Gvermi7683.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7683.t1
Unique NameGvermi7683.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2267022..2268502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7683Gvermi7683Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2267022..2268502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7683.t1Gvermi7683.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2267022..2268502 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7683.t1.start1Gvermi7683.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2267022..2267024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7683.t1.CDS1Gvermi7683.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2267022..2267466 +
Gvermi7683.t1.CDS2Gvermi7683.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2267553..2268502 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7683.t1.exon1Gvermi7683.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2267022..2267466 +
Gvermi7683.t1.exon2Gvermi7683.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2267553..2268502 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7683.t1.intron1Gvermi7683.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 2267467..2267552 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7683.t1.stop1Gvermi7683.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2268500..2268502 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7683.t1 ID=Gvermi7683.t1|Name=Gvermi7683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=465bp
MSSNSHSVPQSLPPFGGKESLYQPALAVLLLFLAGSTFSLGVFIPQVEAS
SKTAHNLDGVWETAMGAMHFLSAPIMIFSSMYLDAGQVPVHPMENIAYHS
TKTFRLRLLHMVSAIAFGLLAFSALGAQYSNRFMLFIGVSFQAFPLGILY
LTCTQALLAWVPSHAGIAIAVGHFAFGLGTIGLTQVFSFLITMFGSVAAI
YFASIILAVLAFLPALLLRWPPVDSTTQEEQDPLLQRFDAIESISWRRLV
RIPNFWLYIGAVFTTSSSYMLNPYYFKLGHLFNKPLGELVLFFNLSNLVA
TVCSLFSTALTDVVGFGKGFFFSGSKNIMGLLMVMQTICFFASIFINNSL
NFLGFVTVKALLKIIVTCHVGCSALLARDLFGSKNSCIVFGFGAGLALGF
GEATSAWIMAAVEAASAPILTPSNYNAFYWIATAWSMFGVMCIICVQRHE
SKGMFEPIYSRPPM*
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spliced messenger RNA

>Gvermi7683.t1 ID=Gvermi7683.t1|Name=Gvermi7683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at ScGOVlb_64:2267022..2268502+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCAACTCTCACTCTGTGCCTCAGTCGCTGCCGCCCTTCGGAGG
CAAAGAATCTCTTTATCAACCAGCCCTCGCTGTGCTTCTCTTGTTTCTCG
CAGGATCTACTTTTTCCCTGGGTGTCTTCATTCCACAGGTTGAAGCTTCG
TCTAAGACAGCCCACAACTTAGATGGAGTTTGGGAAACGGCTATGGGTGC
CATGCACTTTCTTTCAGCTCCGATCATGATCTTTTCCAGTATGTATCTAG
ATGCTGGGCAGGTTCCTGTTCATCCGATGGAAAATATTGCCTACCACTCC
ACCAAGACTTTCCGCCTTCGCCTACTTCACATGGTGTCTGCCATTGCATT
TGGCTTGTTGGCGTTTTCAGCTCTTGGAGCTCAATATTCTAATCGCTTCA
