Gvermi7671.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7671.t1
Unique NameGvermi7671.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1787383..1788831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog504472.Slin_5485
PFAMsCytochrom_C,GSDH
Max annot lvl976|Bacteroidetes
Evalue1.05e-39
EggNOG OGsCOG2010@1|root,COG2133@1|root,COG2010@2|Bacteria,COG2133@2|Bacteria,4NIKG@976|Bacteroidetes,47MEK@768503|Cytophagia
DescriptionGlucose / Sorbosone dehydrogenase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7671Gvermi7671Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1787383..1788831 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7671.t1.stop1Gvermi7671.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1787383..1787385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7671.t1.CDS1Gvermi7671.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1787383..1788831 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7671.t1.exon1Gvermi7671.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1787383..1788831 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7671.t1.start1Gvermi7671.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1788829..1788831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7671.t1Gvermi7671.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1787383..1788831 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7671.t1 ID=Gvermi7671.t1|Name=Gvermi7671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=483bp
MRPSVLVLVSVSTFFALCRAANPVTEPILQGELNVYTKRFAKIPDRNGAA
AQITCIIPYLWDVYVCTANAVYKISRSGEVSLFIDVENAIATQTDRFLNT
FNRMHGGVRSIAFHPTYAISGLFYISAMESRPRDPSQFNYVSDSSTPINA
DSVLLEFKYDFAMRSVDESSYRNVFRIGMPVFDHPIKQMTFRGPHLYIAH
GDGSVQSATAGGGQNNDALGKILRIDPIQRFGRPYLVPLSNPFVGKTSMP
DEVYAYGFRNPHHMCFGRDGTFYVADAGRDNVEEVNLVEAGGNYGWSMRE
GTFVHLASGGLLTGVADLPADDEKYGYIYPAAQVGHEGPVGAGFVGQAIA
GGCPVENGSPMSGNYYYSDFPKSGNLYYSGISELKRAITRGPPSLLTQAR
TRQAKILFEKEGRVLKFNSLGDVVRFDESLSNGARVDVRFGRNSRGELLW
SSKANGRVYLFTSSQVGGPGGLEDSEINDADD*
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spliced messenger RNA

>Gvermi7671.t1 ID=Gvermi7671.t1|Name=Gvermi7671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at ScGOVlb_64:1787383..1788831- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCTTCAGTCCTAGTTCTTGTTTCCGTATCTACATTTTTTGCGCT
CTGCCGTGCAGCCAATCCCGTGACCGAGCCAATTCTCCAAGGCGAGCTCA
ATGTTTACACAAAGCGTTTTGCAAAAATTCCGGACAGAAACGGAGCCGCT
GCACAGATAACATGTATTATACCTTATCTTTGGGACGTTTATGTATGCAC
GGCAAATGCCGTGTACAAAATATCACGAAGCGGAGAGGTGTCACTGTTCA
TTGATGTAGAGAATGCAATTGCGACACAAACAGATCGCTTTTTGAACACG
TTCAACAGGATGCATGGCGGAGTTCGTAGCATCGCGTTCCATCCCACGTA
CGCTATCAGCGGTCTGTTCTACATCTCTGCAATGGAATCGCGTCCCCGTG
ATCCATCCCAGTTTAATTATGTGTCAGACTCTTCGACCCCCATCAACGCC
