Gvermi7629.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7629.t1
Unique NameGvermi7629.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:906818..908221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_013846-tr
PFAMsRVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue1.71e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7629Gvermi7629Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 906818..908221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7629.t1Gvermi7629.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 906818..908221 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7629.t1.stop1Gvermi7629.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 906818..906820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7629.t1.CDS1Gvermi7629.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 906818..907160 -
Gvermi7629.t1.CDS2Gvermi7629.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 907245..907639 -
Gvermi7629.t1.CDS3Gvermi7629.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 907706..908221 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7629.t1.exon1Gvermi7629.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 906818..907160 -
Gvermi7629.t1.exon2Gvermi7629.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 907245..907639 -
Gvermi7629.t1.exon3Gvermi7629.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 907706..908221 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7629.t1.intron1Gvermi7629.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 907161..907244 -
Gvermi7629.t1.intron2Gvermi7629.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 907640..907705 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7629.t1.start1Gvermi7629.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 908219..908221 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7629.t1 ID=Gvermi7629.t1|Name=Gvermi7629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=418bp
MACFYAAPPLDGTLQKLVPTKLSARVLYLSHYARLVGHPGGSRIYFTIRK
DFYWPNIASDAFQTVADFYSCAAARGSIRKHWTSLTLFPPSGPLEFVAID
ILGLLPKTEREHRFILVIMDRFSKITHAIPLRSTTVAVIADAFLEHWVYP
YGISLYFHTENRPQFAAKLFSAAERFNKTIASRLKRYVVDHQKDWDANVG
PLTYAYNLQVHRSTGTSPFNLMLSRIPPSSVIAARAAAHPADGPQTPTAA
QAQRSILRRYEKAFSLAKESLNASQRRYKKDFDRKVMEGPHLKKGDEVFL
DKPGDTVSIEVNGLRYVVSRDRVTKVPTPNLSGIPTTAPQGQRAEIPHAT
TSGTTTPRDTGNRITALVEPSLEAPDAILTPEGNILYAVNHIVSHRQTPA
EILHRVRWYGYTSKDDT*
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spliced messenger RNA

>Gvermi7629.t1 ID=Gvermi7629.t1|Name=Gvermi7629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at ScGOVlb_64:906818..908221- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTGCTTCTACGCCGCGCCCCCCCTGGATGGAACTCTCCAAAAGTT
