Gvermi12677.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12677.t1
Unique Name	Gvermi12677.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	655

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:643147..645185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	701347.Entcl_2313
PFAMs	Pyridoxal_deC
Max annot lvl	1236\|Gammaproteobacteria
Evalue	6.18e-196
EggNOG OGs	COG0076@1\|root,COG0076@2\|Bacteria,1Q8I8@1224\|Proteobacteria,1RRHR@1236\|Gammaproteobacteria
Description	decarboxylase
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12677	Gvermi12677	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 643147..645185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12677.t1	Gvermi12677.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 643147..645185 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12677.t1.start1	Gvermi12677.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 643147..643149 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12677.t1.CDS1	Gvermi12677.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 643147..645063 +
Gvermi12677.t1.CDS2	Gvermi12677.t1.CDS2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 645138..645185 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12677.t1.exon1	Gvermi12677.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 643147..645063 +
Gvermi12677.t1.exon2	Gvermi12677.t1.exon2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 645138..645185 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12677.t1.intron1	Gvermi12677.t1.intron1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	intron	ScGOVlb_425 645064..645137 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12677.t1.stop1	Gvermi12677.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 645183..645185 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:643147..645185+
coding sequence from alignment at ScGOVlb_425:643147..645185+

mRNA sequence

>Gvermi12677.t1 ID=Gvermi12677.t1|Name=Gvermi12677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=655bp
MPEGNKTPKGNKMNTKKGKGKLKGMFRSNGKPGRHAPQWLRIRSAMENSF
PTYYETSLDKFATEIGDSVRLLNTLKPARDGPPFIGDDPSVPDYSDVTQA
RMEENSLPLDDVVQECVDMFVGMPHWSHPFTMPNVIPPANKAAIIAATLT
NIFSPNIIEGEYAWNVQKAEMESAAMMADIIGWDTSQAGGVYTYGGSGCY
LYGIKYALTQVLGTDSRCKGVRTDGVILTSQQGHYAKMNATDWTGLGMNN
IIDIETDDDTNEMDIAHLEEVLKDCHERSVPVISVICTMGTTDSFAVDPV
KEIYDLVQRYPNPDGFGKPFIYCDAVIGWSWLFFKGYDFANNPLQFDSEL
LPRLESNYNRIKDVVYADAIGIDFHKTGWSTYNCSMFCMQKLNHFREMMT
RPGSAYLQERTAYNPGLYTLEVSRSGSYALAGWATLRYFGLSGFRSVLGG
ILEMQMYLREKLEDESSMVCVNETDNGFVTLIRVYAPGVDAATQFEREVS
NPEALEELKENNELQQKVADMMWAWFRSGQQYNGLYGAYTSYTSGFRTTD
YNDDMSSDAVVYAIKAFPMNVNITAATMDSLMDMLLMARERVLAGETVPM
PEGGVCPPYDAHNPAITCGDGDAAAEAPRARVHDLVSGVWSAGGFSCYQE
RLDA*

