Gvermi7639.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7639.t1
Unique NameGvermi7639.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1149257..1149718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128421.JAGA01000002_gene938
Preferred namefolE
PFAMsGTP_cyclohydroI
Max annot lvl2|Bacteria
KEGG rclassRC00263,RC00294,RC00323,RC00945,RC01188
KEGG koko:K01495
KEGG ReactionR00428,R04639,R05046,R05048
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00841,M00842,M00843
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003933,GO:0003934,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006725,GO:0006729,GO:0006732,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009108,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0017076,GO:0017144,GO:0018130,GO:0019001,GO:0019238,GO:0019438,GO:0019751,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034311,GO:0034312,GO:0034641,GO:0035639,GO:0036094,GO:0042558,GO:0042559,GO:0043167,GO:0043168,GO:0043169,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046146,GO:0046165,GO:0046173,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Evalue5.55e-53
EggNOG OGsCOG0302@1|root,COG0302@2|Bacteria,2NPAT@2323|unclassified Bacteria
EC3.5.4.16
DescriptionGTP cyclohydrolase I
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7639Gvermi7639Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1149257..1149718 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7639.t1.start1Gvermi7639.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1149257..1149259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7639.t1.CDS1Gvermi7639.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1149257..1149718 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7639.t1.exon1Gvermi7639.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1149257..1149718 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7639.t1.stop1Gvermi7639.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1149716..1149718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7639.t1Gvermi7639.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1149257..1149718 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7639.t1 ID=Gvermi7639.t1|Name=Gvermi7639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=154bp
MFSELLSGYRTDPSKLLNGALFEEAANDLILLRNMTFYSMCEHHLLTFSG
KVHVAYVPAGRVIGLSKVPRVVEMFARRLQLQERLTSQIAHFLHHVLQPS
ALAVVIDGSHLCATIRGVRSPEASVTTSVMLGDFKTDRTLRQEFWSQLRS
ASQ*
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spliced messenger RNA

>Gvermi7639.t1 ID=Gvermi7639.t1|Name=Gvermi7639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=462bp|location=Sequence derived from alignment at ScGOVlb_64:1149257..1149718+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCCGAACTGCTCTCCGGCTACCGCACCGACCCGTCCAAGCTGCT
CAACGGCGCCCTCTTCGAGGAGGCCGCCAACGACCTCATCCTCCTGCGCA
ACATGACCTTCTACTCCATGTGCGAGCACCATTTACTCACCTTCTCGGGC
AAGGTGCACGTCGCCTACGTCCCCGCCGGCCGCGTCATCGGCCTCAGCAA
GGTCCCGCGCGTCGTCGAGATGTTTGCCCGAAGATTGCAGCTGCAGGAGC
GTCTCACCTCCCAGATCGCCCACTTCCTCCACCACGTCCTCCAACCGTCC
GCCCTGGCCGTCGTCATCGACGGCTCCCACCTGTGCGCCACCATTCGCGG
CGTCCGCTCCCCCGAGGCCTCCGTCACCACCTCCGTCATGCTGGGCGACT
TTAAAACCGACCGCACCCTGCGCCAGGAGTTCTGGAGCCAGCTGCGCAGC
GCCTCCCAATAA
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protein sequence of Gvermi7639.t1

>Gvermi7639.t1 ID=Gvermi7639.t1|Name=Gvermi7639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=154bp
MFSELLSGYRTDPSKLLNGALFEEAANDLILLRNMTFYSMCEHHLLTFSG
KVHVAYVPAGRVIGLSKVPRVVEMFARRLQLQERLTSQIAHFLHHVLQPS
ALAVVIDGSHLCATIRGVRSPEASVTTSVMLGDFKTDRTLRQEFWSQLRS
ASQ*
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mRNA from alignment at ScGOVlb_64:1149257..1149718+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7639.t1 ID=Gvermi7639.t1|Name=Gvermi7639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=462bp|location=Sequence derived from alignment at ScGOVlb_64:1149257..1149718+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCCGAACTGCTCTCCGGCTACCGCACCGACCCGTCCAAGCTGCT
CAACGGCGCCCTCTTCGAGGAGGCCGCCAACGACCTCATCCTCCTGCGCA
ACATGACCTTCTACTCCATGTGCGAGCACCATTTACTCACCTTCTCGGGC
AAGGTGCACGTCGCCTACGTCCCCGCCGGCCGCGTCATCGGCCTCAGCAA
GGTCCCGCGCGTCGTCGAGATGTTTGCCCGAAGATTGCAGCTGCAGGAGC
GTCTCACCTCCCAGATCGCCCACTTCCTCCACCACGTCCTCCAACCGTCC
GCCCTGGCCGTCGTCATCGACGGCTCCCACCTGTGCGCCACCATTCGCGG
CGTCCGCTCCCCCGAGGCCTCCGTCACCACCTCCGTCATGCTGGGCGACT
TTAAAACCGACCGCACCCTGCGCCAGGAGTTCTGGAGCCAGCTGCGCAGC
GCCTCCCAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1149257..1149718+

>Gvermi7639.t1 ID=Gvermi7639.t1|Name=Gvermi7639.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=462bp|location=Sequence derived from alignment at ScGOVlb_64:1149257..1149718+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCCGAACTGCTCTCCGGCTACCGCACCGACCCGTCCAAGCTGCT
CAACGGCGCCCTCTTCGAGGAGGCCGCCAACGACCTCATCCTCCTGCGCA
ACATGACCTTCTACTCCATGTGCGAGCACCATTTACTCACCTTCTCGGGC
AAGGTGCACGTCGCCTACGTCCCCGCCGGCCGCGTCATCGGCCTCAGCAA
GGTCCCGCGCGTCGTCGAGATGTTTGCCCGAAGATTGCAGCTGCAGGAGC
GTCTCACCTCCCAGATCGCCCACTTCCTCCACCACGTCCTCCAACCGTCC
GCCCTGGCCGTCGTCATCGACGGCTCCCACCTGTGCGCCACCATTCGCGG
CGTCCGCTCCCCCGAGGCCTCCGTCACCACCTCCGTCATGCTGGGCGACT
TTAAAACCGACCGCACCCTGCGCCAGGAGTTCTGGAGCCAGCTGCGCAGC
GCCTCCCAATAA
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