Gvermi7622.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7622.t1
Unique Name	Gvermi7622.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:609406..610572 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_04553T0
Max annot lvl	4751\|Fungi
Evalue	1.61e-07
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,3ARBF@33154\|Opisthokonta,3PFVF@4751\|Fungi
Description	Allomyces macrogynus ATCC 38327
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7622	Gvermi7622	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 609406..610572 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7622.t1.start1	Gvermi7622.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 609406..609408 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7622.t1.CDS1	Gvermi7622.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 609406..610572 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7622.t1.exon1	Gvermi7622.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 609406..610572 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7622.t1.stop1	Gvermi7622.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 610570..610572 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7622.t1	Gvermi7622.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 609406..610572 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:609406..610572+
coding sequence from alignment at ScGOVlb_64:609406..610572+

mRNA sequence

>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=389bp
MQKKSTVLFLITVHAAVCAVEAHQAIAYPWPISNDGACRIGKFKNCPGPC
PTGDLRLDQTPDSPSITVRRGQKLDINIKRNNHAGGFTRWAMVHVHHMHD
KKKHEQAAFYYTCGDQRITSCNANNRNRDCTYDRRRKYYRHQIRIPEVYG
NGVYVLGYAWYGGTQENGQNGDFGDYYDCMYVQVKGGPYKKWYQPTFKMG
DSTTGKNGLCRARTNWIGDCWKEPCRHKKKARNLIPWQFSKGKKPGKLSN
VAFRKPYTIRNAGKTAPRLQGISIRLADNPGQVKASSKFGSVAKLVVQKN
SRITATCDVSGAVRHVIFYRNGLPIRKDEVGPFGIAGVYWIKRRGKFILR
FHPWKVALVSDFYSLSCVVYGKDGSVQYAKLDVQQTLK*

spliced messenger RNA

>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at ScGOVlb_64:609406..610572+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGAAAAGCACTGTGCTGTTCTTGATTACGGTCCATGCTGCAGT
ATGCGCTGTCGAAGCTCATCAGGCAATTGCGTATCCCTGGCCCATATCGA
ATGACGGAGCATGCCGCATTGGAAAGTTTAAGAACTGTCCTGGTCCGTGT
CCAACTGGCGATCTTCGCCTAGATCAAACACCAGACTCGCCATCTATCAC
TGTTCGTCGTGGTCAGAAACTTGACATAAACATCAAACGCAACAATCATG
CAGGTGGCTTTACAAGGTGGGCCATGGTGCACGTCCATCACATGCACGAT
AAAAAGAAACATGAACAAGCAGCTTTTTACTACACATGCGGTGATCAACG
GATCACGAGCTGTAACGCGAATAACCGGAATCGGGACTGTACGTATGACA
GACGAAGAAAATACTACCGACATCAAATTCGCATCCCGGAAGTGTATGGA
AACGGAGTATACGTGCTAGGCTATGCTTGGTACGGGGGAACGCAGGAAAA
TGGGCAAAACGGGGATTTTGGCGACTACTATGATTGCATGTATGTTCAAG
TGAAAGGTGGCCCGTACAAAAAGTGGTATCAACCCACATTTAAAATGGGG
GATTCAACGACCGGAAAGAATGGACTTTGTAGAGCTCGGACCAACTGGAT
AGGGGATTGCTGGAAGGAACCTTGCAGACATAAAAAGAAAGCGCGGAACC
TCATCCCTTGGCAATTTTCCAAAGGAAAAAAGCCGGGCAAACTTTCGAAT
GTCGCGTTCCGGAAGCCGTACACAATCAGGAACGCTGGCAAGACTGCGCC
CCGGTTACAAGGTATTTCCATCCGTCTTGCGGACAATCCTGGACAAGTGA
AAGCAAGTTCGAAATTTGGGTCTGTTGCAAAGCTTGTGGTGCAGAAAAAC
AGCAGAATTACGGCCACTTGTGACGTTTCTGGAGCAGTTCGACACGTTAT
ATTTTATCGAAACGGGCTACCCATTAGAAAGGACGAAGTTGGCCCTTTTG
GCATCGCCGGTGTGTATTGGATTAAAAGAAGAGGCAAGTTTATATTGAGG
TTTCATCCATGGAAAGTTGCCTTGGTGAGCGATTTTTATTCGCTATCTTG
TGTGGTTTACGGTAAGGACGGCAGCGTGCAATACGCAAAATTGGACGTGC
AGCAAACTTTAAAGTAG

protein sequence of Gvermi7622.t1

>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=389bp
MQKKSTVLFLITVHAAVCAVEAHQAIAYPWPISNDGACRIGKFKNCPGPC
PTGDLRLDQTPDSPSITVRRGQKLDINIKRNNHAGGFTRWAMVHVHHMHD
KKKHEQAAFYYTCGDQRITSCNANNRNRDCTYDRRRKYYRHQIRIPEVYG
NGVYVLGYAWYGGTQENGQNGDFGDYYDCMYVQVKGGPYKKWYQPTFKMG
DSTTGKNGLCRARTNWIGDCWKEPCRHKKKARNLIPWQFSKGKKPGKLSN
VAFRKPYTIRNAGKTAPRLQGISIRLADNPGQVKASSKFGSVAKLVVQKN
SRITATCDVSGAVRHVIFYRNGLPIRKDEVGPFGIAGVYWIKRRGKFILR
FHPWKVALVSDFYSLSCVVYGKDGSVQYAKLDVQQTLK*

