Gvermi7670.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7670.t1
Unique NameGvermi7670.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1716087..1716971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LM92
PFAMsCBM_1,LPMO_10
Max annot lvl2759|Eukaryota
Evalue3.92e-20
EggNOG OGs2CZUJ@1|root,2SBQR@2759|Eukaryota
DescriptionFungal-type cellulose-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7670Gvermi7670Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1716087..1716971 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7670.t1.stop1Gvermi7670.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1716087..1716089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7670.t1.CDS1Gvermi7670.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1716087..1716971 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7670.t1.exon1Gvermi7670.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1716087..1716971 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7670.t1.start1Gvermi7670.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1716969..1716971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7670.t1Gvermi7670.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1716087..1716971 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7670.t1 ID=Gvermi7670.t1|Name=Gvermi7670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=295bp
MLFVLLAALVARVRAHAMMCTPRQRAAYSSVKCGYDLYVPNAVTDHCAHC
LNGGTVETVKANLPPVGWRPYAPTQDFYGTADRAGLCGDPKYERHHMLGG
VFMPFASAPVVATWAAGSFIDFEAAVDTNHNGYFEFFLCNLDACAAPDLD
ERCFEQRHCVRLNRVPHPACESPSPATSTECGPIDVAHPSRWYVPCRKTA
HVGVHLMGGRAGTMRYQLPPNLRCEHCVVQWYWATANSCAPPGFKQYIVN
YGFPFGTTCESDGGTRGTYRADMAECGGRLVPEEFWTCADVRIV*
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spliced messenger RNA

>Gvermi7670.t1 ID=Gvermi7670.t1|Name=Gvermi7670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_64:1716087..1716971- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTCGTTCTGCTCGCCGCCCTCGTGGCGCGCGTGCGTGCGCATGC
CATGATGTGCACCCCGCGTCAGCGGGCAGCATACTCCTCCGTCAAGTGCG
GCTACGATCTATACGTGCCCAACGCCGTCACCGACCACTGCGCTCACTGC
CTCAACGGCGGCACCGTCGAAACCGTCAAGGCCAACCTGCCGCCGGTCGG
TTGGCGCCCCTATGCACCGACCCAAGACTTCTACGGCACGGCCGACCGCG
CGGGTTTGTGCGGCGACCCAAAGTACGAGCGCCACCATATGCTGGGCGGC
GTCTTCATGCCGTTCGCGAGCGCGCCCGTCGTCGCCACGTGGGCTGCCGG
CTCGTTCATCGACTTTGAGGCCGCGGTGGACACCAACCACAACGGCTATT
TCGAATTCTTCCTCTGCAACCTGGACGCGTGCGCCGCGCCGGACCTGGAC
GAGCGCTGCTTTGAGCAGCGCCACTGCGTGCGCCTCAACCGCGTGCCGCA
CCCCGCGTGCGAGAGCCCGTCGCCGGCTACCTCTACTGAGTGCGGGCCCA
TCGACGTCGCGCATCCGTCGCGCTGGTACGTGCCGTGCCGCAAGACCGCG
CACGTGGGCGTGCATCTCATGGGCGGCCGGGCGGGCACCATGCGCTACCA
GCTACCGCCCAATCTACGCTGCGAACACTGCGTCGTGCAGTGGTATTGGG
CCACAGCCAACTCATGCGCCCCGCCCGGCTTCAAGCAGTACATTGTCAAC
TACGGCTTCCCGTTCGGCACCACCTGCGAGTCGGATGGCGGCACGCGCGG
CACCTACCGCGCCGACATGGCCGAGTGCGGTGGCCGCCTGGTGCCGGAGG
AATTTTGGACGTGTGCCGATGTGCGCATAGTCTGA
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protein sequence of Gvermi7670.t1

