Gvermi670.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi670.t1
Unique Name	Gvermi670.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	347

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_4599	contig	ScGOVlb_4599:96..1134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5888.CAK68048
PFAMs	Tubulin,Tubulin_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07375
KEGG Pathway	ko04145,ko04540,ko05130,map04145,map04540,map05130
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464
Evalue	1.19e-243
EggNOG OGs	COG5023@1\|root,KOG1375@2759\|Eukaryota,3ZB3D@5878\|Ciliophora
Description	Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain
COG category	Z
BRITE	ko00000,ko00001,ko03036,ko04147,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi670	Gvermi670	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_4599 96..1134 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi670.t1.start1	Gvermi670.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_4599 96..98 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi670.t1.CDS1	Gvermi670.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_4599 96..1134 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi670.t1.exon1	Gvermi670.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_4599 96..1134 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi670.t1	Gvermi670.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_4599 96..1134 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_4599:96..1134+
coding sequence from alignment at ScGOVlb_4599:96..1134+

mRNA sequence

>Gvermi670.t1 ID=Gvermi670.t1|Name=Gvermi670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=347bp
MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVY
FNEATGGRYVPRAVLVDLEPGTMDSVRAGPYGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELIDSVLDVVRKESESCDCLQGFQITHSLGGGTGSGMGTL
LISKIREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVM
VIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDL
RKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
CASDPRHGRYLTAAALFRGRMSTKEVDEQMLNVQNKNSSLETSKSLX

spliced messenger RNA

>Gvermi670.t1 ID=Gvermi670.t1|Name=Gvermi670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1039bp|location=Sequence derived from alignment at ScGOVlb_4599:96..1134+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGAAATCGTTCACATCCAGGGAGGCCAGTGCGGTAACCAGATTGG
TGCCAAGTTCTGGGAGGTCATCTCCGACGAGCACGGCGTTGACCCGACCG
GCACGTACCATGGTGACTCCGACCTCCAGCTGGAGCGCATCAACGTGTAC
TTCAACGAGGCGACCGGCGGCCGCTACGTGCCGCGCGCCGTGCTCGTCGA
CCTCGAGCCGGGCACGATGGACTCTGTCCGCGCCGGCCCGTACGGCCAGA
TCTTCCGCCCGGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAAC
TGGGCCAAGGGCCACTACACCGAGGGTGCCGAGCTCATCGACTCGGTCCT
CGATGTCGTCCGCAAGGAGTCCGAGTCGTGCGACTGCCTCCAGGGTTTCC
AGATCACGCACTCGCTCGGTGGTGGTACCGGTTCCGGTATGGGCACCCTC
CTGATCTCCAAGATCCGCGAGGAGTACCCGGACCGTATCATGGCCACGTT
CTCCGTGTTCCCGTCGCCGAAGGTGTCCGACACCGTTGTCGAGCCGTACA
ACGCCACGCTTTCGGTGCATCAGCTCGTCGAGAACGCCGATGAGGTCATG
GTCATTGACAACGAGGCCCTGTACGACATCTGCTTCCGCACGCTCAAGCT
CACGACGCCGACGTACGGTGACCTCAACCACCTCGTGTCCGCCGCCATGT
CGGGTGTCACGTGCTGCCTCCGCTTCCCGGGTCAGCTCAACTCCGACCTG
CGCAAGCTTGCCGTGAACTTGATCCCGTTCCCGCGTCTCCACTTCTTCAT
GATTGGTTTCGCGCCGCTCACGTCCCGTGGCTCGCAGCAGTACCGCGCCC
TGACCGTCCCGGAGCTGACGCAGCAGATGTTCGACGCCAAGAACATGATG
TGCGCCTCGGACCCGCGCCATGGCCGCTACCTGACCGCCGCCGCCCTCTT
CCGCGGCCGCATGTCGACAAAGGAGGTTGATGAGCAGATGCTCAACGTCC
AGAACAAGAACTCGTCGTTGGAGACCTCAAAGTCTCTTG

protein sequence of Gvermi670.t1

>Gvermi670.t1 ID=Gvermi670.t1|Name=Gvermi670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=347bp
MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVY
FNEATGGRYVPRAVLVDLEPGTMDSVRAGPYGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELIDSVLDVVRKESESCDCLQGFQITHSLGGGTGSGMGTL
LISKIREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVM
VIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDL
RKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
CASDPRHGRYLTAAALFRGRMSTKEVDEQMLNVQNKNSSLETSKSLX

mRNA from alignment at ScGOVlb_4599:96..1134+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi670.t1 ID=Gvermi670.t1|Name=Gvermi670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1039bp|location=Sequence derived from alignment at ScGOVlb_4599:96..1134+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGAAATCGTTCACATCCAGGGAGGCCAGTGCGGTAACCAGATTGG
TGCCAAGTTCTGGGAGGTCATCTCCGACGAGCACGGCGTTGACCCGACCG
GCACGTACCATGGTGACTCCGACCTCCAGCTGGAGCGCATCAACGTGTAC
TTCAACGAGGCGACCGGCGGCCGCTACGTGCCGCGCGCCGTGCTCGTCGA
CCTCGAGCCGGGCACGATGGACTCTGTCCGCGCCGGCCCGTACGGCCAGA
TCTTCCGCCCGGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAAC
TGGGCCAAGGGCCACTACACCGAGGGTGCCGAGCTCATCGACTCGGTCCT
CGATGTCGTCCGCAAGGAGTCCGAGTCGTGCGACTGCCTCCAGGGTTTCC
AGATCACGCACTCGCTCGGTGGTGGTACCGGTTCCGGTATGGGCACCCTC
CTGATCTCCAAGATCCGCGAGGAGTACCCGGACCGTATCATGGCCACGTT
CTCCGTGTTCCCGTCGCCGAAGGTGTCCGACACCGTTGTCGAGCCGTACA
ACGCCACGCTTTCGGTGCATCAGCTCGTCGAGAACGCCGATGAGGTCATG
GTCATTGACAACGAGGCCCTGTACGACATCTGCTTCCGCACGCTCAAGCT
CACGACGCCGACGTACGGTGACCTCAACCACCTCGTGTCCGCCGCCATGT
CGGGTGTCACGTGCTGCCTCCGCTTCCCGGGTCAGCTCAACTCCGACCTG
CGCAAGCTTGCCGTGAACTTGATCCCGTTCCCGCGTCTCCACTTCTTCAT
GATTGGTTTCGCGCCGCTCACGTCCCGTGGCTCGCAGCAGTACCGCGCCC
TGACCGTCCCGGAGCTGACGCAGCAGATGTTCGACGCCAAGAACATGATG
TGCGCCTCGGACCCGCGCCATGGCCGCTACCTGACCGCCGCCGCCCTCTT
CCGCGGCCGCATGTCGACAAAGGAGGTTGATGAGCAGATGCTCAACGTCC
AGAACAAGAACTCGTCGTTGGAGACCTCAAAGTCTCTTG

Coding sequence (CDS) from alignment at ScGOVlb_4599:96..1134+

>Gvermi670.t1 ID=Gvermi670.t1|Name=Gvermi670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1039bp|location=Sequence derived from alignment at ScGOVlb_4599:96..1134+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGAAATCGTTCACATCCAGGGAGGCCAGTGCGGTAACCAGATTGG
TGCCAAGTTCTGGGAGGTCATCTCCGACGAGCACGGCGTTGACCCGACCG
GCACGTACCATGGTGACTCCGACCTCCAGCTGGAGCGCATCAACGTGTAC
TTCAACGAGGCGACCGGCGGCCGCTACGTGCCGCGCGCCGTGCTCGTCGA
CCTCGAGCCGGGCACGATGGACTCTGTCCGCGCCGGCCCGTACGGCCAGA
TCTTCCGCCCGGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAAC
TGGGCCAAGGGCCACTACACCGAGGGTGCCGAGCTCATCGACTCGGTCCT
CGATGTCGTCCGCAAGGAGTCCGAGTCGTGCGACTGCCTCCAGGGTTTCC
AGATCACGCACTCGCTCGGTGGTGGTACCGGTTCCGGTATGGGCACCCTC
CTGATCTCCAAGATCCGCGAGGAGTACCCGGACCGTATCATGGCCACGTT
CTCCGTGTTCCCGTCGCCGAAGGTGTCCGACACCGTTGTCGAGCCGTACA
ACGCCACGCTTTCGGTGCATCAGCTCGTCGAGAACGCCGATGAGGTCATG
GTCATTGACAACGAGGCCCTGTACGACATCTGCTTCCGCACGCTCAAGCT
CACGACGCCGACGTACGGTGACCTCAACCACCTCGTGTCCGCCGCCATGT
CGGGTGTCACGTGCTGCCTCCGCTTCCCGGGTCAGCTCAACTCCGACCTG
CGCAAGCTTGCCGTGAACTTGATCCCGTTCCCGCGTCTCCACTTCTTCAT
GATTGGTTTCGCGCCGCTCACGTCCCGTGGCTCGCAGCAGTACCGCGCCC
TGACCGTCCCGGAGCTGACGCAGCAGATGTTCGACGCCAAGAACATGATG
TGCGCCTCGGACCCGCGCCATGGCCGCTACCTGACCGCCGCCGCCCTCTT
CCGCGGCCGCATGTCGACAAAGGAGGTTGATGAGCAGATGCTCAACGTCC
AGAACAAGAACTCGTCGTTGGAGACCTCAAAGTCTCTTG