Gvermi7638.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7638.t2
Unique Name	Gvermi7638.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:1037809..1038807 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD40142
Preferred name	CYCB
PFAMs	Cyclin_C,Cyclin_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21770,ko:K21777
KEGG TC	1.I.1.1.3
KEGG Pathway	ko04068,ko04110,ko04114,ko04115,ko04218,ko04914,ko05166,map04068,map04110,map04114,map04115,map04218,map04914,map05166
GOs	GO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0010332,GO:0040008,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0065007
Evalue	3.22e-44
EggNOG OGs	COG5024@1\|root,KOG0653@2759\|Eukaryota
Description	cell division
COG category	D
BRITE	ko00000,ko00001,ko03032,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7638	Gvermi7638	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 1037809..1069708 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7638.t2.stop1	Gvermi7638.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 1037809..1037811 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7638.t2.CDS1	Gvermi7638.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 1037809..1038807 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7638.t2.exon1	Gvermi7638.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 1037809..1038807 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7638.t2.start1	Gvermi7638.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 1038805..1038807 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7638.t2	Gvermi7638.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 1037809..1038807 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:1037809..1038807-
coding sequence from alignment at ScGOVlb_64:1037809..1038807-

mRNA sequence

>Gvermi7638.t2 ID=Gvermi7638.t2|Name=Gvermi7638.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=333bp
MMPKRALADITNRVSKFNDSYPSKRSATSQKVSSKSSIPKRTRPLPVEKV
PLAHKRSPIDAASNYIDIDAQDKLNNAEGSDFAAVIHKNHLLAETKHLPN
STLLQHHRTVTKDMRSILVDWLADVCVSLKLKDSSFHLCVHILDRFLQTH
EPTRKTLQLVGSVCLYIATKYEEIYAPDASDFVTLSDGAFSRDDVVLMEA
CILNALRFEVSTPYCLTFLARIGKTLAAKGVPAHVVDNVLKSAQLFAELA
MVDGCHLKYRPSHLSAAAALLSMQKLGVMTSWCESLCLHSGWSEHQLVRC
VEDIEKLVDNARRPANRLSAIRRKFESNTINF*

spliced messenger RNA

>Gvermi7638.t2 ID=Gvermi7638.t2|Name=Gvermi7638.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=999bp|location=Sequence derived from alignment at ScGOVlb_64:1037809..1038807- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCGAAACGCGCCCTTGCGGACATTACCAACCGTGTGTCAAAATT
CAACGACTCTTATCCGTCCAAACGTTCTGCCACCTCCCAAAAAGTCTCCA
GCAAAAGCTCCATCCCGAAGCGAACTCGCCCTCTGCCTGTTGAAAAGGTG
CCGTTGGCTCACAAAAGGTCCCCAATTGACGCAGCTTCCAATTACATCGA
CATTGACGCTCAAGACAAACTGAACAATGCAGAAGGAAGCGACTTTGCTG
CAGTTATTCATAAAAATCATCTGTTGGCGGAAACAAAACATCTGCCCAAC
AGCACCCTTCTGCAACACCACAGGACAGTGACAAAAGACATGAGATCCAT
TCTGGTTGACTGGCTGGCAGATGTGTGCGTGAGTCTCAAGCTGAAGGACA
GTTCGTTCCATTTATGTGTTCACATTCTCGACCGTTTCCTTCAGACTCAC
GAGCCTACCCGCAAGACTCTGCAACTGGTGGGCAGTGTGTGCCTATATAT
TGCCACAAAGTACGAAGAGATATACGCCCCCGATGCGAGTGATTTCGTCA
CTCTGTCGGACGGCGCGTTCAGCAGGGACGACGTGGTTCTCATGGAGGCT
TGCATCTTGAATGCGCTTCGGTTCGAGGTGAGCACGCCGTACTGCTTGAC
GTTCTTGGCCCGGATCGGCAAGACGCTTGCGGCAAAGGGCGTCCCCGCCC
ACGTGGTCGACAACGTGTTGAAAAGCGCACAACTGTTCGCAGAGCTGGCC
ATGGTAGACGGGTGCCATTTGAAGTACAGACCCAGTCATCTATCCGCCGC
AGCAGCTTTGCTCTCAATGCAAAAGCTTGGCGTGATGACGAGTTGGTGTG
AGAGTCTCTGTTTGCACTCTGGATGGAGCGAGCATCAACTCGTTCGATGC
GTCGAGGACATCGAGAAGCTGGTCGACAACGCCCGGCGCCCCGCGAACCG
GCTGAGCGCTATTCGTAGAAAGTTCGAGAGCAATACCATAAACTTTTGA

protein sequence of Gvermi7638.t2

>Gvermi7638.t2 ID=Gvermi7638.t2|Name=Gvermi7638.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=333bp
MMPKRALADITNRVSKFNDSYPSKRSATSQKVSSKSSIPKRTRPLPVEKV
PLAHKRSPIDAASNYIDIDAQDKLNNAEGSDFAAVIHKNHLLAETKHLPN
STLLQHHRTVTKDMRSILVDWLADVCVSLKLKDSSFHLCVHILDRFLQTH
EPTRKTLQLVGSVCLYIATKYEEIYAPDASDFVTLSDGAFSRDDVVLMEA
CILNALRFEVSTPYCLTFLARIGKTLAAKGVPAHVVDNVLKSAQLFAELA
MVDGCHLKYRPSHLSAAAALLSMQKLGVMTSWCESLCLHSGWSEHQLVRC
VEDIEKLVDNARRPANRLSAIRRKFESNTINF*

