Gvermi7649.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7649.t1
Unique NameGvermi7649.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length374
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1245538..1246659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1444309.JAQG01000155_gene4792
PFAMsNtox47
Max annot lvl1239|Firmicutes
Evalue6.46e-18
EggNOG OGsCOG1372@1|root,COG1372@2|Bacteria,1UP5S@1239|Firmicutes
DescriptionBacterial toxin 47
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7649Gvermi7649Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1245538..1246659 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7649.t1.stop1Gvermi7649.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1245538..1245540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7649.t1.CDS1Gvermi7649.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1245538..1246659 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7649.t1.exon1Gvermi7649.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1245538..1246659 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7649.t1.start1Gvermi7649.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1246657..1246659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7649.t1Gvermi7649.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1245538..1246659 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7649.t1 ID=Gvermi7649.t1|Name=Gvermi7649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=374bp
MLAAMFFSFMTLLVWATLVQANDYSVTIGADNGVTTRYQIVVRACQDSSC
STETTTGRTGRSTKVLAKFISGDIRKISFQLLNDRDPEANGVDVNLIIRD
VSIEGISIFPSDLVEQGIIAVKCTRTGDGSLVSNCPRSYRGTDAYVIPWN
DVLYEFSDIYRVSQHVDHRHRHLGFIAWGVADKRCEANVKDFSTPYCLQK
ADELAVTTSLYSYPPSGSGEGLDNPKNGWKFAPGKDIDWRNKNVNYKKAL
KYAMEDTGIASYRFEKNQVCPDSKYKRVVVDWTGPMGASVNMDIPEMNNV
GGAGPRAPHIGVTYTKIVNGIKRKTTRHIFVDSVPYTRVKLGLDRVNAPK
PIVLDPEECVFNYDANDVRMIVI*
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spliced messenger RNA

>Gvermi7649.t1 ID=Gvermi7649.t1|Name=Gvermi7649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at ScGOVlb_64:1245538..1246659- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGCTGCCATGTTTTTCTCCTTTATGACTTTGCTGGTGTGGGCAAC
TCTCGTGCAAGCCAACGATTATTCTGTGACTATTGGTGCAGACAATGGAG
TTACCACAAGGTACCAGATAGTTGTTCGTGCGTGCCAGGACTCGTCGTGC
TCTACAGAGACAACAACCGGGCGCACAGGTCGATCGACCAAAGTTCTGGC
AAAGTTCATCTCTGGCGATATCAGAAAAATTTCATTCCAGCTTTTGAATG
ATAGGGATCCGGAGGCGAACGGAGTAGATGTTAATCTCATCATCAGAGAC
GTATCGATCGAAGGTATTAGTATCTTCCCGTCCGACCTAGTGGAGCAAGG
CATTATTGCCGTCAAATGCACAAGAACCGGAGACGGAAGCCTTGTATCCA
ACTGTCCGAGGTCGTACCGCGGTACGGATGCCTATGTTATTCCATGGAAC
GACGTATTGTACGAGTTCAGTGATATTTATCGGGTTTCTCAGCACGTTGA
TCACAGACATCGGCACCTTGGTTTCATCGCCTGGGGTGTTGCAGACAAGA
GATGTGAAGCTAATGTCAAGGATTTCTCCACCCCGTACTGCCTCCAAAAG
GCTGATGAACTAGCAGTTACCACTTCACTCTACAGTTATCCTCCCAGCGG
AAGCGGAGAGGGCCTTGATAATCCCAAAAATGGCTGGAAATTTGCCCCTG
GAAAGGATATAGATTGGCGCAATAAGAATGTTAACTACAAGAAAGCGCTC
AAGTATGCCATGGAAGATACCGGAATAGCTAGTTACAGATTTGAAAAAAA
TCAGGTTTGCCCGGATTCCAAGTACAAGCGTGTTGTCGTAGACTGGACGG
GACCCATGGGTGCATCGGTCAACATGGACATACCCGAGATGAACAACGTT
GGTGGTGCTGGACCACGTGCTCCACATATTGGTGTGACGTACACTAAGAT
CGTCAACGGAATAAAGAGAAAGACTACTCGTCACATATTTGTTGACAGTG
TGCCATACACTCGGGTGAAGCTCGGCTTGGACCGTGTGAATGCCCCAAAG
CCGATTGTTCTCGATCCTGAAGAGTGCGTGTTCAATTACGACGCGAATGA
TGTAAGGATGATAGTGATATAG
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protein sequence of Gvermi7649.t1

>Gvermi7649.t1 ID=Gvermi7649.t1|Name=Gvermi7649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=374bp
MLAAMFFSFMTLLVWATLVQANDYSVTIGADNGVTTRYQIVVRACQDSSC
STETTTGRTGRSTKVLAKFISGDIRKISFQLLNDRDPEANGVDVNLIIRD
VSIEGISIFPSDLVEQGIIAVKCTRTGDGSLVSNCPRSYRGTDAYVIPWN
DVLYEFSDIYRVSQHVDHRHRHLGFIAWGVADKRCEANVKDFSTPYCLQK
ADELAVTTSLYSYPPSGSGEGLDNPKNGWKFAPGKDIDWRNKNVNYKKAL
KYAMEDTGIASYRFEKNQVCPDSKYKRVVVDWTGPMGASVNMDIPEMNNV
GGAGPRAPHIGVTYTKIVNGIKRKTTRHIFVDSVPYTRVKLGLDRVNAPK
PIVLDPEECVFNYDANDVRMIVI*
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mRNA from alignment at ScGOVlb_64:1245538..1246659-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7649.t1 ID=Gvermi7649.t1|Name=Gvermi7649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at ScGOVlb_64:1245538..1246659- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAGCTGCCATGTTTTTCTCCTTTATGACTTTGCTGGTGTGGGCAAC
TCTCGTGCAAGCCAACGATTATTCTGTGACTATTGGTGCAGACAATGGAG
TTACCACAAGGTACCAGATAGTTGTTCGTGCGTGCCAGGACTCGTCGTGC
TCTACAGAGACAACAACCGGGCGCACAGGTCGATCGACCAAAGTTCTGGC
AAAGTTCATCTCTGGCGATATCAGAAAAATTTCATTCCAGCTTTTGAATG
ATAGGGATCCGGAGGCGAACGGAGTAGATGTTAATCTCATCATCAGAGAC
GTATCGATCGAAGGTATTAGTATCTTCCCGTCCGACCTAGTGGAGCAAGG
CATTATTGCCGTCAAATGCACAAGAACCGGAGACGGAAGCCTTGTATCCA
ACTGTCCGAGGTCGTACCGCGGTACGGATGCCTATGTTATTCCATGGAAC
GACGTATTGTACGAGTTCAGTGATATTTATCGGGTTTCTCAGCACGTTGA
TCACAGACATCGGCACCTTGGTTTCATCGCCTGGGGTGTTGCAGACAAGA
GATGTGAAGCTAATGTCAAGGATTTCTCCACCCCGTACTGCCTCCAAAAG
GCTGATGAACTAGCAGTTACCACTTCACTCTACAGTTATCCTCCCAGCGG
AAGCGGAGAGGGCCTTGATAATCCCAAAAATGGCTGGAAATTTGCCCCTG
GAAAGGATATAGATTGGCGCAATAAGAATGTTAACTACAAGAAAGCGCTC
AAGTATGCCATGGAAGATACCGGAATAGCTAGTTACAGATTTGAAAAAAA
TCAGGTTTGCCCGGATTCCAAGTACAAGCGTGTTGTCGTAGACTGGACGG
GACCCATGGGTGCATCGGTCAACATGGACATACCCGAGATGAACAACGTT
GGTGGTGCTGGACCACGTGCTCCACATATTGGTGTGACGTACACTAAGAT
CGTCAACGGAATAAAGAGAAAGACTACTCGTCACATATTTGTTGACAGTG
TGCCATACACTCGGGTGAAGCTCGGCTTGGACCGTGTGAATGCCCCAAAG
CCGATTGTTCTCGATCCTGAAGAGTGCGTGTTCAATTACGACGCGAATGA
TGTAAGGATGATAGTGATATAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:1245538..1246659-

>Gvermi7649.t1 ID=Gvermi7649.t1|Name=Gvermi7649.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1122bp|location=Sequence derived from alignment at ScGOVlb_64:1245538..1246659- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAGCTGCCATGTTTTTCTCCTTTATGACTTTGCTGGTGTGGGCAAC
TCTCGTGCAAGCCAACGATTATTCTGTGACTATTGGTGCAGACAATGGAG
TTACCACAAGGTACCAGATAGTTGTTCGTGCGTGCCAGGACTCGTCGTGC
TCTACAGAGACAACAACCGGGCGCACAGGTCGATCGACCAAAGTTCTGGC
AAAGTTCATCTCTGGCGATATCAGAAAAATTTCATTCCAGCTTTTGAATG
ATAGGGATCCGGAGGCGAACGGAGTAGATGTTAATCTCATCATCAGAGAC
GTATCGATCGAAGGTATTAGTATCTTCCCGTCCGACCTAGTGGAGCAAGG
CATTATTGCCGTCAAATGCACAAGAACCGGAGACGGAAGCCTTGTATCCA
ACTGTCCGAGGTCGTACCGCGGTACGGATGCCTATGTTATTCCATGGAAC
GACGTATTGTACGAGTTCAGTGATATTTATCGGGTTTCTCAGCACGTTGA
TCACAGACATCGGCACCTTGGTTTCATCGCCTGGGGTGTTGCAGACAAGA
GATGTGAAGCTAATGTCAAGGATTTCTCCACCCCGTACTGCCTCCAAAAG
GCTGATGAACTAGCAGTTACCACTTCACTCTACAGTTATCCTCCCAGCGG
AAGCGGAGAGGGCCTTGATAATCCCAAAAATGGCTGGAAATTTGCCCCTG
GAAAGGATATAGATTGGCGCAATAAGAATGTTAACTACAAGAAAGCGCTC
AAGTATGCCATGGAAGATACCGGAATAGCTAGTTACAGATTTGAAAAAAA
TCAGGTTTGCCCGGATTCCAAGTACAAGCGTGTTGTCGTAGACTGGACGG
GACCCATGGGTGCATCGGTCAACATGGACATACCCGAGATGAACAACGTT
GGTGGTGCTGGACCACGTGCTCCACATATTGGTGTGACGTACACTAAGAT
CGTCAACGGAATAAAGAGAAAGACTACTCGTCACATATTTGTTGACAGTG
TGCCATACACTCGGGTGAAGCTCGGCTTGGACCGTGTGAATGCCCCAAAG
CCGATTGTTCTCGATCCTGAAGAGTGCGTGTTCAATTACGACGCGAATGA
TGTAAGGATGATAGTGATATAG
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