GGTGCCGACAAAGCTATCGGCGAGAGTGTTGTATCTCTCGCACTATGCTC
GCCTCGTCGGGCATCCCGGTGGATCTCGGATATATTTCACCATACGGAAG
GACTTCTATTGGCCGAATATCGCTAGTGACGCCTTCCAAACGGTGGCGGA
TTTCTATTCCTGCGCCGCCGCTAGGGGGAGTATACGGAAACACTGGACGT
CGCTCACGCTGTTTCCACCTTCAGGACCGCTGGAGTTTGTGGCCATAGAC
ATCTTGGGTCTTCTCCCCAAGACGGAGCGAGAACATCGATTTATCCTCGT
GATTATGGATCGTTTCTCCAAGATCACGCACGCCATCCCCCTCCGGAGCA
CTACTGTGGCAGTGATTGCTGACGCCTTTCTGGAGCATTGGGTTTACCCC
TACGGGATATCGTTGTACTTCCATACGGAAAATCGCCCCCAGTTCGCGGC
GAAACTCTTCAGCGCCGCGGAAAGGTTCAACAAAACCATCGCCTCGAGGC
TGAAGCGCTACGTCGTGGACCACCAGAAGGATTGGGACGCAAATGTGGGA
CCCCTCACGTATGCATACAACCTACAGGTGCACCGCTCCACGGGTACCTC
TCCTTTCAATCTGATGCTCTCACGCATCCCGCCAAGTTCCGTCATCGCAG
CACGCGCCGCGGCGCACCCGGCGGATGGGCCACAGACGCCAACAGCGGCG
CAGGCCCAACGCTCCATCCTAAGGCGATATGAGAAAGCGTTCTCGCTCGC
GAAGGAGAGCCTCAACGCCTCGCAGAGGAGATATAAAAAGGACTTCGACC
GAAAGGTCATGGAAGGCCCTCACCTGAAGAAAGGCGACGAAGTTTTCCTA
GACAAACCCGGGGATACTGTCTCCATTGAGGTGAACGGACTCAGGTACGT
CGTCTCCCGTGATAGGGTGACGAAAGTCCCAACGCCCAACCTCTCAGGAA
TTCCCACCACCGCACCTCAAGGACAACGTGCGGAGATTCCTCACGCGACC
ACCTCAGGCACGACGACACCACGGGATACTGGTAACCGTATTACCGCTCT
CGTTGAACCATCACTGGAGGCTCCCGATGCTATCCTGACCCCTGAAGGTA
ACATCCTCTACGCGGTGAACCATATCGTCTCCCATCGTCAAACCCCTGCA
GAAATACTGCACCGCGTCCGCTGGTATGGGTACACCTCGAAGGACGACAC
GTAA
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protein sequence of Gvermi7629.t1

>Gvermi7629.t1 ID=Gvermi7629.t1|Name=Gvermi7629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=418bp
MACFYAAPPLDGTLQKLVPTKLSARVLYLSHYARLVGHPGGSRIYFTIRK
DFYWPNIASDAFQTVADFYSCAAARGSIRKHWTSLTLFPPSGPLEFVAID
ILGLLPKTEREHRFILVIMDRFSKITHAIPLRSTTVAVIADAFLEHWVYP
YGISLYFHTENRPQFAAKLFSAAERFNKTIASRLKRYVVDHQKDWDANVG
PLTYAYNLQVHRSTGTSPFNLMLSRIPPSSVIAARAAAHPADGPQTPTAA
QAQRSILRRYEKAFSLAKESLNASQRRYKKDFDRKVMEGPHLKKGDEVFL
DKPGDTVSIEVNGLRYVVSRDRVTKVPTPNLSGIPTTAPQGQRAEIPHAT
TSGTTTPRDTGNRITALVEPSLEAPDAILTPEGNILYAVNHIVSHRQTPA
EILHRVRWYGYTSKDDT*
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mRNA from alignment at ScGOVlb_64:906818..908221-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7629.t1 ID=Gvermi7629.t1|Name=Gvermi7629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at ScGOVlb_64:906818..908221- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTGCTTCTACGCCGCGCCCCCCCTGGATGGAACTCTCCAAAAGTT
GGTGCCGACAAAGCTATCGGCGAGAGTGTTGTATCTCTCGCACTATGCTC
GCCTCGTCGGGCATCCCGGTGGATCTCGGATATATTTCACCATACGGAAG
GACTTCTATTGGCCGAATATCGCTAGTGACGCCTTCCAAACGGTGGCGGA
TTTCTATTCCTGCGCCGCCGCTAGGGGGAGTATACGGAAACACTGGACGT
CGCTCACGCTGTTTCCACCTTCAGGACCGCTGGAGTTTGTGGCCATAGAC
ATCTTGGGTCTTCTCCCCAAGACGGAGCGAGAACATCGATTTATCCTCGT
GATTATGGATCGTTTCTCCAAGATCACGCACGCCATCCCCCTCCGGAGCA
