTCAGCCTGCCGTTCATGTGCATCATCAA
GCTTGCTTTCGCATCTGTGATTGAGAATCATAActccgtcattgatatcc
cagctttcgacatccaagaggctactctgcgtattcctttggctcgccag
cagcaagaagaagttgtgtttgccgtcaacagctccagcaccggatttgc
gcggacaacgtcagccggaataacggtgcagcggggcacgagtggtgtac
ttactttttcttttaagattgaagcagtcgaggctgagactttggctact
cttgatcaagagttttccagttcactgtctgtgtctgaaagggaagaata
ccgtcgacttcgtgaggattatcgaagcggatttggaattcctttcctgt
cgtggctcgggatcaatctgaacaaccgccgagtcactcgcgaggacatg
gagagaaccttcgagcttcgcgaagattataatacgcaatcgcgcattgc
cgaacagattatctccaatgtacaagtccaggaactacagatctcaggtg
aacttactgcttttggcactagtttcatacccaccacggtttttgcgttt
gttcgcattgcgcgcattcaaactcaggatggcatgacgcttactgtcgt
gtcccagagcggagataatttggttgcggcggacgccggtggcaacactg
tgccgtcttctggaggcgacatcaacattattacactttga

Coding sequence (CDS) from alignment at ScGOVlb_64:2850153..2850893+

>Gvermi7707.t1 ID=Gvermi7707.t1|Name=Gvermi7707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=741bp|location=Sequence derived from alignment at ScGOVlb_64:2850153..2850893+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTTCACGAAGTTTATGCTCAGCCTGCCGTTCATGTGCATCATCAA
GCTTGCTTTCGCATCTGTGATTGAGAATCATAActccgtcattgatatcc
cagctttcgacatccaagaggctactctgcgtattcctttggctcgccag
cagcaagaagaagttgtgtttgccgtcaacagctccagcaccggatttgc
gcggacaacgtcagccggaataacggtgcagcggggcacgagtggtgtac
ttactttttcttttaagattgaagcagtcgaggctgagactttggctact
cttgatcaagagttttccagttcactgtctgtgtctgaaagggaagaata
ccgtcgacttcgtgaggattatcgaagcggatttggaattcctttcctgt
cgtggctcgggatcaatctgaacaaccgccgagtcactcgcgaggacatg
gagagaaccttcgagcttcgcgaagattataatacgcaatcgcgcattgc
cgaacagattatctccaatgtacaagtccaggaactacagatctcaggtg
aacttactgcttttggcactagtttcatacccaccacggtttttgcgttt
gttcgcattgcgcgcattcaaactcaggatggcatgacgcttactgtcgt
gtcccagagcggagataatttggttgcggcggacgccggtggcaacactg
tgccgtcttctggaggcgacatcaacattattacactttga