Gvermi7614.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7614.t1
Unique NameGvermi7614.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length628
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:459545..461428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7614Gvermi7614Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 459545..461428 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7614.t1.start1Gvermi7614.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 459545..459547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7614.t1.CDS1Gvermi7614.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 459545..461428 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7614.t1.exon1Gvermi7614.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 459545..461428 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7614.t1.stop1Gvermi7614.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 461426..461428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7614.t1Gvermi7614.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 459545..461428 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7614.t1 ID=Gvermi7614.t1|Name=Gvermi7614.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=628bp
MQHPVHTHATVNENLPSFLLMSSVAPYLFFRHVLLKPVPPTVRGLQLRAM
DTRIEVQLWNILKYVMLTLLLAPVVENAMSHITAWRNARLVNKHRGPIRL
KASALGNFALHQEVETLHASSRLWQLFFVLFALAIALPFEYSSGARTRLT
WSQRRSPSGSIPLAASDDLVLLALNDPKSVECVNPNRVANAGQFVSMQPL
EKKPPFLEGNVTSEKILQLLDNPIYTWESVTLRSRNGDSGLVLSAGGPDG
QLALIIDTMRSGILVADFGSGSLCKGLLDEVFLCYDMAGQFTLSQLTYSL
AAVSGSSMFLRNHFENAAQLYQFKKSMVTNSIGDPSVKENLVEQGLNESG
LQWLLRHQRVGEGRTFVIVTVRLNAQLKSVSCQSPGSVQIRPLTLRVGDP
QSVESEVVRVSAQSELKLVKAGSNLQTMLLTRVEDKDWDCAVDEIAGVCV
DAANEAFYFLTKFNEGHIHEYRTEFELDVTRSVESHADLAVLQLNIKNEI
LRGGFLASWDIQDLLSSFHTSEDGARVISRKAGTTVPVSAGVRVTGTIET
WAVLLYGCILFTFLGVLFFFRIKPLSSIDIETMYRQVVWQGEEAFQSSET
PGMAPMIVIGAAEEDSQGILTARYNSS*
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spliced messenger RNA

>Gvermi7614.t1 ID=Gvermi7614.t1|Name=Gvermi7614.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at ScGOVlb_64:459545..461428+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACATCCCGTGCATACCCATGCTACTGTGAACGAAAATCTGCCTTC
GTTCCTGCTCATGAGCTCAGTAGCGCCCTATCTCTTCTTCCGTCACGTAC
TCCTCAAGCCCGTGCCCCCCACCGTCCGTGGCCTTCAGCTTCGCGCCATG
GACACCAGAATCGAGGTGCAGCTTTGGAACATTCTGAAATACGTCATGCT