TGTTGTTCATCGGGGTATCTTTTCAAGCCTTTCCCCTTGGGATTTTATAT
TTGACTTGCACACAGGCGCTCCTCGCATGGGTGCCCAGCCATGCTGGAAT
AGCTATTGCCGTTGGGCACTTTGCATTTGGGCTTGGCACTATCGGGCTTA
CACAGGTATTCAGCTTTCTTATTACGATGTTCGGCTCAGTGGCCGCTATT
TATTTCGCCTCCATCATACTTGCGGTTTTAGCGTTCCTGCCGGCTCTTCT
GCTCAGATGGCCCCCTGTGGACAGCACAACTCAAGAAGAACAAGACCCGC
TTCTGCAGCGCTTTGACGCAATCGAAAGCATTTCATGGCGCAGGCTTGTG
CGCATACCAAACTTTTGGCTCTACATTGGAGCCGTTTTTACAACCAGTTC
TTCATATATGCTCAACCCATACTACTtcaaacttgggcatttgttcaaca
agcctctcggcgaactagtgttgtttttcaatctatcaaatcttgtggcc
acggtttgcagtctcttcAGCACCGCGCTGACAGATGTTGTTGGATTCGG
GAAGGGATTTTTCTTTTCAGGTTCGAAGAATATCATGGGGTTGCTCATGG
TCATGCAAACGATATGCTTCTTTGCTTCCATTTTTATCAACAACAGCCTC
AACTTTCTTGGATTTGTGACTGTCAAAGCTCTGCTGAAAATTATTGTCAC
TTGTCATGTAGGATGCTCGGCGCTTTTGGCCAGGGACTTGTTCGGTTCTA
AAAACAGTTGCATCGTTTTTGGATTTGGGGCTGGGCTGGCGCTTGGCTTT
GGCGAGGCGACCTCGGcgtggataatggctgctgtcgaagctgcatctgc
accgattttgacgccgtcgaactacaatgctttctactggattgcGACTG
CGTGGAGCATGTTCGGGGTGATGTGTATTATCTGTGTGCAACGACACGAA
AGCAAGGGAATGTTCGAGCCTATATATAGTAGACCTCCAATGTAA
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protein sequence of Gvermi7683.t1

>Gvermi7683.t1 ID=Gvermi7683.t1|Name=Gvermi7683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=465bp
MSSNSHSVPQSLPPFGGKESLYQPALAVLLLFLAGSTFSLGVFIPQVEAS
SKTAHNLDGVWETAMGAMHFLSAPIMIFSSMYLDAGQVPVHPMENIAYHS
TKTFRLRLLHMVSAIAFGLLAFSALGAQYSNRFMLFIGVSFQAFPLGILY
LTCTQALLAWVPSHAGIAIAVGHFAFGLGTIGLTQVFSFLITMFGSVAAI
YFASIILAVLAFLPALLLRWPPVDSTTQEEQDPLLQRFDAIESISWRRLV
RIPNFWLYIGAVFTTSSSYMLNPYYFKLGHLFNKPLGELVLFFNLSNLVA
TVCSLFSTALTDVVGFGKGFFFSGSKNIMGLLMVMQTICFFASIFINNSL
NFLGFVTVKALLKIIVTCHVGCSALLARDLFGSKNSCIVFGFGAGLALGF
GEATSAWIMAAVEAASAPILTPSNYNAFYWIATAWSMFGVMCIICVQRHE
SKGMFEPIYSRPPM*
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mRNA from alignment at ScGOVlb_64:2267022..2268502+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7683.t1 ID=Gvermi7683.t1|Name=Gvermi7683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1481bp|location=Sequence derived from alignment at ScGOVlb_64:2267022..2268502+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCCAACTCTCACTCTGTGCCTCAGTCGCTGCCGCCCTTCGGAGG
CAAAGAATCTCTTTATCAACCAGCCCTCGCTGTGCTTCTCTTGTTTCTCG
CAGGATCTACTTTTTCCCTGGGTGTCTTCATTCCACAGGTTGAAGCTTCG
TCTAAGACAGCCCACAACTTAGATGGAGTTTGGGAAACGGCTATGGGTGC
CATGCACTTTCTTTCAGCTCCGATCATGATCTTTTCCAGTATGTATCTAG
ATGCTGGGCAGGTTCCTGTTCATCCGATGGAAAATATTGCCTACCACTCC
ACCAAGACTTTCCGCCTTCGCCTACTTCACATGGTGTCTGCCATTGCATT
TGGCTTGTTGGCGTTTTCAGCTCTTGGAGCTCAATATTCTAATCGCTTCA
TGTTGTTCATCGGGGTATCTTTTCAAGCCTTTCCCCTTGGGATTTGTGAG
TTTAACGTCTTCAATCGAACTCTACATGCTAAGCATAATCTGACTTTTTT
CTACGATGTCTGTTTTCCATATCCCAACCAGTATATTTGACTTGCACACA
GGCGCTCCTCGCATGGGTGCCCAGCCATGCTGGAATAGCTATTGCCGTTG