spliced messenger RNA

>Gvermi12677.t1 ID=Gvermi12677.t1|Name=Gvermi12677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at ScGOVlb_425:643147..645185+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAAGGAAACAAAACGCCGAAAGGAAACAAAATGAACACGAAGAA
GGGGAAGGGGAAGCTGAAGGGAATGTTCCGCAGCAACGGAAAGCCCGGAC
GCCACGCTCCGCAATGGCTGCGCATCCGGTCGGCCATGGAGAACAGCTTC
CCAACGTACTACGAGACAAGTCTGGACAAGTTCGCGACAGAGATAGGCGA
TTCGGTGCGTCTGCTCAACACCCTCAAGCCGGCGCGCGACGGGCCGCCTT
TCATTGGCGACGATCCCTCCGTGCCAGACTACTCCGATGTCACCCAGGCG
CGCATGGAGGAGAATTCGCTGCCGCTGGATGACGTGGTGCAAGAGTGCGT
GGACATGTTCGTTGGGATGCCTCACTGGAGCCATCCGTTCACGATGCCGA
ACGTAATCCCGCCCGCGAACAAGGCAGCCATCATCGCGGCGACGCTGACC
AACATCTTCAGCCCGAACATCATTGAGGGTGAGTACGCGTGGAACGTGCA
GAAGGCTGAGATGGAATCAGCAGCCATGATGGCCGACATAATCGGGTGGG
ATACTTCACAAGCCGGCGGCGTCTACACGTACGGGGGTTCAGGCTGCTAT
CTGTACGGCATCAAGTATGCGCTCACCCAGGTGCTGGGCACGGACTCGCG
CTGCAAGGGCGTGCGCACGGACGGGGTCATTTTGACGTCGCAACAGGGTC
ATTACGCCAAGATGAACGCGACAGACTGGACCGGGCTTGGGATGAACAAC
ATCATCGACATCGAAACGGACGACGACACAAACGAAATGGACATCGCACA
CTTGGAGGAGGTGCTCAAAGACTGTCATGAAAGAAGTGTGCCGGTGATTT
CGGTGATCTGCACGATGGGCACGACGGACTCGTTCGCCGTGGACCCCGTG
AAGGAGATCTACGACCTGGTGCAAAGGTACCCCAACCCTGACGGCTTTGG
CAAACCGTTCATCTACTGCGATGCCGTGATCGGATGGTCGTGGTTGTTCT
TCAAGGGGTACGACTTTGCCAACAACCCGCTGCAGTTTGACAGCGAACTT
CTGCCGCGACTTGAAAGCAATTACAACCGGATCAAGGACGTGGTGTACGC
CGACGCGATAGGCATTGACTTTCACAAAACCGGCTGGAGCACGTACAACT
GCAGCATGTTCTGCATGCAGAAGCTGAACCACTTTCGAGAGATGATGACG
CGACCCGGATCGGCGTACCTGCAGGAGCGCACGGCGTACAACCCGGGGCT
GTACACACTGGAGGTGTCGCGCTCAGGGTCGTACGCGCTGGCCGGGTGGG
CGACGCTACGCTACTTTGGGCTGTCGGGCTTCCGCTCGGTGCTGGGCGGC
ATTCTCGAGATGCAGATGTACCTTCGCGAGAAGCTGGAGGACGAGAGCTC
GATGGTGTGCGTGAACGAGACGGATAACGGGTTCGTGACGCTGATCCGGG
TGTACGCACCAGGCGTGGACGCAGCGACGCAGTTCGAACGCGAGGTGAGC
AACCCGGAGGCGCTGGAGGAGCTCAAGGAGAACAACGAGCTGCAGCAGAA
GGTGGCCGACATGATGTGGGCGTGGTTTCGGTCCGGCCAGCAGTACAACG
GGCTGTACGGGGCATACACGAGCTACACGTCGGGCTTCCGAACGACGGAC
TACAACGACGACATGTCGTCCGACGCGGTGGTGTACGCCATCAAGGCGTT
CCCCATGAACGTTAACATCACAGCGGCGACGATGGACAGCCTGATGGACA
TGCTTCTCATGGCGCGCGAGCGCGTGCTCGCCGGCGAGACGGTGCCGATG
CCGGAGGGCGGTGTGTGCCCGCCGTACGACGCGCACAATCCAGCCATCAC
GTgcggcgacggcgacgcggcggctgaggcgCCTCGCGCGCGCGTCCACG
ACCTCGTGTCCGGCGTGTGGAGCGCAGGAGGCTTTAGCTGCTACCAAGAG
CGGTTGGATGCATGA

protein sequence of Gvermi12677.t1

>Gvermi12677.t1 ID=Gvermi12677.t1|Name=Gvermi12677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=655bp
MPEGNKTPKGNKMNTKKGKGKLKGMFRSNGKPGRHAPQWLRIRSAMENSF
PTYYETSLDKFATEIGDSVRLLNTLKPARDGPPFIGDDPSVPDYSDVTQA
RMEENSLPLDDVVQECVDMFVGMPHWSHPFTMPNVIPPANKAAIIAATLT
NIFSPNIIEGEYAWNVQKAEMESAAMMADIIGWDTSQAGGVYTYGGSGCY
LYGIKYALTQVLGTDSRCKGVRTDGVILTSQQGHYAKMNATDWTGLGMNN
IIDIETDDDTNEMDIAHLEEVLKDCHERSVPVISVICTMGTTDSFAVDPV
KEIYDLVQRYPNPDGFGKPFIYCDAVIGWSWLFFKGYDFANNPLQFDSEL
LPRLESNYNRIKDVVYADAIGIDFHKTGWSTYNCSMFCMQKLNHFREMMT
RPGSAYLQERTAYNPGLYTLEVSRSGSYALAGWATLRYFGLSGFRSVLGG
ILEMQMYLREKLEDESSMVCVNETDNGFVTLIRVYAPGVDAATQFEREVS
NPEALEELKENNELQQKVADMMWAWFRSGQQYNGLYGAYTSYTSGFRTTD
YNDDMSSDAVVYAIKAFPMNVNITAATMDSLMDMLLMARERVLAGETVPM
PEGGVCPPYDAHNPAITCGDGDAAAEAPRARVHDLVSGVWSAGGFSCYQE
RLDA*