GACAGCGTGCTGCTCGAGTTCAAGTATGACTTTGCCATGCGCTCAGTTGA
CGAAAGTTCGTACAGAAATGTGTTTCGCATCGGTATGCCGGTGTTCGATC
ATCCAATCAAGCAAATGACGTTTCGTGGGCCTCATTTGTATATAGCGCAC
GGAGACGGCTCAGTGCAATCTGCGACGGCGGGCGGCGGACAGAACAATGA
TGCGCTTGGGAAAATCTTGCGTATCGACCCTATACAGCGCTTTGGGCGGC
CGTATCTGGTGCCTCTATCGAACCCGTTTGTGGGGAAGACATCAATGCCC
GACGAAGTGTACGCATATGGTTTCCGAAATCCTCATCACATGTGCTTTGG
TCGCGACGGGACCTTTTACGTCGCGGACGCTGGGCGCGATAATGTGGAAG
AGGTAAATCTGGTTGAGGCGGGGGGCAATTATGGGTGGTCGATGCGAGAA
GGGACTTTCGTGCATCTGGCAAGCGGCGGACTGCTGACTGGAGTGGCAGA
CCTGCCTGCAGATGACGAAAAGTACGGATATATTTATCCGGCGGCGCAGG
TGGGGCATGAGGGGCCGGTTGGGGCAGGCTTTGTCGGACAGGCAATCGCG
GGCGGATGTCCGGTAGAAAACGGGTCGCCGATGTCTGGAAATTACTACTA
CTCGGACTTTCCAAAGAGCGGCAACCTGTACTACTCAGGCATCTCGGAGC
TCAAGCGTGCGATTACGAGAGGCCCCCCGTCGTTGCTCACGCAGGCGCGA
ACGCGGCAGGCGAAAATTCTGTTTGAAAAGGAAGGGCGTGTGTTGAAATT
TAATTCGTTGGGTGACGTGGTGCGCTTCGACGAAAGCTTGAGCAATGGAG
CACGCGTGGACGTGCGCTTTGGGCGCAACAGCCGCGGGGAACTACTGTGG
TCCAGCAAGGCAAATGGTCGCGTTTACTTGTTCACGTCGTCGCAGGTTGG
GGGTCCCGGCGGATTGGAAGATTCTGAAATCAACGACGCCGACGACTGA
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protein sequence of Gvermi7671.t1

>Gvermi7671.t1 ID=Gvermi7671.t1|Name=Gvermi7671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=483bp
MRPSVLVLVSVSTFFALCRAANPVTEPILQGELNVYTKRFAKIPDRNGAA
AQITCIIPYLWDVYVCTANAVYKISRSGEVSLFIDVENAIATQTDRFLNT
FNRMHGGVRSIAFHPTYAISGLFYISAMESRPRDPSQFNYVSDSSTPINA
DSVLLEFKYDFAMRSVDESSYRNVFRIGMPVFDHPIKQMTFRGPHLYIAH
GDGSVQSATAGGGQNNDALGKILRIDPIQRFGRPYLVPLSNPFVGKTSMP
DEVYAYGFRNPHHMCFGRDGTFYVADAGRDNVEEVNLVEAGGNYGWSMRE
GTFVHLASGGLLTGVADLPADDEKYGYIYPAAQVGHEGPVGAGFVGQAIA
GGCPVENGSPMSGNYYYSDFPKSGNLYYSGISELKRAITRGPPSLLTQAR
TRQAKILFEKEGRVLKFNSLGDVVRFDESLSNGARVDVRFGRNSRGELLW
SSKANGRVYLFTSSQVGGPGGLEDSEINDADD*
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mRNA from alignment at ScGOVlb_64:1787383..1788831-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7671.t1 ID=Gvermi7671.t1|Name=Gvermi7671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at ScGOVlb_64:1787383..1788831- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCCTTCAGTCCTAGTTCTTGTTTCCGTATCTACATTTTTTGCGCT
CTGCCGTGCAGCCAATCCCGTGACCGAGCCAATTCTCCAAGGCGAGCTCA
ATGTTTACACAAAGCGTTTTGCAAAAATTCCGGACAGAAACGGAGCCGCT
GCACAGATAACATGTATTATACCTTATCTTTGGGACGTTTATGTATGCAC
GGCAAATGCCGTGTACAAAATATCACGAAGCGGAGAGGTGTCACTGTTCA
TTGATGTAGAGAATGCAATTGCGACACAAACAGATCGCTTTTTGAACACG
TTCAACAGGATGCATGGCGGAGTTCGTAGCATCGCGTTCCATCCCACGTA
CGCTATCAGCGGTCTGTTCTACATCTCTGCAATGGAATCGCGTCCCCGTG
ATCCATCCCAGTTTAATTATGTGTCAGACTCTTCGACCCCCATCAACGCC
GACAGCGTGCTGCTCGAGTTCAAGTATGACTTTGCCATGCGCTCAGTTGA
CGAAAGTTCGTACAGAAATGTGTTTCGCATCGGTATGCCGGTGTTCGATC
ATCCAATCAAGCAAATGACGTTTCGTGGGCCTCATTTGTATATAGCGCAC