AACGCTGCTGCTCGCCCCAGTGGTCGAGAACGCTATGAGCCACATCACTG
CGTGGAGGAACGCCCGACTCGTTAACAAGCACCGAGGGCCCATTCGGCTA
AAGGCTTCCGCGCTGGGTAACTTTGCTCTGCACCAGGAGGTGGAAACGCT
CCACGCCTCCAGCAGGCTCTGGCAGCTGTTCTTTGTCCTGTTCGCACTGG
CCATCGCGCTCCCGTTCGAGTACAGCAGTGGCGCTCGGACGCGCCTTACT
TGGTCTCAACGCCGTTCTCCTTCCGGATCGATTCCGCTGGCGGCTTCCGA
TGATCTTGTTCTTCTGGCGCTCAATGATCCCAAAAGCGTCGAATGCGTCA
ATCCAAACCGAGTGGCAAACGCTGGCCAGTTCGTGTCTATGCAGCCATTG
GAAAAGAAGCCACCGTTTCTGGAGGGCAATGTAACATCGGAAAAGATCCT
TCAACTTCTAGATAACCCGATATACACTTGGGAGTCAGTGACTCTTAGAT
CTCGAAATGGAGATAGTGGCCTTGTACTTTCTGCCGGCGGTCCAGATGGA
CAACTGGCGTTGATTATCGACACCATGAGAAGCGGCATATTGGTTGCTGA
TTTTGGAAGTGGGTCGCTCTGCAAAGGGTTACTTGATGAAGTCTTCCTAT
GCTACGACATGGCAGGACAGTTCACGCTCTCGCAACTGACCTACTCCCTC
GCAGCTGTTAGCGGAAGTTCCATGTTTCTCAGGAACCATTTTGAAAATGC
CGCACAATTGTATCAATTTAAAAAGAGTATGGTCACCAACAGTATCGGAG
ATCCTTCTGTTAAGGAAAACCTGGTAGAACAGGGTTTAAATGAGTCGGGA
CTTCAATGGCTGTTACGTCATCAACGCGTTGGAGAAGGTCGCACTTTTGT
TATTGTTACCGTGAGGTTGAATGCCCAACTGAAATCTGTAAGCTGCCAAT
CTCCGGGCTCGGTGCAAATTCGTCCTCTTACATTGCGAGTCGGTGACCCT
CAAAGTGTCGAGTCCGAAGTGGTTCGTGTATCAGCCCAGAGCGAACTCAA
GTTAGTAAAAGCTGGGAGTAACCTGCAGACGATGCTACTTACACGAGTGG
AAGACAAAGACTGGGACTGCGCCGTCGATGAAATCGCTGGAGTGTGCGTG
GACGCCGCGAACGAAGCCTTCTATTTCTTGACCAAATTCAACGAAGGCCA
TATCCACGAATACCGAACAGAGTTTGAGTTAGATGTGACGCGAAGTGTGG
AAAGTCACGCCGATCTTGCCGTTTTGCAGTTGAATATCAAAAACGAGATT
CTGCGAGGTGGTTTTTTGGCTTCTTGGGACATACAAGACTTACTATCGTC
CTTTCACACATCGGAAGACGGGGCGAGGGTAATCTCGCGAAAAGCCGGGA
CAACGGTTCCTGTTTCCGCTGGAGTACGTGTGACGGGAACCATAGAAACT
TGGGCGGTACTTTTATATGGGTGTATTCTATTCACCTTTCTGGGTGTTTT
GTTTTTTTTTCGTATCAAACCTCTATCAAGTATTGACATTGAAACAATGT
ATCGGCAGGTGGTGTGGCAGGGCGAAGAAGCTTTTCAAAGCTCAGAAACG
CCAGGTATGGCACCGATGATTGTGATTGGGGCTGCCGAGGAAGATAGTCA
AGGAATATTGACCGCAAGATACAACAGTTCCTGA
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protein sequence of Gvermi7614.t1

>Gvermi7614.t1 ID=Gvermi7614.t1|Name=Gvermi7614.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=628bp
MQHPVHTHATVNENLPSFLLMSSVAPYLFFRHVLLKPVPPTVRGLQLRAM
DTRIEVQLWNILKYVMLTLLLAPVVENAMSHITAWRNARLVNKHRGPIRL
KASALGNFALHQEVETLHASSRLWQLFFVLFALAIALPFEYSSGARTRLT
WSQRRSPSGSIPLAASDDLVLLALNDPKSVECVNPNRVANAGQFVSMQPL
EKKPPFLEGNVTSEKILQLLDNPIYTWESVTLRSRNGDSGLVLSAGGPDG
QLALIIDTMRSGILVADFGSGSLCKGLLDEVFLCYDMAGQFTLSQLTYSL
AAVSGSSMFLRNHFENAAQLYQFKKSMVTNSIGDPSVKENLVEQGLNESG
LQWLLRHQRVGEGRTFVIVTVRLNAQLKSVSCQSPGSVQIRPLTLRVGDP
QSVESEVVRVSAQSELKLVKAGSNLQTMLLTRVEDKDWDCAVDEIAGVCV
