Gvermi7615.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7615.t1
Unique Name	Gvermi7615.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	235

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:497861..498565 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	373994.Riv7116_2245
PFAMs	AhpC-TSA
Max annot lvl	1117\|Cyanobacteria
Evalue	1.64e-46
EggNOG OGs	COG1225@1\|root,COG1225@2\|Bacteria,1G3WF@1117\|Cyanobacteria
Description	PFAM AhpC TSA family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7615	Gvermi7615	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 497861..498565 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7615.t1.start1	Gvermi7615.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 497861..497863 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7615.t1.CDS1	Gvermi7615.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 497861..498565 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7615.t1.exon1	Gvermi7615.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 497861..498565 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7615.t1.stop1	Gvermi7615.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 498563..498565 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7615.t1	Gvermi7615.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 497861..498565 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:497861..498565+
coding sequence from alignment at ScGOVlb_64:497861..498565+

mRNA sequence

>Gvermi7615.t1 ID=Gvermi7615.t1|Name=Gvermi7615.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=235bp
MTAVALSPHSVLPPLAPVLNAKKNQLNETLSPEFLAEIERTSVELQKLFT
PTPLRVNDVAPLFTLDDALGNPVSLSDLLDSHQAVVVTWYRGVWCPYCNA
TLDSLILANDHIEALGAKLVTISAQTPDESREMIEEMGLPFHTLSDDGLT
VAEKYGIAYSVTDGIKSLYNDFGVDLDAINGNERKRKPRLPVPATFVLDK
TGTVRFAYADIDYTTRAEPQQIVEVIQNIVESYE*

spliced messenger RNA

>Gvermi7615.t1 ID=Gvermi7615.t1|Name=Gvermi7615.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=705bp|location=Sequence derived from alignment at ScGOVlb_64:497861..498565+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCCGTTGCTCTTTCCCCGCACTCTGTGTTGCCCCCGCTGGCTCC
AGTGCTCAATGCCAAGAAGAATCAATTGAACGAGACGCTTTCGCCCGAGT
TTTTGGCCGAGATTGAGAGGACTTCCGTCGAGTTACAAAAGCTGTTCACG
CCCACCCCACTACGGGTCAATGATGTCGCTCCCCTGTTTACCCTGGACGA
CGCGTTGGGCAACCCGGTCTCGCTCTCAGACCTGCTCGACTCGCACCAGG
CTGTCGTCGTCACCTGGTATCGAGGCGTCTGGTGCCCGTACTGCAACGCA
ACTCTGGACTCGCTCATCCTCGCAAACGACCACATCGAAGCGCTAGGCGC
CAAACTGGTCACAATCTCCGCGCAGACCCCCGATGAAAGTCGCGAGATGA
TCGAGGAAATGGGGCTGCCGTTTCACACGCTGAGCGACGATGGGCTCACC
GTCGCCGAAAAATACGGCATCGCGTACTCGGTCACCGATGGAATCAAGTC
GTTGTACAACGACTTTGGAGTGGATTTGGACGCTATCAACGGCAACGAGC
GCAAACGGAAGCCCAGACTGCCCGTCCCGGCCACGTTTGTTCTGGACAAG
ACCGGCACTGTGCGCTTTGCGTACGCCGACATCGACTATACCACTCGGGC
CGAGCCGCAACAAATTGTGGAAGTAATTCAAAACATCGTCGAATCGTACG
AATGA

protein sequence of Gvermi7615.t1

>Gvermi7615.t1 ID=Gvermi7615.t1|Name=Gvermi7615.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=235bp
MTAVALSPHSVLPPLAPVLNAKKNQLNETLSPEFLAEIERTSVELQKLFT
PTPLRVNDVAPLFTLDDALGNPVSLSDLLDSHQAVVVTWYRGVWCPYCNA
TLDSLILANDHIEALGAKLVTISAQTPDESREMIEEMGLPFHTLSDDGLT
VAEKYGIAYSVTDGIKSLYNDFGVDLDAINGNERKRKPRLPVPATFVLDK
TGTVRFAYADIDYTTRAEPQQIVEVIQNIVESYE*