GGCACTTTGCATTTGGGCTTGGCACTATCGGGCTTACACAGGTATTCAGC
TTTCTTATTACGATGTTCGGCTCAGTGGCCGCTATTTATTTCGCCTCCAT
CATACTTGCGGTTTTAGCGTTCCTGCCGGCTCTTCTGCTCAGATGGCCCC
CTGTGGACAGCACAACTCAAGAAGAACAAGACCCGCTTCTGCAGCGCTTT
GACGCAATCGAAAGCATTTCATGGCGCAGGCTTGTGCGCATACCAAACTT
TTGGCTCTACATTGGAGCCGTTTTTACAACCAGTTCTTCATATATGCTCA
ACCCATACTACTtcaaacttgggcatttgttcaacaagcctctcggcgaa
ctagtgttgtttttcaatctatcaaatcttgtggccacggtttgcagtct
cttcAGCACCGCGCTGACAGATGTTGTTGGATTCGGGAAGGGATTTTTCT
TTTCAGGTTCGAAGAATATCATGGGGTTGCTCATGGTCATGCAAACGATA
TGCTTCTTTGCTTCCATTTTTATCAACAACAGCCTCAACTTTCTTGGATT
TGTGACTGTCAAAGCTCTGCTGAAAATTATTGTCACTTGTCATGTAGGAT
GCTCGGCGCTTTTGGCCAGGGACTTGTTCGGTTCTAAAAACAGTTGCATC
GTTTTTGGATTTGGGGCTGGGCTGGCGCTTGGCTTTGGCGAGGCGACCTC
GGcgtggataatggctgctgtcgaagctgcatctgcaccgattttgacgc
cgtcgaactacaatgctttctactggattgcGACTGCGTGGAGCATGTTC
GGGGTGATGTGTATTATCTGTGTGCAACGACACGAAAGCAAGGGAATGTT
CGAGCCTATATATAGTAGACCTCCAATGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:2267022..2268502+

>Gvermi7683.t1 ID=Gvermi7683.t1|Name=Gvermi7683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1395bp|location=Sequence derived from alignment at ScGOVlb_64:2267022..2268502+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCCAACTCTCACTCTGTGCCTCAGTCGCTGCCGCCCTTCGGAGG
CAAAGAATCTCTTTATCAACCAGCCCTCGCTGTGCTTCTCTTGTTTCTCG
CAGGATCTACTTTTTCCCTGGGTGTCTTCATTCCACAGGTTGAAGCTTCG
TCTAAGACAGCCCACAACTTAGATGGAGTTTGGGAAACGGCTATGGGTGC
CATGCACTTTCTTTCAGCTCCGATCATGATCTTTTCCAGTATGTATCTAG
ATGCTGGGCAGGTTCCTGTTCATCCGATGGAAAATATTGCCTACCACTCC
ACCAAGACTTTCCGCCTTCGCCTACTTCACATGGTGTCTGCCATTGCATT
TGGCTTGTTGGCGTTTTCAGCTCTTGGAGCTCAATATTCTAATCGCTTCA
TGTTGTTCATCGGGGTATCTTTTCAAGCCTTTCCCCTTGGGATTTTATAT
TTGACTTGCACACAGGCGCTCCTCGCATGGGTGCCCAGCCATGCTGGAAT
AGCTATTGCCGTTGGGCACTTTGCATTTGGGCTTGGCACTATCGGGCTTA
CACAGGTATTCAGCTTTCTTATTACGATGTTCGGCTCAGTGGCCGCTATT
TATTTCGCCTCCATCATACTTGCGGTTTTAGCGTTCCTGCCGGCTCTTCT
GCTCAGATGGCCCCCTGTGGACAGCACAACTCAAGAAGAACAAGACCCGC
TTCTGCAGCGCTTTGACGCAATCGAAAGCATTTCATGGCGCAGGCTTGTG
CGCATACCAAACTTTTGGCTCTACATTGGAGCCGTTTTTACAACCAGTTC
TTCATATATGCTCAACCCATACTACTtcaaacttgggcatttgttcaaca
agcctctcggcgaactagtgttgtttttcaatctatcaaatcttgtggcc
acggtttgcagtctcttcAGCACCGCGCTGACAGATGTTGTTGGATTCGG
GAAGGGATTTTTCTTTTCAGGTTCGAAGAATATCATGGGGTTGCTCATGG
TCATGCAAACGATATGCTTCTTTGCTTCCATTTTTATCAACAACAGCCTC
AACTTTCTTGGATTTGTGACTGTCAAAGCTCTGCTGAAAATTATTGTCAC
TTGTCATGTAGGATGCTCGGCGCTTTTGGCCAGGGACTTGTTCGGTTCTA
AAAACAGTTGCATCGTTTTTGGATTTGGGGCTGGGCTGGCGCTTGGCTTT
GGCGAGGCGACCTCGGcgtggataatggctgctgtcgaagctgcatctgc
accgattttgacgccgtcgaactacaatgctttctactggattgcGACTG
CGTGGAGCATGTTCGGGGTGATGTGTATTATCTGTGTGCAACGACACGAA
AGCAAGGGAATGTTCGAGCCTATATATAGTAGACCTCCAATGTAA
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