Gvermi7682.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7682.t1
Unique NameGvermi7682.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length245
Homology
BLAST of Gvermi7682.t1 vs. uniprot
Match: A0A2V3IME4_9FLOR (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 155 bits (393), Expect = 5.910e-41
Identity = 68/164 (41.46%), Postives = 107/164 (65.24%), Query Frame = 0
Query:   19 ATLVQESIKSKFETVADLLNCNVKPSEICILRGGALEIFWQNSIAVDECHFQNPPKLYDSYNSLFKAVANRECKYAVMIETALMAATRMKYCRRFVIVGKPLFNNGLSMLLPKGSDMTDKMSQATLDLMGNQTQTYLDKYMSNLPRCRVDSGQTLSFNKLHGFF 182
            A+LVQE++ + F+++ D   C + P+E+C+  GGALE+FW  SIA++ CH Q  P    SY+ LF AV NR CKY +++E+   AA   KYC + +   KP+++ GL+M+LPK S++TD MS ATL +        +++Y +++P+C ++   TL+F KL  FF
Sbjct:  276 ASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAIEVCHKQRQPFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFF 439          
BLAST of Gvermi7682.t1 vs. uniprot
Match: A0A2V3IMD5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 153 bits (386), Expect = 3.030e-40
Identity = 71/195 (36.41%), Postives = 122/195 (62.56%), Query Frame = 0
Query:    4 SLCFAFWGLLIER-LRATLVQESIKSKFETVADLLNCNVKPSEICILRGGALEIFWQNSIAVDECHFQNPPKLYDSYNSLFKAVANRECKYAVMIETALMAATRMKYCRRFVIVGKPLFNNGLSMLLPKGSDMTDKMSQATLDLMGNQTQTYLDKYMSNLPRCRVDSGQTLSFNKLHGFFVLVYIVVGTLLLAMI 197
             +C  F  L  E  + A+LVQE I S +E+  D  +C + PS++C LRGGALE+FW  +IA   CH  NP +   +Y  ++  +A+ +CK+++ +E+ +    R + C + V++ +PL+ +GLSM++PKGS++T+ MS+AT+ L+ +Q  ++L+ ++   P+C      TL+F KL  FF+L + V   +L  M+
Sbjct:  219 GICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVML 413          
BLAST of Gvermi7682.t1 vs. uniprot
Match: A0A2V3IUK7_9FLOR (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 127 bits (318), Expect = 2.590e-30
Identity = 64/187 (34.22%), Postives = 105/187 (56.15%), Query Frame = 0
Query:    4 SLCFAFWGLLI-----ERLRATLVQESIKSKFETVADLLNCNVKPSEICILRGGALEIFWQNSIAVDECHFQNPPKLY--DSYNSLFKAVANRECKYAVMIETALMAATRMKYCRRFVIVGKPLFNNGLSMLLPKGSDMTDKMSQATLDLMGNQTQTYLDKYMSNLPRCRVDSGQTLSFNKLHGFFV 183
            +L    +GLL+       + ATLVQE++ S +++V DL  C +KP ++C+  G A+  FW ++IA  +CH ++  K Y   S+     AV N  CK+ +++++ +  A   KYC + +  G+P++  GLSM+LPK S++T  M  ATL L    +   L +Y   + +C   +G  L+F KL   FV
Sbjct:  251 NLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYGDCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFV 437          
BLAST of Gvermi7682.t1 vs. uniprot
Match: R7Q540_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q540_CHOCR)

HSP 1 Score: 112 bits (281), Expect = 4.260e-27
Identity = 57/184 (30.98%), Postives = 102/184 (55.43%), Query Frame = 0
Query:   19 ATLVQESIKSKFETVADLLNCNVKPSEICILRGGALEIFWQNSIAVDECHFQNPPKLYDSYNSLFKAVANRECKYAVMIETALMAATRMKYCRRFVIVGKPLFNNGLSMLLPKGSDMTDKMSQATLDLMGNQTQTYLDKYMSNLPRCRVDSGQTLSFNKLHGFFVLVYIVVGTLLLAMIFIPQQ 202
            A LVQ+++ S++  + DL  CNV+PS++C+ +GGA+++FW N+I  + CH +  P  +  Y      +  ++C Y + + ++    T+ +YC R ++ G+P    GLS +LP+GS+MT  +S+ T+ L         ++Y+    +C  +   TL+  KL  FF + +     + L MI   QQ
Sbjct:   11 AALVQDTLSSRYRGLQDLKTCNVRPSDVCVPKGGAIDLFWINTIGKNACH-KEKPVYFSRYKDGIDNLLTKKCLYMLTLSSSGNELTQREYCGRLLVTGEPALRTGLSFVLPRGSNMTSHLSEKTVFLTDAGVLPTPERYLRATGKCP-EQNLTLNVEKLRFFFYMAFSACLFIFLEMILDSQQ 192          
The following BLAST results are available for this feature:
BLAST of Gvermi7682.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IME4_9FLOR5.910e-4141.46Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD5_9FLOR3.030e-4036.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUK7_9FLOR2.590e-3034.22Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7Q540_CHOCR4.260e-2730.98Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 26..160
e-value: 1.7E-5
score: 26.7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..177
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..199
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 200..244
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 21..158
NoneNo IPR availableTMHMMTMhelixcoord: 178..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2243467..2244288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7682.t1Gvermi7682.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_64 2243467..2244288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7682.t1 ID=Gvermi7682.t1|Name=Gvermi7682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=245bp
MLTSLCFAFWGLLIERLRATLVQESIKSKFETVADLLNCNVKPSEICILR
GGALEIFWQNSIAVDECHFQNPPKLYDSYNSLFKAVANRECKYAVMIETA
LMAATRMKYCRRFVIVGKPLFNNGLSMLLPKGSDMTDKMSQATLDLMGNQ
TQTYLDKYMSNLPRCRVDSGQTLSFNKLHGFFVLVYIVVGTLLLAMIFIP
QQTSKGIECQESPASALSNEVKQVSEECSKHSPCSETNTAEDTI*
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