DAANEAFYFLTKFNEGHIHEYRTEFELDVTRSVESHADLAVLQLNIKNEI
LRGGFLASWDIQDLLSSFHTSEDGARVISRKAGTTVPVSAGVRVTGTIET
WAVLLYGCILFTFLGVLFFFRIKPLSSIDIETMYRQVVWQGEEAFQSSET
PGMAPMIVIGAAEEDSQGILTARYNSS*
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mRNA from alignment at ScGOVlb_64:459545..461428+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7614.t1 ID=Gvermi7614.t1|Name=Gvermi7614.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at ScGOVlb_64:459545..461428+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACATCCCGTGCATACCCATGCTACTGTGAACGAAAATCTGCCTTC
GTTCCTGCTCATGAGCTCAGTAGCGCCCTATCTCTTCTTCCGTCACGTAC
TCCTCAAGCCCGTGCCCCCCACCGTCCGTGGCCTTCAGCTTCGCGCCATG
GACACCAGAATCGAGGTGCAGCTTTGGAACATTCTGAAATACGTCATGCT
AACGCTGCTGCTCGCCCCAGTGGTCGAGAACGCTATGAGCCACATCACTG
CGTGGAGGAACGCCCGACTCGTTAACAAGCACCGAGGGCCCATTCGGCTA
AAGGCTTCCGCGCTGGGTAACTTTGCTCTGCACCAGGAGGTGGAAACGCT
CCACGCCTCCAGCAGGCTCTGGCAGCTGTTCTTTGTCCTGTTCGCACTGG
CCATCGCGCTCCCGTTCGAGTACAGCAGTGGCGCTCGGACGCGCCTTACT
TGGTCTCAACGCCGTTCTCCTTCCGGATCGATTCCGCTGGCGGCTTCCGA
TGATCTTGTTCTTCTGGCGCTCAATGATCCCAAAAGCGTCGAATGCGTCA
ATCCAAACCGAGTGGCAAACGCTGGCCAGTTCGTGTCTATGCAGCCATTG
GAAAAGAAGCCACCGTTTCTGGAGGGCAATGTAACATCGGAAAAGATCCT
TCAACTTCTAGATAACCCGATATACACTTGGGAGTCAGTGACTCTTAGAT
CTCGAAATGGAGATAGTGGCCTTGTACTTTCTGCCGGCGGTCCAGATGGA
CAACTGGCGTTGATTATCGACACCATGAGAAGCGGCATATTGGTTGCTGA
TTTTGGAAGTGGGTCGCTCTGCAAAGGGTTACTTGATGAAGTCTTCCTAT
GCTACGACATGGCAGGACAGTTCACGCTCTCGCAACTGACCTACTCCCTC
GCAGCTGTTAGCGGAAGTTCCATGTTTCTCAGGAACCATTTTGAAAATGC
CGCACAATTGTATCAATTTAAAAAGAGTATGGTCACCAACAGTATCGGAG
ATCCTTCTGTTAAGGAAAACCTGGTAGAACAGGGTTTAAATGAGTCGGGA
CTTCAATGGCTGTTACGTCATCAACGCGTTGGAGAAGGTCGCACTTTTGT
TATTGTTACCGTGAGGTTGAATGCCCAACTGAAATCTGTAAGCTGCCAAT
CTCCGGGCTCGGTGCAAATTCGTCCTCTTACATTGCGAGTCGGTGACCCT
CAAAGTGTCGAGTCCGAAGTGGTTCGTGTATCAGCCCAGAGCGAACTCAA
GTTAGTAAAAGCTGGGAGTAACCTGCAGACGATGCTACTTACACGAGTGG
AAGACAAAGACTGGGACTGCGCCGTCGATGAAATCGCTGGAGTGTGCGTG
GACGCCGCGAACGAAGCCTTCTATTTCTTGACCAAATTCAACGAAGGCCA
TATCCACGAATACCGAACAGAGTTTGAGTTAGATGTGACGCGAAGTGTGG
AAAGTCACGCCGATCTTGCCGTTTTGCAGTTGAATATCAAAAACGAGATT
CTGCGAGGTGGTTTTTTGGCTTCTTGGGACATACAAGACTTACTATCGTC
CTTTCACACATCGGAAGACGGGGCGAGGGTAATCTCGCGAAAAGCCGGGA
CAACGGTTCCTGTTTCCGCTGGAGTACGTGTGACGGGAACCATAGAAACT
TGGGCGGTACTTTTATATGGGTGTATTCTATTCACCTTTCTGGGTGTTTT
GTTTTTTTTTCGTATCAAACCTCTATCAAGTATTGACATTGAAACAATGT
ATCGGCAGGTGGTGTGGCAGGGCGAAGAAGCTTTTCAAAGCTCAGAAACG