mRNA from alignment at ScGOVlb_425:643147..645185+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12677.t1 ID=Gvermi12677.t1|Name=Gvermi12677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2039bp|location=Sequence derived from alignment at ScGOVlb_425:643147..645185+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGGAAGGAAACAAAACGCCGAAAGGAAACAAAATGAACACGAAGAA
GGGGAAGGGGAAGCTGAAGGGAATGTTCCGCAGCAACGGAAAGCCCGGAC
GCCACGCTCCGCAATGGCTGCGCATCCGGTCGGCCATGGAGAACAGCTTC
CCAACGTACTACGAGACAAGTCTGGACAAGTTCGCGACAGAGATAGGCGA
TTCGGTGCGTCTGCTCAACACCCTCAAGCCGGCGCGCGACGGGCCGCCTT
TCATTGGCGACGATCCCTCCGTGCCAGACTACTCCGATGTCACCCAGGCG
CGCATGGAGGAGAATTCGCTGCCGCTGGATGACGTGGTGCAAGAGTGCGT
GGACATGTTCGTTGGGATGCCTCACTGGAGCCATCCGTTCACGATGCCGA
ACGTAATCCCGCCCGCGAACAAGGCAGCCATCATCGCGGCGACGCTGACC
AACATCTTCAGCCCGAACATCATTGAGGGTGAGTACGCGTGGAACGTGCA
GAAGGCTGAGATGGAATCAGCAGCCATGATGGCCGACATAATCGGGTGGG
ATACTTCACAAGCCGGCGGCGTCTACACGTACGGGGGTTCAGGCTGCTAT
CTGTACGGCATCAAGTATGCGCTCACCCAGGTGCTGGGCACGGACTCGCG
CTGCAAGGGCGTGCGCACGGACGGGGTCATTTTGACGTCGCAACAGGGTC
ATTACGCCAAGATGAACGCGACAGACTGGACCGGGCTTGGGATGAACAAC
ATCATCGACATCGAAACGGACGACGACACAAACGAAATGGACATCGCACA
CTTGGAGGAGGTGCTCAAAGACTGTCATGAAAGAAGTGTGCCGGTGATTT
CGGTGATCTGCACGATGGGCACGACGGACTCGTTCGCCGTGGACCCCGTG
AAGGAGATCTACGACCTGGTGCAAAGGTACCCCAACCCTGACGGCTTTGG
CAAACCGTTCATCTACTGCGATGCCGTGATCGGATGGTCGTGGTTGTTCT
TCAAGGGGTACGACTTTGCCAACAACCCGCTGCAGTTTGACAGCGAACTT
CTGCCGCGACTTGAAAGCAATTACAACCGGATCAAGGACGTGGTGTACGC
CGACGCGATAGGCATTGACTTTCACAAAACCGGCTGGAGCACGTACAACT
GCAGCATGTTCTGCATGCAGAAGCTGAACCACTTTCGAGAGATGATGACG
CGACCCGGATCGGCGTACCTGCAGGAGCGCACGGCGTACAACCCGGGGCT
GTACACACTGGAGGTGTCGCGCTCAGGGTCGTACGCGCTGGCCGGGTGGG
CGACGCTACGCTACTTTGGGCTGTCGGGCTTCCGCTCGGTGCTGGGCGGC
ATTCTCGAGATGCAGATGTACCTTCGCGAGAAGCTGGAGGACGAGAGCTC
GATGGTGTGCGTGAACGAGACGGATAACGGGTTCGTGACGCTGATCCGGG
TGTACGCACCAGGCGTGGACGCAGCGACGCAGTTCGAACGCGAGGTGAGC
AACCCGGAGGCGCTGGAGGAGCTCAAGGAGAACAACGAGCTGCAGCAGAA
GGTGGCCGACATGATGTGGGCGTGGTTTCGGTCCGGCCAGCAGTACAACG
GGCTGTACGGGGCATACACGAGCTACACGTCGGGCTTCCGAACGACGGAC
TACAACGACGACATGTCGTCCGACGCGGTGGTGTACGCCATCAAGGCGTT
CCCCATGAACGTTAACATCACAGCGGCGACGATGGACAGCCTGATGGACA
TGCTTCTCATGGCGCGCGAGCGCGTGCTCGCCGGCGAGACGGTGCCGATG
CCGGAGGGCGGTGTGTGCCCGCCGTACGACGCGCACAATCCAGCCATCAC
GTgcggcgacggcgacgcggcggctgaggcgCCTCGCGCGCGCGTCCACG
ACCTCGTGTCCGGCGTGGTCGGTTCCCGCGCGCACACGCGCCTGCGCCGC
AGGTAAAACGTAGGACTCGGCTTCCACTGCCTCGCGTGCAGTGGAGCGCA
GGAGGCTTTAGCTGCTACCAAGAGCGGTTGGATGCATGA