mRNA from alignment at ScGOVlb_64:1037809..1038807-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7638.t2 ID=Gvermi7638.t2|Name=Gvermi7638.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=999bp|location=Sequence derived from alignment at ScGOVlb_64:1037809..1038807- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCCGAAACGCGCCCTTGCGGACATTACCAACCGTGTGTCAAAATT
CAACGACTCTTATCCGTCCAAACGTTCTGCCACCTCCCAAAAAGTCTCCA
GCAAAAGCTCCATCCCGAAGCGAACTCGCCCTCTGCCTGTTGAAAAGGTG
CCGTTGGCTCACAAAAGGTCCCCAATTGACGCAGCTTCCAATTACATCGA
CATTGACGCTCAAGACAAACTGAACAATGCAGAAGGAAGCGACTTTGCTG
CAGTTATTCATAAAAATCATCTGTTGGCGGAAACAAAACATCTGCCCAAC
AGCACCCTTCTGCAACACCACAGGACAGTGACAAAAGACATGAGATCCAT
TCTGGTTGACTGGCTGGCAGATGTGTGCGTGAGTCTCAAGCTGAAGGACA
GTTCGTTCCATTTATGTGTTCACATTCTCGACCGTTTCCTTCAGACTCAC
GAGCCTACCCGCAAGACTCTGCAACTGGTGGGCAGTGTGTGCCTATATAT
TGCCACAAAGTACGAAGAGATATACGCCCCCGATGCGAGTGATTTCGTCA
CTCTGTCGGACGGCGCGTTCAGCAGGGACGACGTGGTTCTCATGGAGGCT
TGCATCTTGAATGCGCTTCGGTTCGAGGTGAGCACGCCGTACTGCTTGAC
GTTCTTGGCCCGGATCGGCAAGACGCTTGCGGCAAAGGGCGTCCCCGCCC
ACGTGGTCGACAACGTGTTGAAAAGCGCACAACTGTTCGCAGAGCTGGCC
ATGGTAGACGGGTGCCATTTGAAGTACAGACCCAGTCATCTATCCGCCGC
AGCAGCTTTGCTCTCAATGCAAAAGCTTGGCGTGATGACGAGTTGGTGTG
AGAGTCTCTGTTTGCACTCTGGATGGAGCGAGCATCAACTCGTTCGATGC
GTCGAGGACATCGAGAAGCTGGTCGACAACGCCCGGCGCCCCGCGAACCG
GCTGAGCGCTATTCGTAGAAAGTTCGAGAGCAATACCATAAACTTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_64:1037809..1038807-

>Gvermi7638.t2 ID=Gvermi7638.t2|Name=Gvermi7638.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=999bp|location=Sequence derived from alignment at ScGOVlb_64:1037809..1038807- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCCGAAACGCGCCCTTGCGGACATTACCAACCGTGTGTCAAAATT
CAACGACTCTTATCCGTCCAAACGTTCTGCCACCTCCCAAAAAGTCTCCA
GCAAAAGCTCCATCCCGAAGCGAACTCGCCCTCTGCCTGTTGAAAAGGTG
CCGTTGGCTCACAAAAGGTCCCCAATTGACGCAGCTTCCAATTACATCGA
CATTGACGCTCAAGACAAACTGAACAATGCAGAAGGAAGCGACTTTGCTG
CAGTTATTCATAAAAATCATCTGTTGGCGGAAACAAAACATCTGCCCAAC
AGCACCCTTCTGCAACACCACAGGACAGTGACAAAAGACATGAGATCCAT
TCTGGTTGACTGGCTGGCAGATGTGTGCGTGAGTCTCAAGCTGAAGGACA
GTTCGTTCCATTTATGTGTTCACATTCTCGACCGTTTCCTTCAGACTCAC
GAGCCTACCCGCAAGACTCTGCAACTGGTGGGCAGTGTGTGCCTATATAT
TGCCACAAAGTACGAAGAGATATACGCCCCCGATGCGAGTGATTTCGTCA
CTCTGTCGGACGGCGCGTTCAGCAGGGACGACGTGGTTCTCATGGAGGCT
TGCATCTTGAATGCGCTTCGGTTCGAGGTGAGCACGCCGTACTGCTTGAC
GTTCTTGGCCCGGATCGGCAAGACGCTTGCGGCAAAGGGCGTCCCCGCCC
ACGTGGTCGACAACGTGTTGAAAAGCGCACAACTGTTCGCAGAGCTGGCC
ATGGTAGACGGGTGCCATTTGAAGTACAGACCCAGTCATCTATCCGCCGC
AGCAGCTTTGCTCTCAATGCAAAAGCTTGGCGTGATGACGAGTTGGTGTG
AGAGTCTCTGTTTGCACTCTGGATGGAGCGAGCATCAACTCGTTCGATGC
GTCGAGGACATCGAGAAGCTGGTCGACAACGCCCGGCGCCCCGCGAACCG
GCTGAGCGCTATTCGTAGAAAGTTCGAGAGCAATACCATAAACTTTTGA