Gvermi7203.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7203.t1
Unique Name	Gvermi7203.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	303

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_5487	contig	ScGOVlb_5487:136..1043 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1589297.A0A0B5H2K0_9CAUD
Max annot lvl	10744\|Podoviridae
Evalue	1.59e-09
EggNOG OGs	4QFIS@10239\|Viruses,4QSG1@28883\|Caudovirales,4QP3U@10744\|Podoviridae

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7203	Gvermi7203	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_5487 136..1043 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7203.t1.start1	Gvermi7203.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_5487 136..138 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7203.t1.CDS1	Gvermi7203.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_5487 136..1043 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7203.t1.exon1	Gvermi7203.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_5487 136..1043 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7203.t1	Gvermi7203.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_5487 136..1043 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_5487:136..1043+
coding sequence from alignment at ScGOVlb_5487:136..1043+

mRNA sequence

>Gvermi7203.t1 ID=Gvermi7203.t1|Name=Gvermi7203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=303bp
MYFAMLVLVANIAFSFYRMDKINETIQKAALVNGGRLDIRKFSALVFGDT
AKQKKHKKRTDKEATRRKTKRERARRRRTAARKEAARYKVVTRSELKKVI
EGDGIVYALSPRIRDHLEAMNTRKCSRCGKVKDLVRFECTRTKTGYSTKC
IPCRRLRDYYSDPVHYFAKHLTSASRDRASAKGLPFDIDDDFVMQLYRDQ
DGRCALCGRRVTLFNHTEPGGAVRGWQIHLRNMSLDQIVPGHGYTTSNVQ
IVDRGCNFSKRNMQDEEFINMCRYVVLRHGPEAPPDIYDLGGPIVSDRSA
EEV

spliced messenger RNA

>Gvermi7203.t1 ID=Gvermi7203.t1|Name=Gvermi7203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=908bp|location=Sequence derived from alignment at ScGOVlb_5487:136..1043+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTTTGCAATGCTCGTGCTCGTCGCTAATATCGCATTCTCTTTCTA
TAGGATGGACAAGATAAACGAGACCATTCAGAAGGCAGCGCTGGTCAATG
GGGGGCGACTCGACATCCGCAAGTTCAGCGCCCTGGTGTTTGGTGACACT
GCGAAACAAAAGAAACACAAGAAACGCACAGACAAAGAGGCCACGAGAAG
AAAGACCAAGCGCGAGAGGGCCCGCAGGCGGAGAACAGCAGCACGCAAAG
AAGCGGCCCGGTACAAAGTGGTGACGCGAAGTGAATTGAAAAAAGTTATC
GAGGGTGATGGTATAGTGTACGCCCTGTCGCCCCGCATTCGCGACCACCT
CGAGGCCATGAACACACGCAAGTGCTCCCGCTGCGGCAAAGTCAAGGACC
TGGTGCGGTTCGAGTGCACCCGGACCAAAACGGGCTACAGCACAAAATGC
ATCCCTTGCCGCCGTCTCCGGGACTACTACAGCGACCCAGTGCACTACTT
CGCCAAGCACCTGACGAGTGCGAGTCGGGACCGGGCCTCCGCCAAGGGAT
TGCCCTTCGACATCGACGACGATTTTGTGATGCAGTTGTACCGGGACCAG
GACGGCCGATGTGCGCTCTGTGGGCGGCGAGTGACGCTGTTCAACCACAC
GGAGCCCGGTGGTGCGGTTCGGGGGTGGCAGATCCACCTGCGCAACATGT
CGCTAGACCAGATCGTGCCCGGCCACGGCTACACTACGTCCAACGTCCAG
ATCGTGGACAGGGGCTGCAACTTCTCCAAGCGCAACATGCAGGACGAGGA
GTTCATCAACATGTGCCGCTATGTGGTCCTCCGCCACGGTCCGGAAGCGC
CGCCCGACATCTACGACTTGGGGGGGCCCATCGTGAGCGACAGGAGCGCG
GAGGAGGT

protein sequence of Gvermi7203.t1

>Gvermi7203.t1 ID=Gvermi7203.t1|Name=Gvermi7203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=303bp
MYFAMLVLVANIAFSFYRMDKINETIQKAALVNGGRLDIRKFSALVFGDT
AKQKKHKKRTDKEATRRKTKRERARRRRTAARKEAARYKVVTRSELKKVI
EGDGIVYALSPRIRDHLEAMNTRKCSRCGKVKDLVRFECTRTKTGYSTKC
IPCRRLRDYYSDPVHYFAKHLTSASRDRASAKGLPFDIDDDFVMQLYRDQ
DGRCALCGRRVTLFNHTEPGGAVRGWQIHLRNMSLDQIVPGHGYTTSNVQ
IVDRGCNFSKRNMQDEEFINMCRYVVLRHGPEAPPDIYDLGGPIVSDRSA
EEV