Coding sequence (CDS) from alignment at ScGOVlb_425:643147..645185+

>Gvermi12677.t1 ID=Gvermi12677.t1|Name=Gvermi12677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1965bp|location=Sequence derived from alignment at ScGOVlb_425:643147..645185+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGGAAGGAAACAAAACGCCGAAAGGAAACAAAATGAACACGAAGAA
GGGGAAGGGGAAGCTGAAGGGAATGTTCCGCAGCAACGGAAAGCCCGGAC
GCCACGCTCCGCAATGGCTGCGCATCCGGTCGGCCATGGAGAACAGCTTC
CCAACGTACTACGAGACAAGTCTGGACAAGTTCGCGACAGAGATAGGCGA
TTCGGTGCGTCTGCTCAACACCCTCAAGCCGGCGCGCGACGGGCCGCCTT
TCATTGGCGACGATCCCTCCGTGCCAGACTACTCCGATGTCACCCAGGCG
CGCATGGAGGAGAATTCGCTGCCGCTGGATGACGTGGTGCAAGAGTGCGT
GGACATGTTCGTTGGGATGCCTCACTGGAGCCATCCGTTCACGATGCCGA
ACGTAATCCCGCCCGCGAACAAGGCAGCCATCATCGCGGCGACGCTGACC
AACATCTTCAGCCCGAACATCATTGAGGGTGAGTACGCGTGGAACGTGCA
GAAGGCTGAGATGGAATCAGCAGCCATGATGGCCGACATAATCGGGTGGG
ATACTTCACAAGCCGGCGGCGTCTACACGTACGGGGGTTCAGGCTGCTAT
CTGTACGGCATCAAGTATGCGCTCACCCAGGTGCTGGGCACGGACTCGCG
CTGCAAGGGCGTGCGCACGGACGGGGTCATTTTGACGTCGCAACAGGGTC
ATTACGCCAAGATGAACGCGACAGACTGGACCGGGCTTGGGATGAACAAC
ATCATCGACATCGAAACGGACGACGACACAAACGAAATGGACATCGCACA
CTTGGAGGAGGTGCTCAAAGACTGTCATGAAAGAAGTGTGCCGGTGATTT
CGGTGATCTGCACGATGGGCACGACGGACTCGTTCGCCGTGGACCCCGTG
AAGGAGATCTACGACCTGGTGCAAAGGTACCCCAACCCTGACGGCTTTGG
CAAACCGTTCATCTACTGCGATGCCGTGATCGGATGGTCGTGGTTGTTCT
TCAAGGGGTACGACTTTGCCAACAACCCGCTGCAGTTTGACAGCGAACTT
CTGCCGCGACTTGAAAGCAATTACAACCGGATCAAGGACGTGGTGTACGC
CGACGCGATAGGCATTGACTTTCACAAAACCGGCTGGAGCACGTACAACT
GCAGCATGTTCTGCATGCAGAAGCTGAACCACTTTCGAGAGATGATGACG
CGACCCGGATCGGCGTACCTGCAGGAGCGCACGGCGTACAACCCGGGGCT
GTACACACTGGAGGTGTCGCGCTCAGGGTCGTACGCGCTGGCCGGGTGGG
CGACGCTACGCTACTTTGGGCTGTCGGGCTTCCGCTCGGTGCTGGGCGGC
ATTCTCGAGATGCAGATGTACCTTCGCGAGAAGCTGGAGGACGAGAGCTC
GATGGTGTGCGTGAACGAGACGGATAACGGGTTCGTGACGCTGATCCGGG
TGTACGCACCAGGCGTGGACGCAGCGACGCAGTTCGAACGCGAGGTGAGC
AACCCGGAGGCGCTGGAGGAGCTCAAGGAGAACAACGAGCTGCAGCAGAA
GGTGGCCGACATGATGTGGGCGTGGTTTCGGTCCGGCCAGCAGTACAACG
GGCTGTACGGGGCATACACGAGCTACACGTCGGGCTTCCGAACGACGGAC
TACAACGACGACATGTCGTCCGACGCGGTGGTGTACGCCATCAAGGCGTT
CCCCATGAACGTTAACATCACAGCGGCGACGATGGACAGCCTGATGGACA
TGCTTCTCATGGCGCGCGAGCGCGTGCTCGCCGGCGAGACGGTGCCGATG
CCGGAGGGCGGTGTGTGCCCGCCGTACGACGCGCACAATCCAGCCATCAC
GTgcggcgacggcgacgcggcggctgaggcgCCTCGCGCGCGCGTCCACG
ACCTCGTGTCCGGCGTGTGGAGCGCAGGAGGCTTTAGCTGCTACCAAGAG
CGGTTGGATGCATGA