mRNA from alignment at ScGOVlb_64:609406..610572+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at ScGOVlb_64:609406..610572+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAAGAAAAGCACTGTGCTGTTCTTGATTACGGTCCATGCTGCAGT
ATGCGCTGTCGAAGCTCATCAGGCAATTGCGTATCCCTGGCCCATATCGA
ATGACGGAGCATGCCGCATTGGAAAGTTTAAGAACTGTCCTGGTCCGTGT
CCAACTGGCGATCTTCGCCTAGATCAAACACCAGACTCGCCATCTATCAC
TGTTCGTCGTGGTCAGAAACTTGACATAAACATCAAACGCAACAATCATG
CAGGTGGCTTTACAAGGTGGGCCATGGTGCACGTCCATCACATGCACGAT
AAAAAGAAACATGAACAAGCAGCTTTTTACTACACATGCGGTGATCAACG
GATCACGAGCTGTAACGCGAATAACCGGAATCGGGACTGTACGTATGACA
GACGAAGAAAATACTACCGACATCAAATTCGCATCCCGGAAGTGTATGGA
AACGGAGTATACGTGCTAGGCTATGCTTGGTACGGGGGAACGCAGGAAAA
TGGGCAAAACGGGGATTTTGGCGACTACTATGATTGCATGTATGTTCAAG
TGAAAGGTGGCCCGTACAAAAAGTGGTATCAACCCACATTTAAAATGGGG
GATTCAACGACCGGAAAGAATGGACTTTGTAGAGCTCGGACCAACTGGAT
AGGGGATTGCTGGAAGGAACCTTGCAGACATAAAAAGAAAGCGCGGAACC
TCATCCCTTGGCAATTTTCCAAAGGAAAAAAGCCGGGCAAACTTTCGAAT
GTCGCGTTCCGGAAGCCGTACACAATCAGGAACGCTGGCAAGACTGCGCC
CCGGTTACAAGGTATTTCCATCCGTCTTGCGGACAATCCTGGACAAGTGA
AAGCAAGTTCGAAATTTGGGTCTGTTGCAAAGCTTGTGGTGCAGAAAAAC
AGCAGAATTACGGCCACTTGTGACGTTTCTGGAGCAGTTCGACACGTTAT
ATTTTATCGAAACGGGCTACCCATTAGAAAGGACGAAGTTGGCCCTTTTG
GCATCGCCGGTGTGTATTGGATTAAAAGAAGAGGCAAGTTTATATTGAGG
TTTCATCCATGGAAAGTTGCCTTGGTGAGCGATTTTTATTCGCTATCTTG
TGTGGTTTACGGTAAGGACGGCAGCGTGCAATACGCAAAATTGGACGTGC
AGCAAACTTTAAAGTAG

Coding sequence (CDS) from alignment at ScGOVlb_64:609406..610572+

>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1167bp|location=Sequence derived from alignment at ScGOVlb_64:609406..610572+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAAGAAAAGCACTGTGCTGTTCTTGATTACGGTCCATGCTGCAGT
ATGCGCTGTCGAAGCTCATCAGGCAATTGCGTATCCCTGGCCCATATCGA
ATGACGGAGCATGCCGCATTGGAAAGTTTAAGAACTGTCCTGGTCCGTGT
CCAACTGGCGATCTTCGCCTAGATCAAACACCAGACTCGCCATCTATCAC
TGTTCGTCGTGGTCAGAAACTTGACATAAACATCAAACGCAACAATCATG
CAGGTGGCTTTACAAGGTGGGCCATGGTGCACGTCCATCACATGCACGAT
AAAAAGAAACATGAACAAGCAGCTTTTTACTACACATGCGGTGATCAACG
GATCACGAGCTGTAACGCGAATAACCGGAATCGGGACTGTACGTATGACA
GACGAAGAAAATACTACCGACATCAAATTCGCATCCCGGAAGTGTATGGA
AACGGAGTATACGTGCTAGGCTATGCTTGGTACGGGGGAACGCAGGAAAA
TGGGCAAAACGGGGATTTTGGCGACTACTATGATTGCATGTATGTTCAAG
TGAAAGGTGGCCCGTACAAAAAGTGGTATCAACCCACATTTAAAATGGGG
GATTCAACGACCGGAAAGAATGGACTTTGTAGAGCTCGGACCAACTGGAT
AGGGGATTGCTGGAAGGAACCTTGCAGACATAAAAAGAAAGCGCGGAACC
TCATCCCTTGGCAATTTTCCAAAGGAAAAAAGCCGGGCAAACTTTCGAAT
GTCGCGTTCCGGAAGCCGTACACAATCAGGAACGCTGGCAAGACTGCGCC
CCGGTTACAAGGTATTTCCATCCGTCTTGCGGACAATCCTGGACAAGTGA
AAGCAAGTTCGAAATTTGGGTCTGTTGCAAAGCTTGTGGTGCAGAAAAAC
AGCAGAATTACGGCCACTTGTGACGTTTCTGGAGCAGTTCGACACGTTAT
ATTTTATCGAAACGGGCTACCCATTAGAAAGGACGAAGTTGGCCCTTTTG
GCATCGCCGGTGTGTATTGGATTAAAAGAAGAGGCAAGTTTATATTGAGG
TTTCATCCATGGAAAGTTGCCTTGGTGAGCGATTTTTATTCGCTATCTTG
TGTGGTTTACGGTAAGGACGGCAGCGTGCAATACGCAAAATTGGACGTGC
AGCAAACTTTAAAGTAG