Gvermi12786.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12786.t1
Unique NameGvermi12786.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1514073..1514843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ24170
PFAMsMethyltransf_4
Max annot lvl35493|Streptophyta
KEGG koko:K03439
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234
Evalue4.28e-71
EggNOG OGsCOG0220@1|root,KOG3115@2759|Eukaryota,37N64@33090|Viridiplantae,3G7XK@35493|Streptophyta
EC2.1.1.33
DescriptionCatalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12786Gvermi12786Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1514073..1514843 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12786.t1.start1Gvermi12786.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1514073..1514075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12786.t1.CDS1Gvermi12786.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1514073..1514843 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12786.t1.exon1Gvermi12786.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1514073..1514843 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12786.t1.stop1Gvermi12786.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1514841..1514843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12786.t1Gvermi12786.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1514073..1514843 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12786.t1 ID=Gvermi12786.t1|Name=Gvermi12786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=257bp
MASAMQGSEQPKASTADGVADQGRVQWMVSKRDFRARAHSNPLNDGLFEP
PLTPCQLPMSKLFENAPCCKVQWCDIGCGYGGLLASLSTAFPDKVMLGLE
IRDRVADYCRQRVMEMRKQYPGSYGNIAFERTNAMKFLANYFSKGSLQKL
FFCYPDPHFKRKKNRQRIISTQLLAEYAYVLEEGTGVAYVVTDVAELFEW
MVARFEAHPLFERRSADEHAADAVCGYVRDMTDEAQRVEKSDRKKQDASF
RRLPNP*
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spliced messenger RNA

>Gvermi12786.t1 ID=Gvermi12786.t1|Name=Gvermi12786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_425:1514073..1514843+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCGCCATGCAAGGTTCAGAGCAGCCGAAGGCGAGCACCGCAGA
TGGGGTAGCGGACCAGGGGCGCGTGCAATGGATGGTGAGCAAGCGGGACT
TTCGAGCGCGCGCTCACTCCAATCCCTTGAACGATGGGCTGTTCGAGCCG
CCGCTCACGCCATGCCAGTTGCCCATGAGCAAGCTGTTCGAGAATGCGCC
GTGTTGTAAAGTACAGTGGTGCGACATAGGGTGCGGCTATGGGGGCTTGC
TTGCAAGTCTCAGCACTGCGTTCCCCGACAAAGTAATGCTGGGGTTGGAA
ATTCGTGACCGAGTGGCTGACTACTGTCGGCAGAGAGTGATGGAAATGCG
CAAACAATACCCTGGCAGCTATGGGAACATTGCTTTTGAAAGAACAAACG
CTATGAAGTTTCTTGCAAATTATTTTTCAAAGGGAAGTTTACAAAAGCTC
TTCTTTTGTTACCCCGACCCTCATTTCAAGCGGAAAAAGAATCGGCAGCG
CATTATCTCCACGCAGTTATTGGCGGAATACGCATACGTTCTCGAAGAAG
GAACGGGCGTAGCGTATGTCGTAACCGACGTTGCAGAGCTGTTTGAATGG
ATGGTAGCCCGCTTTGAAGCGCACCCGTTGTTCGAAAGGCGTTCCGCCGA
TGAGCATGCAGCGGATGCCGTATGCGGGTACGTTCGTGATATGACTGATG
AGGCGCAGCGAGTTGAAAAAAGCGATAGAAAGAAGCAGGATGCGTCTTTT
CGTCGCTTACCAAATCCGTAG
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protein sequence of Gvermi12786.t1