mRNA from alignment at ScGOVlb_64:497861..498565+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7615.t1 ID=Gvermi7615.t1|Name=Gvermi7615.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=705bp|location=Sequence derived from alignment at ScGOVlb_64:497861..498565+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCCGTTGCTCTTTCCCCGCACTCTGTGTTGCCCCCGCTGGCTCC
AGTGCTCAATGCCAAGAAGAATCAATTGAACGAGACGCTTTCGCCCGAGT
TTTTGGCCGAGATTGAGAGGACTTCCGTCGAGTTACAAAAGCTGTTCACG
CCCACCCCACTACGGGTCAATGATGTCGCTCCCCTGTTTACCCTGGACGA
CGCGTTGGGCAACCCGGTCTCGCTCTCAGACCTGCTCGACTCGCACCAGG
CTGTCGTCGTCACCTGGTATCGAGGCGTCTGGTGCCCGTACTGCAACGCA
ACTCTGGACTCGCTCATCCTCGCAAACGACCACATCGAAGCGCTAGGCGC
CAAACTGGTCACAATCTCCGCGCAGACCCCCGATGAAAGTCGCGAGATGA
TCGAGGAAATGGGGCTGCCGTTTCACACGCTGAGCGACGATGGGCTCACC
GTCGCCGAAAAATACGGCATCGCGTACTCGGTCACCGATGGAATCAAGTC
GTTGTACAACGACTTTGGAGTGGATTTGGACGCTATCAACGGCAACGAGC
GCAAACGGAAGCCCAGACTGCCCGTCCCGGCCACGTTTGTTCTGGACAAG
ACCGGCACTGTGCGCTTTGCGTACGCCGACATCGACTATACCACTCGGGC
CGAGCCGCAACAAATTGTGGAAGTAATTCAAAACATCGTCGAATCGTACG
AATGA

Coding sequence (CDS) from alignment at ScGOVlb_64:497861..498565+

>Gvermi7615.t1 ID=Gvermi7615.t1|Name=Gvermi7615.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=705bp|location=Sequence derived from alignment at ScGOVlb_64:497861..498565+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCCGTTGCTCTTTCCCCGCACTCTGTGTTGCCCCCGCTGGCTCC
AGTGCTCAATGCCAAGAAGAATCAATTGAACGAGACGCTTTCGCCCGAGT
TTTTGGCCGAGATTGAGAGGACTTCCGTCGAGTTACAAAAGCTGTTCACG
CCCACCCCACTACGGGTCAATGATGTCGCTCCCCTGTTTACCCTGGACGA
CGCGTTGGGCAACCCGGTCTCGCTCTCAGACCTGCTCGACTCGCACCAGG
CTGTCGTCGTCACCTGGTATCGAGGCGTCTGGTGCCCGTACTGCAACGCA
ACTCTGGACTCGCTCATCCTCGCAAACGACCACATCGAAGCGCTAGGCGC
CAAACTGGTCACAATCTCCGCGCAGACCCCCGATGAAAGTCGCGAGATGA
TCGAGGAAATGGGGCTGCCGTTTCACACGCTGAGCGACGATGGGCTCACC
GTCGCCGAAAAATACGGCATCGCGTACTCGGTCACCGATGGAATCAAGTC
GTTGTACAACGACTTTGGAGTGGATTTGGACGCTATCAACGGCAACGAGC
GCAAACGGAAGCCCAGACTGCCCGTCCCGGCCACGTTTGTTCTGGACAAG
ACCGGCACTGTGCGCTTTGCGTACGCCGACATCGACTATACCACTCGGGC
CGAGCCGCAACAAATTGTGGAAGTAATTCAAAACATCGTCGAATCGTACG
AATGA