mRNA from alignment at ScGOVlb_5487:136..1043+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7203.t1 ID=Gvermi7203.t1|Name=Gvermi7203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=908bp|location=Sequence derived from alignment at ScGOVlb_5487:136..1043+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTTTGCAATGCTCGTGCTCGTCGCTAATATCGCATTCTCTTTCTA
TAGGATGGACAAGATAAACGAGACCATTCAGAAGGCAGCGCTGGTCAATG
GGGGGCGACTCGACATCCGCAAGTTCAGCGCCCTGGTGTTTGGTGACACT
GCGAAACAAAAGAAACACAAGAAACGCACAGACAAAGAGGCCACGAGAAG
AAAGACCAAGCGCGAGAGGGCCCGCAGGCGGAGAACAGCAGCACGCAAAG
AAGCGGCCCGGTACAAAGTGGTGACGCGAAGTGAATTGAAAAAAGTTATC
GAGGGTGATGGTATAGTGTACGCCCTGTCGCCCCGCATTCGCGACCACCT
CGAGGCCATGAACACACGCAAGTGCTCCCGCTGCGGCAAAGTCAAGGACC
TGGTGCGGTTCGAGTGCACCCGGACCAAAACGGGCTACAGCACAAAATGC
ATCCCTTGCCGCCGTCTCCGGGACTACTACAGCGACCCAGTGCACTACTT
CGCCAAGCACCTGACGAGTGCGAGTCGGGACCGGGCCTCCGCCAAGGGAT
TGCCCTTCGACATCGACGACGATTTTGTGATGCAGTTGTACCGGGACCAG
GACGGCCGATGTGCGCTCTGTGGGCGGCGAGTGACGCTGTTCAACCACAC
GGAGCCCGGTGGTGCGGTTCGGGGGTGGCAGATCCACCTGCGCAACATGT
CGCTAGACCAGATCGTGCCCGGCCACGGCTACACTACGTCCAACGTCCAG
ATCGTGGACAGGGGCTGCAACTTCTCCAAGCGCAACATGCAGGACGAGGA
GTTCATCAACATGTGCCGCTATGTGGTCCTCCGCCACGGTCCGGAAGCGC
CGCCCGACATCTACGACTTGGGGGGGCCCATCGTGAGCGACAGGAGCGCG
GAGGAGGT

Coding sequence (CDS) from alignment at ScGOVlb_5487:136..1043+

>Gvermi7203.t1 ID=Gvermi7203.t1|Name=Gvermi7203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=908bp|location=Sequence derived from alignment at ScGOVlb_5487:136..1043+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTTTGCAATGCTCGTGCTCGTCGCTAATATCGCATTCTCTTTCTA
TAGGATGGACAAGATAAACGAGACCATTCAGAAGGCAGCGCTGGTCAATG
GGGGGCGACTCGACATCCGCAAGTTCAGCGCCCTGGTGTTTGGTGACACT
GCGAAACAAAAGAAACACAAGAAACGCACAGACAAAGAGGCCACGAGAAG
AAAGACCAAGCGCGAGAGGGCCCGCAGGCGGAGAACAGCAGCACGCAAAG
AAGCGGCCCGGTACAAAGTGGTGACGCGAAGTGAATTGAAAAAAGTTATC
GAGGGTGATGGTATAGTGTACGCCCTGTCGCCCCGCATTCGCGACCACCT
CGAGGCCATGAACACACGCAAGTGCTCCCGCTGCGGCAAAGTCAAGGACC
TGGTGCGGTTCGAGTGCACCCGGACCAAAACGGGCTACAGCACAAAATGC
ATCCCTTGCCGCCGTCTCCGGGACTACTACAGCGACCCAGTGCACTACTT
CGCCAAGCACCTGACGAGTGCGAGTCGGGACCGGGCCTCCGCCAAGGGAT
TGCCCTTCGACATCGACGACGATTTTGTGATGCAGTTGTACCGGGACCAG
GACGGCCGATGTGCGCTCTGTGGGCGGCGAGTGACGCTGTTCAACCACAC
GGAGCCCGGTGGTGCGGTTCGGGGGTGGCAGATCCACCTGCGCAACATGT
CGCTAGACCAGATCGTGCCCGGCCACGGCTACACTACGTCCAACGTCCAG
ATCGTGGACAGGGGCTGCAACTTCTCCAAGCGCAACATGCAGGACGAGGA
GTTCATCAACATGTGCCGCTATGTGGTCCTCCGCCACGGTCCGGAAGCGC
CGCCCGACATCTACGACTTGGGGGGGCCCATCGTGAGCGACAGGAGCGCG
GAGGAGGT