Gvermi12832.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12832.t1
Unique NameGvermi12832.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length100
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1733558..1734082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ33870
PFAMsFA_hydroxylase,TMEM189_B_dmain
Max annot lvl35493|Streptophyta
KEGG koko:K20417
Evalue6.13e-15
EggNOG OGsKOG3011@1|root,KOG3011@2759|Eukaryota,37QIC@33090|Viridiplantae,3G9VM@35493|Streptophyta
EC1.14.19.43
Descriptionfatty acid desaturase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12832Gvermi12832Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1733558..1734082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12832.t1Gvermi12832.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1733558..1734082 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12832.t1.stop1Gvermi12832.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1733558..1733560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12832.t1.CDS1Gvermi12832.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1733558..1733582 -
Gvermi12832.t1.CDS2Gvermi12832.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1733734..1733770 -
Gvermi12832.t1.CDS3Gvermi12832.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1733845..1734082 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12832.t1.exon1Gvermi12832.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1733558..1733582 -
Gvermi12832.t1.exon2Gvermi12832.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1733734..1733770 -
Gvermi12832.t1.exon3Gvermi12832.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1733845..1734082 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12832.t1.intron1Gvermi12832.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1733583..1733733 -
Gvermi12832.t1.intron2Gvermi12832.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1733771..1733844 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12832.t1.start1Gvermi12832.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1734080..1734082 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12832.t1 ID=Gvermi12832.t1|Name=Gvermi12832.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=100bp
LTADGDSVQSTAQQRLLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLIL
ASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYPRRTGRRT*
back to top

spliced messenger RNA

>Gvermi12832.t1 ID=Gvermi12832.t1|Name=Gvermi12832.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=300bp|location=Sequence derived from alignment at ScGOVlb_425:1733558..1734082- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGACCGCCGACGGCGACAGCGTGCAAAGCACCGCTCAGCAGCGCCTTTT
GCTGCTCACGTTCGCGGCCGCCTCGCTGGGCGCACTCGTTGACGTGTTTT
CGGCCGTGCACGGCGCGGTGGATGTCGGTTGCGACCTGTCGCTTATCCTT
GCCTCCTACGTGTTCACCGACTTTGCCGTGGGCGTGTACCATCATGCGGT
GGACAATTACGGATCCAAGCACACGCCGGTGGTAGGATACCAGATCGACG
CGTTTCAGGGCCACCACAAGTACCCGAGACGCACCGGCAGGCGCACATGA
back to top

protein sequence of Gvermi12832.t1

>Gvermi12832.t1 ID=Gvermi12832.t1|Name=Gvermi12832.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=100bp
LTADGDSVQSTAQQRLLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLIL
ASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYPRRTGRRT*
back to top

mRNA from alignment at ScGOVlb_425:1733558..1734082-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12832.t1 ID=Gvermi12832.t1|Name=Gvermi12832.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=525bp|location=Sequence derived from alignment at ScGOVlb_425:1733558..1734082- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGACCGCCGACGGCGACAGCGTGCAAAGCACCGCTCAGCAGCGCCTTTT
GCTGCTCACGTTCGCGGCCGCCTCGCTGGGCGCACTCGTTGACGTGTTTT
CGGCCGTGCACGGCGCGGTGGATGTCGGTTGCGACCTGTCGCTTATCCTT
GCCTCCTACGTGTTCACCGACTTTGCCGTGGGCGTGTACCATCATGCGGT
GGACAATTACGGATCCAAGCACACGCCGGTGGTAGGATGTAAGTAGCAGC
TGCGCGTGCGCGCGCGTGCGACGCAGGCGCGGTGCAGCTTGCTGACTGAG
GTTTTGTTGCAGACCAGATCGACGCGTTTCAGGGCCACCACAAGTACCCG
TGGACCATCACGTGGCGCGACACGGCCAACAACTTGCACAGGCTGGCGCT
TGTGGCGACGCCGCAACTGCTGCTGGCGCTGGCGGCGCCGCTGCCGCCGC
CCGTGGAGGCGTTCTACGCGTCGTTTGTGCTGTTCGTTGTGGTGTCGCAG
GAGACGCACCGGCAGGCGCACATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1733558..1734082-

>Gvermi12832.t1 ID=Gvermi12832.t1|Name=Gvermi12832.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=300bp|location=Sequence derived from alignment at ScGOVlb_425:1733558..1734082- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGACCGCCGACGGCGACAGCGTGCAAAGCACCGCTCAGCAGCGCCTTTT
GCTGCTCACGTTCGCGGCCGCCTCGCTGGGCGCACTCGTTGACGTGTTTT
CGGCCGTGCACGGCGCGGTGGATGTCGGTTGCGACCTGTCGCTTATCCTT
GCCTCCTACGTGTTCACCGACTTTGCCGTGGGCGTGTACCATCATGCGGT
GGACAATTACGGATCCAAGCACACGCCGGTGGTAGGATACCAGATCGACG
CGTTTCAGGGCCACCACAAGTACCCGAGACGCACCGGCAGGCGCACATGA
back to top