Gvermi12728.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12728.t1
Unique NameGvermi12728.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1228039..1228542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705236.1
Preferred nameFRRS1L
PFAMsCytochrom_B561,DOMON
Max annot lvl2759|Eukaryota
KEGG koko:K03189
GOsGO:0008150,GO:0009966,GO:0010646,GO:0023051,GO:0048583,GO:0050789,GO:0050794,GO:0065007,GO:1900449
Evalue4.77e-06
EggNOG OGsKOG4293@1|root,KOG4293@2759|Eukaryota
DescriptionDOMON domain-containing protein
COG categoryU
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12728Gvermi12728Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1228039..1228542 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12728.t1.stop1Gvermi12728.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1228039..1228041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12728.t1.CDS1Gvermi12728.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1228039..1228542 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12728.t1.exon1Gvermi12728.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1228039..1228542 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12728.t1.start1Gvermi12728.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1228540..1228542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12728.t1Gvermi12728.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1228039..1228542 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12728.t1 ID=Gvermi12728.t1|Name=Gvermi12728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=168bp
MASTSSAGSSADAAMDGNGPTPASTTTSAAAGGHNMGMGHQMSPFLFIRT
TGFFVLFKEANIQSTGAFVGALILSFFFAVLSTLLSQVIRSIEERGLSTS
KPLVKIVTGIQHAFRTFLHYVAMLIVMTMNVWLILAVVAGHALGWIVYAL
ALHPRLKSAANKPACDC*
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spliced messenger RNA

>Gvermi12728.t1 ID=Gvermi12728.t1|Name=Gvermi12728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp|location=Sequence derived from alignment at ScGOVlb_425:1228039..1228542- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCACTTCGTCCGCCGGTTCAAGCGCCGACGCCGCCATGGACGG
TAATGGACCTACCCCTGCCAGTACCACGACATCCGCCGCGGCTGGCGGCC
ATAACATGGGCATGGGGCACCAGATGAGCCCGTTTTTATTCATCCGCACG
ACCGGCTTCTTCGTTCTGTTCAAGGAGGCCAACATCCAGTCCACGGGAGC
GTTCGTTGGTGCCCTAATTTTGTCGTTCTTCTTTGCCGTACTGTCCACCC
TACTGTCGCAGGTGATTCGTTCCATAGAGGAGCGCGGCCTGTCCACGTCC
AAGCCGTTAGTGAAGATTGTCACGGGCATTCAGCACGCGTTTCGAACCTT
TCTTCACTACGTCGCCATGCTTATAGTCATGACCATGAATGTTTGGCTTA
TTCTTGCTGTGGTTGCTGGTCATGCACTGGGATGGATTGTGTACGCGCTC
GCGCTACACCCCAGGCTCAAGTCAGCGGCAAACAAGCCCGCCTGTGATTG
CTAA
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protein sequence of Gvermi12728.t1

>Gvermi12728.t1 ID=Gvermi12728.t1|Name=Gvermi12728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=168bp
MASTSSAGSSADAAMDGNGPTPASTTTSAAAGGHNMGMGHQMSPFLFIRT
TGFFVLFKEANIQSTGAFVGALILSFFFAVLSTLLSQVIRSIEERGLSTS
KPLVKIVTGIQHAFRTFLHYVAMLIVMTMNVWLILAVVAGHALGWIVYAL
ALHPRLKSAANKPACDC*
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mRNA from alignment at ScGOVlb_425:1228039..1228542-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12728.t1 ID=Gvermi12728.t1|Name=Gvermi12728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp|location=Sequence derived from alignment at ScGOVlb_425:1228039..1228542- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCCACTTCGTCCGCCGGTTCAAGCGCCGACGCCGCCATGGACGG
TAATGGACCTACCCCTGCCAGTACCACGACATCCGCCGCGGCTGGCGGCC
ATAACATGGGCATGGGGCACCAGATGAGCCCGTTTTTATTCATCCGCACG
ACCGGCTTCTTCGTTCTGTTCAAGGAGGCCAACATCCAGTCCACGGGAGC
GTTCGTTGGTGCCCTAATTTTGTCGTTCTTCTTTGCCGTACTGTCCACCC
TACTGTCGCAGGTGATTCGTTCCATAGAGGAGCGCGGCCTGTCCACGTCC
AAGCCGTTAGTGAAGATTGTCACGGGCATTCAGCACGCGTTTCGAACCTT
TCTTCACTACGTCGCCATGCTTATAGTCATGACCATGAATGTTTGGCTTA
TTCTTGCTGTGGTTGCTGGTCATGCACTGGGATGGATTGTGTACGCGCTC
GCGCTACACCCCAGGCTCAAGTCAGCGGCAAACAAGCCCGCCTGTGATTG
CTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1228039..1228542-

>Gvermi12728.t1 ID=Gvermi12728.t1|Name=Gvermi12728.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=504bp|location=Sequence derived from alignment at ScGOVlb_425:1228039..1228542- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCCACTTCGTCCGCCGGTTCAAGCGCCGACGCCGCCATGGACGG
TAATGGACCTACCCCTGCCAGTACCACGACATCCGCCGCGGCTGGCGGCC
ATAACATGGGCATGGGGCACCAGATGAGCCCGTTTTTATTCATCCGCACG
ACCGGCTTCTTCGTTCTGTTCAAGGAGGCCAACATCCAGTCCACGGGAGC
GTTCGTTGGTGCCCTAATTTTGTCGTTCTTCTTTGCCGTACTGTCCACCC
TACTGTCGCAGGTGATTCGTTCCATAGAGGAGCGCGGCCTGTCCACGTCC
AAGCCGTTAGTGAAGATTGTCACGGGCATTCAGCACGCGTTTCGAACCTT
TCTTCACTACGTCGCCATGCTTATAGTCATGACCATGAATGTTTGGCTTA
TTCTTGCTGTGGTTGCTGGTCATGCACTGGGATGGATTGTGTACGCGCTC
GCGCTACACCCCAGGCTCAAGTCAGCGGCAAACAAGCCCGCCTGTGATTG
CTAA
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