CTACTGTGGCAGTGATTGCTGACGCCTTTCTGGAGCATTGGGTTTACCCC
TACGGGATATCGTTGTACTTCCATACGGAAAATCGCCCCCAGTTCGCGGC
GAAACTCTTCAGCGCCGTGTCCGGAATGCTGGGCATGAAAAAGTTGTTTA
TAACTGCCTATCACCCCTAGAAAAATGGACAGGCGGAAAGGTTCAACAAA
ACCATCGCCTCGAGGCTGAAGCGCTACGTCGTGGACCACCAGAAGGATTG
GGACGCAAATGTGGGACCCCTCACGTATGCATACAACCTACAGGTGCACC
GCTCCACGGGTACCTCTCCTTTCAATCTGATGCTCTCACGCATCCCGCCA
AGTTCCGTCATCGCAGCACGCGCCGCGGCGCACCCGGCGGATGGGCCACA
GACGCCAACAGCGGCGCAGGCCCAACGCTCCATCCTAAGGCGATATGAGA
AAGCGTTCTCGCTCGCGAAGGAGAGCCTCAACGCCTCGCAGAGGAGATAT
AAAAAGGACTTCGACCGAAAGGTCATGGAAGGCCCTCACCTGAAGAAAGG
CGACGAAGTTTTCCTAGACAAACCCGGGTAAAACTTCGATGAAACGCCGG
AAGTCAGGCGCAAGTTAGCGCCGACCACCTCAGGGCCTTACAAAGTCCTG
GCCACCTATAGGGATACTGTCTCCATTGAGGTGAACGGACTCAGGTACGT
CGTCTCCCGTGATAGGGTGACGAAAGTCCCAACGCCCAACCTCTCAGGAA
TTCCCACCACCGCACCTCAAGGACAACGTGCGGAGATTCCTCACGCGACC
ACCTCAGGCACGACGACACCACGGGATACTGGTAACCGTATTACCGCTCT
CGTTGAACCATCACTGGAGGCTCCCGATGCTATCCTGACCCCTGAAGGTA
ACATCCTCTACGCGGTGAACCATATCGTCTCCCATCGTCAAACCCCTGCA
GAAATACTGCACCGCGTCCGCTGGTATGGGTACACCTCGAAGGACGACAC
GTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:906818..908221-

>Gvermi7629.t1 ID=Gvermi7629.t1|Name=Gvermi7629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1254bp|location=Sequence derived from alignment at ScGOVlb_64:906818..908221- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTGCTTCTACGCCGCGCCCCCCCTGGATGGAACTCTCCAAAAGTT
GGTGCCGACAAAGCTATCGGCGAGAGTGTTGTATCTCTCGCACTATGCTC
GCCTCGTCGGGCATCCCGGTGGATCTCGGATATATTTCACCATACGGAAG
GACTTCTATTGGCCGAATATCGCTAGTGACGCCTTCCAAACGGTGGCGGA
TTTCTATTCCTGCGCCGCCGCTAGGGGGAGTATACGGAAACACTGGACGT
CGCTCACGCTGTTTCCACCTTCAGGACCGCTGGAGTTTGTGGCCATAGAC
ATCTTGGGTCTTCTCCCCAAGACGGAGCGAGAACATCGATTTATCCTCGT
GATTATGGATCGTTTCTCCAAGATCACGCACGCCATCCCCCTCCGGAGCA
CTACTGTGGCAGTGATTGCTGACGCCTTTCTGGAGCATTGGGTTTACCCC
TACGGGATATCGTTGTACTTCCATACGGAAAATCGCCCCCAGTTCGCGGC
GAAACTCTTCAGCGCCGCGGAAAGGTTCAACAAAACCATCGCCTCGAGGC
TGAAGCGCTACGTCGTGGACCACCAGAAGGATTGGGACGCAAATGTGGGA
CCCCTCACGTATGCATACAACCTACAGGTGCACCGCTCCACGGGTACCTC
TCCTTTCAATCTGATGCTCTCACGCATCCCGCCAAGTTCCGTCATCGCAG
CACGCGCCGCGGCGCACCCGGCGGATGGGCCACAGACGCCAACAGCGGCG
CAGGCCCAACGCTCCATCCTAAGGCGATATGAGAAAGCGTTCTCGCTCGC
GAAGGAGAGCCTCAACGCCTCGCAGAGGAGATATAAAAAGGACTTCGACC
GAAAGGTCATGGAAGGCCCTCACCTGAAGAAAGGCGACGAAGTTTTCCTA
GACAAACCCGGGGATACTGTCTCCATTGAGGTGAACGGACTCAGGTACGT
CGTCTCCCGTGATAGGGTGACGAAAGTCCCAACGCCCAACCTCTCAGGAA
TTCCCACCACCGCACCTCAAGGACAACGTGCGGAGATTCCTCACGCGACC
ACCTCAGGCACGACGACACCACGGGATACTGGTAACCGTATTACCGCTCT
CGTTGAACCATCACTGGAGGCTCCCGATGCTATCCTGACCCCTGAAGGTA
ACATCCTCTACGCGGTGAACCATATCGTCTCCCATCGTCAAACCCCTGCA
GAAATACTGCACCGCGTCCGCTGGTATGGGTACACCTCGAAGGACGACAC
GTAA
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