>Gvermi7670.t1 ID=Gvermi7670.t1|Name=Gvermi7670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=295bp
MLFVLLAALVARVRAHAMMCTPRQRAAYSSVKCGYDLYVPNAVTDHCAHC
LNGGTVETVKANLPPVGWRPYAPTQDFYGTADRAGLCGDPKYERHHMLGG
VFMPFASAPVVATWAAGSFIDFEAAVDTNHNGYFEFFLCNLDACAAPDLD
ERCFEQRHCVRLNRVPHPACESPSPATSTECGPIDVAHPSRWYVPCRKTA
HVGVHLMGGRAGTMRYQLPPNLRCEHCVVQWYWATANSCAPPGFKQYIVN
YGFPFGTTCESDGGTRGTYRADMAECGGRLVPEEFWTCADVRIV*
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mRNA from alignment at ScGOVlb_64:1716087..1716971-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7670.t1 ID=Gvermi7670.t1|Name=Gvermi7670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_64:1716087..1716971- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTTTCGTTCTGCTCGCCGCCCTCGTGGCGCGCGTGCGTGCGCATGC
CATGATGTGCACCCCGCGTCAGCGGGCAGCATACTCCTCCGTCAAGTGCG
GCTACGATCTATACGTGCCCAACGCCGTCACCGACCACTGCGCTCACTGC
CTCAACGGCGGCACCGTCGAAACCGTCAAGGCCAACCTGCCGCCGGTCGG
TTGGCGCCCCTATGCACCGACCCAAGACTTCTACGGCACGGCCGACCGCG
CGGGTTTGTGCGGCGACCCAAAGTACGAGCGCCACCATATGCTGGGCGGC
GTCTTCATGCCGTTCGCGAGCGCGCCCGTCGTCGCCACGTGGGCTGCCGG
CTCGTTCATCGACTTTGAGGCCGCGGTGGACACCAACCACAACGGCTATT
TCGAATTCTTCCTCTGCAACCTGGACGCGTGCGCCGCGCCGGACCTGGAC
GAGCGCTGCTTTGAGCAGCGCCACTGCGTGCGCCTCAACCGCGTGCCGCA
CCCCGCGTGCGAGAGCCCGTCGCCGGCTACCTCTACTGAGTGCGGGCCCA
TCGACGTCGCGCATCCGTCGCGCTGGTACGTGCCGTGCCGCAAGACCGCG
CACGTGGGCGTGCATCTCATGGGCGGCCGGGCGGGCACCATGCGCTACCA
GCTACCGCCCAATCTACGCTGCGAACACTGCGTCGTGCAGTGGTATTGGG
CCACAGCCAACTCATGCGCCCCGCCCGGCTTCAAGCAGTACATTGTCAAC
TACGGCTTCCCGTTCGGCACCACCTGCGAGTCGGATGGCGGCACGCGCGG
CACCTACCGCGCCGACATGGCCGAGTGCGGTGGCCGCCTGGTGCCGGAGG
AATTTTGGACGTGTGCCGATGTGCGCATAGTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1716087..1716971-

>Gvermi7670.t1 ID=Gvermi7670.t1|Name=Gvermi7670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=885bp|location=Sequence derived from alignment at ScGOVlb_64:1716087..1716971- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTTTCGTTCTGCTCGCCGCCCTCGTGGCGCGCGTGCGTGCGCATGC
CATGATGTGCACCCCGCGTCAGCGGGCAGCATACTCCTCCGTCAAGTGCG
GCTACGATCTATACGTGCCCAACGCCGTCACCGACCACTGCGCTCACTGC
CTCAACGGCGGCACCGTCGAAACCGTCAAGGCCAACCTGCCGCCGGTCGG
TTGGCGCCCCTATGCACCGACCCAAGACTTCTACGGCACGGCCGACCGCG
CGGGTTTGTGCGGCGACCCAAAGTACGAGCGCCACCATATGCTGGGCGGC
GTCTTCATGCCGTTCGCGAGCGCGCCCGTCGTCGCCACGTGGGCTGCCGG
CTCGTTCATCGACTTTGAGGCCGCGGTGGACACCAACCACAACGGCTATT
TCGAATTCTTCCTCTGCAACCTGGACGCGTGCGCCGCGCCGGACCTGGAC
GAGCGCTGCTTTGAGCAGCGCCACTGCGTGCGCCTCAACCGCGTGCCGCA
CCCCGCGTGCGAGAGCCCGTCGCCGGCTACCTCTACTGAGTGCGGGCCCA
TCGACGTCGCGCATCCGTCGCGCTGGTACGTGCCGTGCCGCAAGACCGCG
CACGTGGGCGTGCATCTCATGGGCGGCCGGGCGGGCACCATGCGCTACCA
GCTACCGCCCAATCTACGCTGCGAACACTGCGTCGTGCAGTGGTATTGGG
CCACAGCCAACTCATGCGCCCCGCCCGGCTTCAAGCAGTACATTGTCAAC
TACGGCTTCCCGTTCGGCACCACCTGCGAGTCGGATGGCGGCACGCGCGG
CACCTACCGCGCCGACATGGCCGAGTGCGGTGGCCGCCTGGTGCCGGAGG
AATTTTGGACGTGTGCCGATGTGCGCATAGTCTGA
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