>Gvermi12786.t1 ID=Gvermi12786.t1|Name=Gvermi12786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=257bp
MASAMQGSEQPKASTADGVADQGRVQWMVSKRDFRARAHSNPLNDGLFEP
PLTPCQLPMSKLFENAPCCKVQWCDIGCGYGGLLASLSTAFPDKVMLGLE
IRDRVADYCRQRVMEMRKQYPGSYGNIAFERTNAMKFLANYFSKGSLQKL
FFCYPDPHFKRKKNRQRIISTQLLAEYAYVLEEGTGVAYVVTDVAELFEW
MVARFEAHPLFERRSADEHAADAVCGYVRDMTDEAQRVEKSDRKKQDASF
RRLPNP*
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mRNA from alignment at ScGOVlb_425:1514073..1514843+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12786.t1 ID=Gvermi12786.t1|Name=Gvermi12786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_425:1514073..1514843+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCCGCCATGCAAGGTTCAGAGCAGCCGAAGGCGAGCACCGCAGA
TGGGGTAGCGGACCAGGGGCGCGTGCAATGGATGGTGAGCAAGCGGGACT
TTCGAGCGCGCGCTCACTCCAATCCCTTGAACGATGGGCTGTTCGAGCCG
CCGCTCACGCCATGCCAGTTGCCCATGAGCAAGCTGTTCGAGAATGCGCC
GTGTTGTAAAGTACAGTGGTGCGACATAGGGTGCGGCTATGGGGGCTTGC
TTGCAAGTCTCAGCACTGCGTTCCCCGACAAAGTAATGCTGGGGTTGGAA
ATTCGTGACCGAGTGGCTGACTACTGTCGGCAGAGAGTGATGGAAATGCG
CAAACAATACCCTGGCAGCTATGGGAACATTGCTTTTGAAAGAACAAACG
CTATGAAGTTTCTTGCAAATTATTTTTCAAAGGGAAGTTTACAAAAGCTC
TTCTTTTGTTACCCCGACCCTCATTTCAAGCGGAAAAAGAATCGGCAGCG
CATTATCTCCACGCAGTTATTGGCGGAATACGCATACGTTCTCGAAGAAG
GAACGGGCGTAGCGTATGTCGTAACCGACGTTGCAGAGCTGTTTGAATGG
ATGGTAGCCCGCTTTGAAGCGCACCCGTTGTTCGAAAGGCGTTCCGCCGA
TGAGCATGCAGCGGATGCCGTATGCGGGTACGTTCGTGATATGACTGATG
AGGCGCAGCGAGTTGAAAAAAGCGATAGAAAGAAGCAGGATGCGTCTTTT
CGTCGCTTACCAAATCCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1514073..1514843+

>Gvermi12786.t1 ID=Gvermi12786.t1|Name=Gvermi12786.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=771bp|location=Sequence derived from alignment at ScGOVlb_425:1514073..1514843+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCCGCCATGCAAGGTTCAGAGCAGCCGAAGGCGAGCACCGCAGA
TGGGGTAGCGGACCAGGGGCGCGTGCAATGGATGGTGAGCAAGCGGGACT
TTCGAGCGCGCGCTCACTCCAATCCCTTGAACGATGGGCTGTTCGAGCCG
CCGCTCACGCCATGCCAGTTGCCCATGAGCAAGCTGTTCGAGAATGCGCC
GTGTTGTAAAGTACAGTGGTGCGACATAGGGTGCGGCTATGGGGGCTTGC
TTGCAAGTCTCAGCACTGCGTTCCCCGACAAAGTAATGCTGGGGTTGGAA
ATTCGTGACCGAGTGGCTGACTACTGTCGGCAGAGAGTGATGGAAATGCG
CAAACAATACCCTGGCAGCTATGGGAACATTGCTTTTGAAAGAACAAACG
CTATGAAGTTTCTTGCAAATTATTTTTCAAAGGGAAGTTTACAAAAGCTC
TTCTTTTGTTACCCCGACCCTCATTTCAAGCGGAAAAAGAATCGGCAGCG
CATTATCTCCACGCAGTTATTGGCGGAATACGCATACGTTCTCGAAGAAG
GAACGGGCGTAGCGTATGTCGTAACCGACGTTGCAGAGCTGTTTGAATGG
ATGGTAGCCCGCTTTGAAGCGCACCCGTTGTTCGAAAGGCGTTCCGCCGA
TGAGCATGCAGCGGATGCCGTATGCGGGTACGTTCGTGATATGACTGATG
AGGCGCAGCGAGTTGAAAAAAGCGATAGAAAGAAGCAGGATGCGTCTTTT
CGTCGCTTACCAAATCCGTAG
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