Gvermi7709.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7709.t1
Unique NameGvermi7709.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length230
Homology
BLAST of Gvermi7709.t1 vs. uniprot
Match: A0A2V3ISI4_9FLOR (VWFA domain-containing protein n=3 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI4_9FLOR)

HSP 1 Score: 236 bits (603), Expect = 1.910e-75
Identity = 121/231 (52.38%), Postives = 163/231 (70.56%), Query Frame = 0
Query:    1 MLALISAFALFFSLGSCMSHEDAKLMYKNTVRTAAAEVERRGCSVNVCFAVDTSGSVSSYEFGLEKDFLIDITSIVGADSRSKFAAGQYGSQTYLISALTDDVEAFNLRVRNARFQNDPATSVGSGIVFCDRQLRREMRLNPFSDHANKLVLLGDGRNNLGGDPIRRANNFRDRANGVVSTVGVGF---KDTNALAQIAGSSDRVFAIDDYVELSFVIDDLVYDICGIVLD 228
            ML      AL F+  SC S E+AKL Y+NT+RTA+  VE RGC  +VCFA+DTSGSV+  +F   +DF++DIT+I+G D R+KFAAGQYG +TY I+++T DV  FN  V  + +++D  TSVGSGIVFC  QLRR  +    ++  NK+V++GDGRN LGGDPIRRANNFR +  G +STV +G+   +    L+++AG +  VF +DDY ELS  ++DLV +ICGI LD
Sbjct:    1 MLKFFFVLALLFAYASCRSVEEAKLRYQNTIRTASEAVEARGCLAHVCFALDTSGSVTKQQFFYGRDFILDITAILGNDRRTKFAAGQYGRRTYKIASMTGDVATFNTEVGFSPYRHDSQTSVGSGIVFCHSQLRRARKKAADANIVNKMVVIGDGRNTLGGDPIRRANNFRRKVGGEISTVSIGYPGKEGERILSEVAGENGGVFTVDDYDELSEKVEDLVAEICGISLD 231          
BLAST of Gvermi7709.t1 vs. uniprot
Match: A0A2V3IBU0_9FLOR (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBU0_9FLOR)

HSP 1 Score: 221 bits (562), Expect = 1.600e-68
Identity = 112/215 (52.09%), Postives = 153/215 (71.16%), Query Frame = 0
Query:   17 CMSHEDAKLMYKNTVRTAAAEVERRGCSVNVCFAVDTSGSVSSYEFGLEKDFLIDITSIVGADSRSKFAAGQYGSQTYLISALTDDVEAFNLRVRNARFQNDPATSVGSGIVFCDRQLRREMRLNPFSDHANKLVLLGDGRNNLGGDPIRRANNFRDRANGVVSTVGVGF---KDTNALAQIAGSSDRVFAIDDYVELSFVIDDLVYDICGIVLD 228
            C S E+AKL Y+NT+RTA+  VE RGC  +VCFA+DTSGSV+  +F   +DF++DIT+I+G D R+KFAAGQYG +TY I+++T DV  FN  V  + +++D  TSVGSGIVFC  QLRR  +    ++  NK+V++GDGRN    DPIRRANNFR +  G +STV +G+   +    L+++AG +  VF +DDY ELS  ++DLV +ICGI LD
Sbjct:   71 CRSVEEAKLRYQNTIRTASEAVEARGCLAHVCFALDTSGSVTKQQFSKGRDFILDITAILGNDRRTKFAAGQYGRRTYKIASMTGDVATFNTEVGFSPYRHDSQTSVGSGIVFCHSQLRRARKNAADANIVNKMVVIGDGRNTF--DPIRRANNFRRKVGGEISTVSIGYPGKEGERILSEVAGETGGVFTVDDYDELSEKVEDLVVEICGISLD 283          
BLAST of Gvermi7709.t1 vs. uniprot
Match: A0A2V3ID60_9FLOR (Cartilage matrix protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ID60_9FLOR)

HSP 1 Score: 125 bits (315), Expect = 3.640e-32
Identity = 71/190 (37.37%), Postives = 112/190 (58.95%), Query Frame = 0
Query:   38 VERRGCSVNVCFAVDTSGSVSSYEFGLEKDFLIDITSIVGAD-SRSKFAAGQYGSQTYLISALTDDVEAFNLRVRNARFQNDPATSVGSGIVFCDRQLRREMRLNPFSDHANKLVLLGDGRNNLGGDPIRRANNFRD-RANGVVSTVGVGFKDTNALAQIA-GSSDRVFAIDDYVELSFVIDDLVYDICG 224
            VER GC++NVCFA+D S SV+  ++ ++KDF+  +++++  +   S F+A QYG Q   IS LT  ++ FNL+V  +       +S+G GI +C  QL         +D+  K+++ GDGR     D +  A +F+D   NG +STVGVGF +T  L  IA     R+F ID+Y++   ++ DL  ++CG
Sbjct:   39 VERNGCNLNVCFALDGSASVTPLDYEMQKDFVQLMSAVLDFEVENSSFSAVQYGDQVSPISPLTQSIDDFNLKVHASNISAFQGSSIGKGITYCSNQLLE------LADNPVKIIVFGDGRETSKTDAVSIAASFKDFHPNGRLSTVGVGFPNTVLLKTIAEAGGGRLFEIDEYIDALDLVVDLFLEVCG 222          
The following BLAST results are available for this feature:
BLAST of Gvermi7709.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ISI4_9FLOR1.910e-7552.38VWFA domain-containing protein n=3 Tax=Gracilariop... [more]
A0A2V3IBU0_9FLOR1.600e-6852.09VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3ID60_9FLOR3.640e-3237.37Cartilage matrix protein n=1 Tax=Gracilariopsis ch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 44..223
e-value: 4.1E-15
score: 66.2
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 46..213
e-value: 4.0E-18
score: 66.3
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 46..218
score: 15.923446
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 40..226
e-value: 6.3E-24
score: 86.9
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 31..225
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 45..205
e-value: 5.64668E-14
score: 65.3906

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2951203..2951892 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7709.t1Gvermi7709.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_64 2951203..2951892 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7709.t1 ID=Gvermi7709.t1|Name=Gvermi7709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=230bp
MLALISAFALFFSLGSCMSHEDAKLMYKNTVRTAAAEVERRGCSVNVCFA
VDTSGSVSSYEFGLEKDFLIDITSIVGADSRSKFAAGQYGSQTYLISALT
DDVEAFNLRVRNARFQNDPATSVGSGIVFCDRQLRREMRLNPFSDHANKL
VLLGDGRNNLGGDPIRRANNFRDRANGVVSTVGVGFKDTNALAQIAGSSD
RVFAIDDYVELSFVIDDLVYDICGIVLDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf