Gvermi12775.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12775.t1
Unique NameGvermi12775.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1484303..1485748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706868.1
Preferred nameACY1
PFAMsM20_dimer,Peptidase_M20,Peptidase_M28
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00300
KEGG koko:K01436,ko:K14677
KEGG ReactionR00669,R10553
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
GOsGO:0003674,GO:0003824,GO:0004046,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009410,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0019538,GO:0030163,GO:0031982,GO:0042221,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043230,GO:0044237,GO:0044238,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051716,GO:0070062,GO:0070887,GO:0071466,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1903561
Evalue8.26e-110
EggNOG OGsCOG0624@1|root,KOG2275@2759|Eukaryota
EC3.5.1.14
Descriptionaminoacylase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12775Gvermi12775Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1484303..1485748 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12775.t1.start1Gvermi12775.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1484303..1484305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12775.t1.CDS1Gvermi12775.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1484303..1485748 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12775.t1.exon1Gvermi12775.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1484303..1485748 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12775.t1.stop1Gvermi12775.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1485746..1485748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12775.t1Gvermi12775.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1484303..1485748 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12775.t1 ID=Gvermi12775.t1|Name=Gvermi12775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=482bp
MAPTPRSVATFFALLAAPILYFGRRNLPSPPLPVVPPLVPAIHRLQQYLR
IRTDHPNPAYLDAQFFLNQTVAALLPDATFSTHTFVQGKPIVLITLQGTN
PQLPSLLLNSHTDVVPSEESQWDWPPYAAHTVLKDAQLRIYARGSQDMKS
VGMQYIEALAQLSLTGWRPKRTVFISFVPDEEVGGADGMGKLVHSTLFQA
MNVGVALDEGLPRNDAKFNCYYGERQTWWLSLNVTDRPGHGSNLPKTTAA
ATLNQIIHKAMQFRKRQLQRLESGVDMGHIVGVNIAYLKYGHPDENMSAG
FTMNVISSLAQAGFDIRVPPTIDATEVDKEIQSWIACDDDEPCPGVSIEW
VIKVQNTRVTSRDPQRNPYAASFMRGLEKAGIAHNLNHGIFQAATDARYL
RAKGVPCFGFSPIDTSPNLLHKHNEYLPVDTYLQGIRIYQSIIREMADDH
QQSSDSDTCDLRQDKQDVTMQMNKSGEKEEL*
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spliced messenger RNA

>Gvermi12775.t1 ID=Gvermi12775.t1|Name=Gvermi12775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at ScGOVlb_425:1484303..1485748+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCCACGCCGCGCTCCGTCGCAACCTTTTTCGCCCTTCTGGCCGC
CCCGATCCTCTACTTTGGTCGCCGCAACCTCCCATCACCGCCGCTTCCCG
TCGTGCCTCCCCTCGTCCCTGCAATCCACCGCCTCCAGCAGTATCTCCGC
ATTCGCACCGATCACCCCAACCCGGCCTATCTCGACGCCCAGTTCTTTCT
CAACCAAACCGTCGCCGCCTTGCTGCCGGACGCCACCTTTTCCACCCATA
CCTTTGTGCAGGGAAAGCCCATTGTGCTCATCACACTTCAGGGCACCAAT
CCCCAGCTCCCGTCGCTTCTGCTCAATTCTCACACCGACGTCGTCCCGTC
AGAGGAGTCACAATGGGACTGGCCCCCGTACGCTGCCCACACCGTGCTCA
AAGACGCCCAGCTTCGAATCTATGCGCGCGGGTCGCAGGACATGAAGAGC
GTTGGCATGCAATACATCGAAGCGCTGGCCCAACTTTCGCTCACCGGCTG
GCGCCCGAAGCGCACCGTATTCATCTCCTTCGTCCCGGATGAAGAGGTCG
GCGGTGCCGATGGCATGGGCAAGCTTGTCCACAGCACGCTCTTCCAAGCC
ATGAACGTTGGTGTCGCTCTCGACGAGGGCCTCCCGAGAAACGATGCAAA
ATTCAACTGCTACTACGGCGAGCGTCAGACATGGTGGCTCTCGCTCAATG
TCACAGATCGCCCTGGCCATGGGTCCAACCTTCCAAAAACCACTGCCGCC
GCCACGCTCAACCAAATCATCCACAAAGCTATGCAGTTCAGGAAGCGCCA
GTTGCAGCGTCTGGAGTCCGGAGTTGACATGGGTCACATTGTTGGCGTCA
ACATTGCATACCTCAAGTATGGACATCCCGACGAAAACATGTCAGCTGGA
TTCACGATGAACGTCATTTCGTCGCTTGCTCAGGCTGGCTTTGACATTCG
CGTTCCGCCCACCATAGATGCCACCGAGGTAGATAAGGAAATTCAAAGTT
GGATAGCATGTGATGACGATGAACCATGTCCTGGTGTATCCATAGAGTGG
GTCATCAAAGTACAAAATACTAGAGTCACAAGTCGCGATCCTCAACGAAA
TCCGTACGCAGCTTCATTCATGAGGGGTCTCGAGAAGGCGGGGATAGCCC
ACAATCTCAATCACGGCATCTTCCAAGCTGCCACTGACGCCAGATATCTT
AGGGCGAAGGGCGTCCCATGCTTTGGGTTCTCTCCGATAGACACGTCTCC
AAATTTGTTACATAAGCACAATGAATATCTTCCGGTCGACACGTATTTGC
AGGGTATCCGTATTTATCAGAGTATCATTCGTGAAATGGCTGATGACCAC
CAGCAGTCTTCTGATTCCGATACATGTGACCTTCGTCAAGATAAACAGGA
TGTCACCATGCAAATGAACAAGTCAGGCGAAAAGGAAGAGCTATGA
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protein sequence of Gvermi12775.t1

>Gvermi12775.t1 ID=Gvermi12775.t1|Name=Gvermi12775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=482bp
MAPTPRSVATFFALLAAPILYFGRRNLPSPPLPVVPPLVPAIHRLQQYLR
IRTDHPNPAYLDAQFFLNQTVAALLPDATFSTHTFVQGKPIVLITLQGTN
PQLPSLLLNSHTDVVPSEESQWDWPPYAAHTVLKDAQLRIYARGSQDMKS
VGMQYIEALAQLSLTGWRPKRTVFISFVPDEEVGGADGMGKLVHSTLFQA
MNVGVALDEGLPRNDAKFNCYYGERQTWWLSLNVTDRPGHGSNLPKTTAA
ATLNQIIHKAMQFRKRQLQRLESGVDMGHIVGVNIAYLKYGHPDENMSAG
FTMNVISSLAQAGFDIRVPPTIDATEVDKEIQSWIACDDDEPCPGVSIEW
VIKVQNTRVTSRDPQRNPYAASFMRGLEKAGIAHNLNHGIFQAATDARYL
RAKGVPCFGFSPIDTSPNLLHKHNEYLPVDTYLQGIRIYQSIIREMADDH
QQSSDSDTCDLRQDKQDVTMQMNKSGEKEEL*
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mRNA from alignment at ScGOVlb_425:1484303..1485748+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12775.t1 ID=Gvermi12775.t1|Name=Gvermi12775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at ScGOVlb_425:1484303..1485748+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCCACGCCGCGCTCCGTCGCAACCTTTTTCGCCCTTCTGGCCGC
CCCGATCCTCTACTTTGGTCGCCGCAACCTCCCATCACCGCCGCTTCCCG
TCGTGCCTCCCCTCGTCCCTGCAATCCACCGCCTCCAGCAGTATCTCCGC
ATTCGCACCGATCACCCCAACCCGGCCTATCTCGACGCCCAGTTCTTTCT
CAACCAAACCGTCGCCGCCTTGCTGCCGGACGCCACCTTTTCCACCCATA
CCTTTGTGCAGGGAAAGCCCATTGTGCTCATCACACTTCAGGGCACCAAT
CCCCAGCTCCCGTCGCTTCTGCTCAATTCTCACACCGACGTCGTCCCGTC
AGAGGAGTCACAATGGGACTGGCCCCCGTACGCTGCCCACACCGTGCTCA
AAGACGCCCAGCTTCGAATCTATGCGCGCGGGTCGCAGGACATGAAGAGC
GTTGGCATGCAATACATCGAAGCGCTGGCCCAACTTTCGCTCACCGGCTG
GCGCCCGAAGCGCACCGTATTCATCTCCTTCGTCCCGGATGAAGAGGTCG
GCGGTGCCGATGGCATGGGCAAGCTTGTCCACAGCACGCTCTTCCAAGCC
ATGAACGTTGGTGTCGCTCTCGACGAGGGCCTCCCGAGAAACGATGCAAA
ATTCAACTGCTACTACGGCGAGCGTCAGACATGGTGGCTCTCGCTCAATG
TCACAGATCGCCCTGGCCATGGGTCCAACCTTCCAAAAACCACTGCCGCC
GCCACGCTCAACCAAATCATCCACAAAGCTATGCAGTTCAGGAAGCGCCA
GTTGCAGCGTCTGGAGTCCGGAGTTGACATGGGTCACATTGTTGGCGTCA
ACATTGCATACCTCAAGTATGGACATCCCGACGAAAACATGTCAGCTGGA
TTCACGATGAACGTCATTTCGTCGCTTGCTCAGGCTGGCTTTGACATTCG
CGTTCCGCCCACCATAGATGCCACCGAGGTAGATAAGGAAATTCAAAGTT
GGATAGCATGTGATGACGATGAACCATGTCCTGGTGTATCCATAGAGTGG
GTCATCAAAGTACAAAATACTAGAGTCACAAGTCGCGATCCTCAACGAAA
TCCGTACGCAGCTTCATTCATGAGGGGTCTCGAGAAGGCGGGGATAGCCC
ACAATCTCAATCACGGCATCTTCCAAGCTGCCACTGACGCCAGATATCTT
AGGGCGAAGGGCGTCCCATGCTTTGGGTTCTCTCCGATAGACACGTCTCC
AAATTTGTTACATAAGCACAATGAATATCTTCCGGTCGACACGTATTTGC
AGGGTATCCGTATTTATCAGAGTATCATTCGTGAAATGGCTGATGACCAC
CAGCAGTCTTCTGATTCCGATACATGTGACCTTCGTCAAGATAAACAGGA
TGTCACCATGCAAATGAACAAGTCAGGCGAAAAGGAAGAGCTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1484303..1485748+

>Gvermi12775.t1 ID=Gvermi12775.t1|Name=Gvermi12775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1446bp|location=Sequence derived from alignment at ScGOVlb_425:1484303..1485748+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCCACGCCGCGCTCCGTCGCAACCTTTTTCGCCCTTCTGGCCGC
CCCGATCCTCTACTTTGGTCGCCGCAACCTCCCATCACCGCCGCTTCCCG
TCGTGCCTCCCCTCGTCCCTGCAATCCACCGCCTCCAGCAGTATCTCCGC
ATTCGCACCGATCACCCCAACCCGGCCTATCTCGACGCCCAGTTCTTTCT
CAACCAAACCGTCGCCGCCTTGCTGCCGGACGCCACCTTTTCCACCCATA
CCTTTGTGCAGGGAAAGCCCATTGTGCTCATCACACTTCAGGGCACCAAT
CCCCAGCTCCCGTCGCTTCTGCTCAATTCTCACACCGACGTCGTCCCGTC
AGAGGAGTCACAATGGGACTGGCCCCCGTACGCTGCCCACACCGTGCTCA
AAGACGCCCAGCTTCGAATCTATGCGCGCGGGTCGCAGGACATGAAGAGC
GTTGGCATGCAATACATCGAAGCGCTGGCCCAACTTTCGCTCACCGGCTG
GCGCCCGAAGCGCACCGTATTCATCTCCTTCGTCCCGGATGAAGAGGTCG
GCGGTGCCGATGGCATGGGCAAGCTTGTCCACAGCACGCTCTTCCAAGCC
ATGAACGTTGGTGTCGCTCTCGACGAGGGCCTCCCGAGAAACGATGCAAA
ATTCAACTGCTACTACGGCGAGCGTCAGACATGGTGGCTCTCGCTCAATG
TCACAGATCGCCCTGGCCATGGGTCCAACCTTCCAAAAACCACTGCCGCC
GCCACGCTCAACCAAATCATCCACAAAGCTATGCAGTTCAGGAAGCGCCA
GTTGCAGCGTCTGGAGTCCGGAGTTGACATGGGTCACATTGTTGGCGTCA
ACATTGCATACCTCAAGTATGGACATCCCGACGAAAACATGTCAGCTGGA
TTCACGATGAACGTCATTTCGTCGCTTGCTCAGGCTGGCTTTGACATTCG
CGTTCCGCCCACCATAGATGCCACCGAGGTAGATAAGGAAATTCAAAGTT
GGATAGCATGTGATGACGATGAACCATGTCCTGGTGTATCCATAGAGTGG
GTCATCAAAGTACAAAATACTAGAGTCACAAGTCGCGATCCTCAACGAAA
TCCGTACGCAGCTTCATTCATGAGGGGTCTCGAGAAGGCGGGGATAGCCC
ACAATCTCAATCACGGCATCTTCCAAGCTGCCACTGACGCCAGATATCTT
AGGGCGAAGGGCGTCCCATGCTTTGGGTTCTCTCCGATAGACACGTCTCC
AAATTTGTTACATAAGCACAATGAATATCTTCCGGTCGACACGTATTTGC
AGGGTATCCGTATTTATCAGAGTATCATTCGTGAAATGGCTGATGACCAC
CAGCAGTCTTCTGATTCCGATACATGTGACCTTCGTCAAGATAAACAGGA
TGTCACCATGCAAATGAACAAGTCAGGCGAAAAGGAAGAGCTATGA
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