GGAGACGGCTCAGTGCAATCTGCGACGGCGGGCGGCGGACAGAACAATGA
TGCGCTTGGGAAAATCTTGCGTATCGACCCTATACAGCGCTTTGGGCGGC
CGTATCTGGTGCCTCTATCGAACCCGTTTGTGGGGAAGACATCAATGCCC
GACGAAGTGTACGCATATGGTTTCCGAAATCCTCATCACATGTGCTTTGG
TCGCGACGGGACCTTTTACGTCGCGGACGCTGGGCGCGATAATGTGGAAG
AGGTAAATCTGGTTGAGGCGGGGGGCAATTATGGGTGGTCGATGCGAGAA
GGGACTTTCGTGCATCTGGCAAGCGGCGGACTGCTGACTGGAGTGGCAGA
CCTGCCTGCAGATGACGAAAAGTACGGATATATTTATCCGGCGGCGCAGG
TGGGGCATGAGGGGCCGGTTGGGGCAGGCTTTGTCGGACAGGCAATCGCG
GGCGGATGTCCGGTAGAAAACGGGTCGCCGATGTCTGGAAATTACTACTA
CTCGGACTTTCCAAAGAGCGGCAACCTGTACTACTCAGGCATCTCGGAGC
TCAAGCGTGCGATTACGAGAGGCCCCCCGTCGTTGCTCACGCAGGCGCGA
ACGCGGCAGGCGAAAATTCTGTTTGAAAAGGAAGGGCGTGTGTTGAAATT
TAATTCGTTGGGTGACGTGGTGCGCTTCGACGAAAGCTTGAGCAATGGAG
CACGCGTGGACGTGCGCTTTGGGCGCAACAGCCGCGGGGAACTACTGTGG
TCCAGCAAGGCAAATGGTCGCGTTTACTTGTTCACGTCGTCGCAGGTTGG
GGGTCCCGGCGGATTGGAAGATTCTGAAATCAACGACGCCGACGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1787383..1788831-

>Gvermi7671.t1 ID=Gvermi7671.t1|Name=Gvermi7671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1449bp|location=Sequence derived from alignment at ScGOVlb_64:1787383..1788831- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCCTTCAGTCCTAGTTCTTGTTTCCGTATCTACATTTTTTGCGCT
CTGCCGTGCAGCCAATCCCGTGACCGAGCCAATTCTCCAAGGCGAGCTCA
ATGTTTACACAAAGCGTTTTGCAAAAATTCCGGACAGAAACGGAGCCGCT
GCACAGATAACATGTATTATACCTTATCTTTGGGACGTTTATGTATGCAC
GGCAAATGCCGTGTACAAAATATCACGAAGCGGAGAGGTGTCACTGTTCA
TTGATGTAGAGAATGCAATTGCGACACAAACAGATCGCTTTTTGAACACG
TTCAACAGGATGCATGGCGGAGTTCGTAGCATCGCGTTCCATCCCACGTA
CGCTATCAGCGGTCTGTTCTACATCTCTGCAATGGAATCGCGTCCCCGTG
ATCCATCCCAGTTTAATTATGTGTCAGACTCTTCGACCCCCATCAACGCC
GACAGCGTGCTGCTCGAGTTCAAGTATGACTTTGCCATGCGCTCAGTTGA
CGAAAGTTCGTACAGAAATGTGTTTCGCATCGGTATGCCGGTGTTCGATC
ATCCAATCAAGCAAATGACGTTTCGTGGGCCTCATTTGTATATAGCGCAC
GGAGACGGCTCAGTGCAATCTGCGACGGCGGGCGGCGGACAGAACAATGA
TGCGCTTGGGAAAATCTTGCGTATCGACCCTATACAGCGCTTTGGGCGGC
CGTATCTGGTGCCTCTATCGAACCCGTTTGTGGGGAAGACATCAATGCCC
GACGAAGTGTACGCATATGGTTTCCGAAATCCTCATCACATGTGCTTTGG
TCGCGACGGGACCTTTTACGTCGCGGACGCTGGGCGCGATAATGTGGAAG
AGGTAAATCTGGTTGAGGCGGGGGGCAATTATGGGTGGTCGATGCGAGAA
GGGACTTTCGTGCATCTGGCAAGCGGCGGACTGCTGACTGGAGTGGCAGA
CCTGCCTGCAGATGACGAAAAGTACGGATATATTTATCCGGCGGCGCAGG
TGGGGCATGAGGGGCCGGTTGGGGCAGGCTTTGTCGGACAGGCAATCGCG
GGCGGATGTCCGGTAGAAAACGGGTCGCCGATGTCTGGAAATTACTACTA
CTCGGACTTTCCAAAGAGCGGCAACCTGTACTACTCAGGCATCTCGGAGC
TCAAGCGTGCGATTACGAGAGGCCCCCCGTCGTTGCTCACGCAGGCGCGA
ACGCGGCAGGCGAAAATTCTGTTTGAAAAGGAAGGGCGTGTGTTGAAATT
TAATTCGTTGGGTGACGTGGTGCGCTTCGACGAAAGCTTGAGCAATGGAG
CACGCGTGGACGTGCGCTTTGGGCGCAACAGCCGCGGGGAACTACTGTGG
TCCAGCAAGGCAAATGGTCGCGTTTACTTGTTCACGTCGTCGCAGGTTGG
GGGTCCCGGCGGATTGGAAGATTCTGAAATCAACGACGCCGACGACTGA
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