Gvermi7727.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7727.t1
Unique NameGvermi7727.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length61
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6370contigScGOVlb_6370:2..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7727Gvermi7727Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_6370 2..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7727.t1Gvermi7727.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_6370 2..307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7727.t1.CDS1Gvermi7727.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6370 2..139 +
Gvermi7727.t1.CDS2Gvermi7727.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6370 263..307 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7727.t1.exon1Gvermi7727.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6370 2..139 +
Gvermi7727.t1.exon2Gvermi7727.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6370 263..307 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7727.t1.intron1Gvermi7727.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_6370 140..262 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7727.t1.stop1Gvermi7727.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_6370 305..307 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7727.t1 ID=Gvermi7727.t1|Name=Gvermi7727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=61bp
QCLQLLHETCLDKLAAICKERSIPRLYCPVCFRYYVSNPNSLTLAHHRNC
GAKEVVLRDL*
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spliced messenger RNA

>Gvermi7727.t1 ID=Gvermi7727.t1|Name=Gvermi7727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=183bp|location=Sequence derived from alignment at ScGOVlb_6370:2..307+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CAGTGTCTTCAATTACTTCATGAGACTTGTCTCGATAAGCTCGCTGCTAT
ATGCAAAGAAAGGAGCATACCAAGACTGTACTGTCCGGTTTGCTTTCGGT
ACTATGTTTCAAACCCTAATTCGCTCACCCTCGCGCATCACAGGAACTGT
GGCGCCAAGGAGGTGGTGTTGCGGGATTTGTGA
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protein sequence of Gvermi7727.t1

>Gvermi7727.t1 ID=Gvermi7727.t1|Name=Gvermi7727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=61bp
QCLQLLHETCLDKLAAICKERSIPRLYCPVCFRYYVSNPNSLTLAHHRNC
GAKEVVLRDL*
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mRNA from alignment at ScGOVlb_6370:2..307+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7727.t1 ID=Gvermi7727.t1|Name=Gvermi7727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=306bp|location=Sequence derived from alignment at ScGOVlb_6370:2..307+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CAGTGTCTTCAATTACTTCATGAGACTTGTCTCGATAAGCTCGCTGCTAT
ATGCAAAGAAAGGAGCATACCAAGACTGTACTGTCCGGTTTGCTTTCGGT
ACTATGTTTCAAACCCTAATTCGCTCACCCTCGCGCATGTACGTCCGCAC
TACAGGATTTGAAGGACGCATTAGCAGTCGCTGACGTTTCCACCTTGTTT
GACGGCCATATTACTCTTTCGGACCGATCGTGGCGCACGAATCGCAACAT
CTATGACGTAGCACAGGAACTGTGGCGCCAAGGAGGTGGTGTTGCGGGAT
TTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_6370:2..307+

>Gvermi7727.t1 ID=Gvermi7727.t1|Name=Gvermi7727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=183bp|location=Sequence derived from alignment at ScGOVlb_6370:2..307+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CAGTGTCTTCAATTACTTCATGAGACTTGTCTCGATAAGCTCGCTGCTAT
ATGCAAAGAAAGGAGCATACCAAGACTGTACTGTCCGGTTTGCTTTCGGT
ACTATGTTTCAAACCCTAATTCGCTCACCCTCGCGCATCACAGGAACTGT
GGCGCCAAGGAGGTGGTGTTGCGGGATTTGTGA
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