CCAGGTATGGCACCGATGATTGTGATTGGGGCTGCCGAGGAAGATAGTCA
AGGAATATTGACCGCAAGATACAACAGTTCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:459545..461428+

>Gvermi7614.t1 ID=Gvermi7614.t1|Name=Gvermi7614.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1884bp|location=Sequence derived from alignment at ScGOVlb_64:459545..461428+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACATCCCGTGCATACCCATGCTACTGTGAACGAAAATCTGCCTTC
GTTCCTGCTCATGAGCTCAGTAGCGCCCTATCTCTTCTTCCGTCACGTAC
TCCTCAAGCCCGTGCCCCCCACCGTCCGTGGCCTTCAGCTTCGCGCCATG
GACACCAGAATCGAGGTGCAGCTTTGGAACATTCTGAAATACGTCATGCT
AACGCTGCTGCTCGCCCCAGTGGTCGAGAACGCTATGAGCCACATCACTG
CGTGGAGGAACGCCCGACTCGTTAACAAGCACCGAGGGCCCATTCGGCTA
AAGGCTTCCGCGCTGGGTAACTTTGCTCTGCACCAGGAGGTGGAAACGCT
CCACGCCTCCAGCAGGCTCTGGCAGCTGTTCTTTGTCCTGTTCGCACTGG
CCATCGCGCTCCCGTTCGAGTACAGCAGTGGCGCTCGGACGCGCCTTACT
TGGTCTCAACGCCGTTCTCCTTCCGGATCGATTCCGCTGGCGGCTTCCGA
TGATCTTGTTCTTCTGGCGCTCAATGATCCCAAAAGCGTCGAATGCGTCA
ATCCAAACCGAGTGGCAAACGCTGGCCAGTTCGTGTCTATGCAGCCATTG
GAAAAGAAGCCACCGTTTCTGGAGGGCAATGTAACATCGGAAAAGATCCT
TCAACTTCTAGATAACCCGATATACACTTGGGAGTCAGTGACTCTTAGAT
CTCGAAATGGAGATAGTGGCCTTGTACTTTCTGCCGGCGGTCCAGATGGA
CAACTGGCGTTGATTATCGACACCATGAGAAGCGGCATATTGGTTGCTGA
TTTTGGAAGTGGGTCGCTCTGCAAAGGGTTACTTGATGAAGTCTTCCTAT
GCTACGACATGGCAGGACAGTTCACGCTCTCGCAACTGACCTACTCCCTC
GCAGCTGTTAGCGGAAGTTCCATGTTTCTCAGGAACCATTTTGAAAATGC
CGCACAATTGTATCAATTTAAAAAGAGTATGGTCACCAACAGTATCGGAG
ATCCTTCTGTTAAGGAAAACCTGGTAGAACAGGGTTTAAATGAGTCGGGA
CTTCAATGGCTGTTACGTCATCAACGCGTTGGAGAAGGTCGCACTTTTGT
TATTGTTACCGTGAGGTTGAATGCCCAACTGAAATCTGTAAGCTGCCAAT
CTCCGGGCTCGGTGCAAATTCGTCCTCTTACATTGCGAGTCGGTGACCCT
CAAAGTGTCGAGTCCGAAGTGGTTCGTGTATCAGCCCAGAGCGAACTCAA
GTTAGTAAAAGCTGGGAGTAACCTGCAGACGATGCTACTTACACGAGTGG
AAGACAAAGACTGGGACTGCGCCGTCGATGAAATCGCTGGAGTGTGCGTG
GACGCCGCGAACGAAGCCTTCTATTTCTTGACCAAATTCAACGAAGGCCA
TATCCACGAATACCGAACAGAGTTTGAGTTAGATGTGACGCGAAGTGTGG
AAAGTCACGCCGATCTTGCCGTTTTGCAGTTGAATATCAAAAACGAGATT
CTGCGAGGTGGTTTTTTGGCTTCTTGGGACATACAAGACTTACTATCGTC
CTTTCACACATCGGAAGACGGGGCGAGGGTAATCTCGCGAAAAGCCGGGA
CAACGGTTCCTGTTTCCGCTGGAGTACGTGTGACGGGAACCATAGAAACT
TGGGCGGTACTTTTATATGGGTGTATTCTATTCACCTTTCTGGGTGTTTT
GTTTTTTTTTCGTATCAAACCTCTATCAAGTATTGACATTGAAACAATGT
ATCGGCAGGTGGTGTGGCAGGGCGAAGAAGCTTTTCAAAGCTCAGAAACG
CCAGGTATGGCACCGATGATTGTGATTGGGGCTGCCGAGGAAGATAGTCA
AGGAATATTGACCGCAAGATACAACAGTTCCTGA
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